MS014198.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS014198.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	selT-like protein
Location	scaffold5: 1349739 .. 1350080 (-)
Sequence length	342
RNA-Seq Expression	MS014198.1
Synteny	MS014198.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCATGTTTTGGCAGAGGAACTTCCATGTCGATTAAGCTGCTGGTGCTTGAAAACTTTCCTGGAATCAATGTTACTCTTTCACATCATCCTCCAGATTTGACAAAATATCTTACGACAAAATTTATATCAACTGCACAAGTACTGATTATTATCATAGTGATGGCTGGTGGATATATTCTTGCCGAGATGAGAATGCCAATACCTCCTTGGTACCATCGTTTGGCCGCACACAAATTTTTTGTCATCGCAATCCCTTGGCTTCTGGGCAGCATAGCTATAAACTACCTCCAAAACACTGAGCCCTTTGAAGTTTACTTCAATGATGAACTGGTACTGAAC

mRNA sequence

ATATCATGTTTTGGCAGAGGAACTTCCATGTCGATTAAGCTGCTGGTGCTTGAAAACTTTCCTGGAATCAATGTTACTCTTTCACATCATCCTCCAGATTTGACAAAATATCTTACGACAAAATTTATATCAACTGCACAAGTACTGATTATTATCATAGTGATGGCTGGTGGATATATTCTTGCCGAGATGAGAATGCCAATACCTCCTTGGTACCATCGTTTGGCCGCACACAAATTTTTTGTCATCGCAATCCCTTGGCTTCTGGGCAGCATAGCTATAAACTACCTCCAAAACACTGAGCCCTTTGAAGTTTACTTCAATGATGAACTGGTACTGAAC

Coding sequence (CDS)

ATATCATGTTTTGGCAGAGGAACTTCCATGTCGATTAAGCTGCTGGTGCTTGAAAACTTTCCTGGAATCAATGTTACTCTTTCACATCATCCTCCAGATTTGACAAAATATCTTACGACAAAATTTATATCAACTGCACAAGTACTGATTATTATCATAGTGATGGCTGGTGGATATATTCTTGCCGAGATGAGAATGCCAATACCTCCTTGGTACCATCGTTTGGCCGCACACAAATTTTTTGTCATCGCAATCCCTTGGCTTCTGGGCAGCATAGCTATAAACTACCTCCAAAACACTGAGCCCTTTGAAGTTTACTTCAATGATGAACTGGTACTGAAC

Protein sequence

ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILAEMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN

Homology

[Close]

BLAST of MS014198.1 vs. NCBI nr
Match: XP_022148433.1 (selT-like protein [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 6.5e-54
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 3   CFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILA 62
           C  RGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILA
Sbjct: 97  CSYRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILA 156

Query: 63  EMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELV 113
           EMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELV
Sbjct: 157 EMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELV 206

[Close]

BLAST of MS014198.1 vs. NCBI nr
Match: PKA63308.1 (SelT-like protein [Apostasia shenzhenica])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 52/114 (45.61%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYI 60
           +SC  RG+++++K ++  +FPGI VTLS++PP L K L +K +  AQV  I+I+ AG +I
Sbjct: 75  VSCSYRGSAVNMKNMLEASFPGIEVTLSNYPPALPKRLLSKIVPVAQVSFIVIITAGEHI 134

Query: 61  LAEMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
             ++ M  PPWY+ L A++F  IA  WLLG+   + LQ++  FEVYFN ELV +
Sbjct: 135 FPKLGMVPPPWYYTLRANRFGAIASTWLLGNFVQSSLQSSGAFEVYFNGELVFS 188

[Close]

BLAST of MS014198.1 vs. NCBI nr
Match: XP_020252680.1 (LOW QUALITY PROTEIN: selT-like protein [Asparagus officinalis])

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-18
Identity = 50/113 (44.25%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 2   SCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYIL 61
           SC  +GT++++K ++  +FPGI+V LS++PP L K L  K +  AQ  +I I+M G +I 
Sbjct: 77  SCSYKGTAVTMKKMLEASFPGIDVILSNYPPSLPKRLLNKIVPVAQFGVIGIIMGGEHIF 136

Query: 62  AEMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
             + MP P WYH L A++F  +A  WLLG+ A ++LQ++  FEVY N ELV +
Sbjct: 137 PRLGMPPPQWYHSLRANRFGSMATTWLLGNFAQSFLQSSGAFEVYCNRELVFS 189

[Close]

BLAST of MS014198.1 vs. NCBI nr
Match: XP_020593214.1 (selT-like protein [Phalaenopsis equestris])

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-18
Identity = 50/114 (43.86%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 1   ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYI 60
           +SC  RGT++++K ++  +FPGI V LS++PP L K + +K +  AQV +I I++AG +I
Sbjct: 77  VSCSYRGTAVNMKNMLEASFPGIEVILSNYPPPLPKRIASKVVPVAQVGLIAIIVAGEHI 136

Query: 61  LAEMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
              + M  PPWY+ L A++F  IA  WLLG+   + LQ++  FEVY N ELV +
Sbjct: 137 FPRLGMAPPPWYYSLRANRFGAIASTWLLGNFLQSSLQSSGAFEVYCNGELVFS 190

[Close]

BLAST of MS014198.1 vs. NCBI nr
Match: KAG9453466.1 (hypothetical protein H6P81_006370 [Aristolochia fimbriata])

HSP 1 Score: 101.7 bits (252), Expect = 4.4e-18
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 2   SCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYIL 61
           SC  RGT++++K ++  +FPGI+V LS+HPP L K L  K I   QV ++ I+MAG  I 
Sbjct: 76  SCSYRGTAVTMKKMLETSFPGIDVILSNHPPTLPKRLLGKVIPVVQVGVMAIIMAGEQIF 135

Query: 62  AEMRMPIPP-WYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
             +    PP WY+ L A++F  IA  WL G++  N+LQ++  FEVY NDELV +
Sbjct: 136 PRLGFMTPPAWYYSLRANRFGAIASTWLFGNVVQNFLQSSGAFEVYCNDELVFS 189

[Close]

BLAST of MS014198.1 vs. ExPASy Swiss-Prot
Match: Q9STZ2 (SelT-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-15
Identity = 44/115 (38.26%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1   ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYI 60
           ISC  +GT++S+K ++   FPG++V L+++P    K +  K +  AQV +I ++M G  I
Sbjct: 65  ISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQI 124

Query: 61  LAEMRMPIPP-WYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
              + +  PP WYH L A++F  +A  WLLG+   ++LQ++  FEV  N ELV +
Sbjct: 125 FPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFS 179

[Close]

BLAST of MS014198.1 vs. ExPASy TrEMBL
Match: A0A6J1D431 (selT-like protein OS=Momordica charantia OX=3673 GN=LOC111017081 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 3   CFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILA 62
           C  RGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILA
Sbjct: 97  CSYRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILA 156

Query: 63  EMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELV 113
           EMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELV
Sbjct: 157 EMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELV 206

[Close]

BLAST of MS014198.1 vs. ExPASy TrEMBL
Match: A0A2I0B679 (SelT-like protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017777 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.0e-20
Identity = 52/114 (45.61%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYI 60
           +SC  RG+++++K ++  +FPGI VTLS++PP L K L +K +  AQV  I+I+ AG +I
Sbjct: 75  VSCSYRGSAVNMKNMLEASFPGIEVTLSNYPPALPKRLLSKIVPVAQVSFIVIITAGEHI 134

Query: 61  LAEMRMPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
             ++ M  PPWY+ L A++F  IA  WLLG+   + LQ++  FEVYFN ELV +
Sbjct: 135 FPKLGMVPPPWYYTLRANRFGAIASTWLLGNFVQSSLQSSGAFEVYFNGELVFS 188

[Close]

BLAST of MS014198.1 vs. ExPASy TrEMBL
Match: A0A5B7BDY4 (Putative selT-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035879 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.2e-18
Identity = 51/114 (44.74%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 2   SCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYIL 61
           SC  RGT++++K ++  +FPG++V L+++PP L K L +K +   Q+ II IVMAG  I 
Sbjct: 84  SCSYRGTAVTMKKMLETSFPGLDVILANYPPPLPKRLLSKLVPIVQMGIIGIVMAGEQIF 143

Query: 62  AEMR-MPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
             +  +  PPWY+ L A++F  IA  WLLG++  ++LQN+  FEVY+NDELV +
Sbjct: 144 PALGFVAPPPWYYSLRANRFGSIATTWLLGNVLQSFLQNSGAFEVYYNDELVFS 197

[Close]

BLAST of MS014198.1 vs. ExPASy TrEMBL
Match: A0A314XXS3 (SelT-like protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_02303 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.2e-18
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 4   FGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYILAE 63
           FGRG +++I  ++  +FPGI+V L +HPP L K + +K +  AQV +  IVMAG  I   
Sbjct: 16  FGRGNAVTITKMLESSFPGIHVVLLNHPPPLPKRVLSKLVPVAQVGVFGIVMAGEQIFPM 75

Query: 64  MR-MPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
           +  M  PPWYH L A++F  IA  WLLG+   ++LQ T  FEV+ NDELV +
Sbjct: 76  LGIMTPPPWYHSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELVFS 127

[Close]

BLAST of MS014198.1 vs. ExPASy TrEMBL
Match: M5WCM6 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G055700 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 2   SCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYIL 61
           SC  +G +++I  ++  +FPGI+V LS+HPP L K + +K +  AQV +  IVMAG +I 
Sbjct: 78  SCSYKGNALTITKMLESSFPGIHVVLSNHPPPLPKRVLSKLVPVAQVGVFGIVMAGEHIF 137

Query: 62  AEMR-MPIPPWYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
             +  M  PPWY+ L A++F  IA  WLLG+   ++LQ T  FEV+ NDELV +
Sbjct: 138 PMLGIMTPPPWYYSLRANRFGTIASTWLLGNALQSFLQGTGAFEVFLNDELVFS 191

[Close]

BLAST of MS014198.1 vs. TAIR 10
Match: AT3G47300.1 (SELT-like protein precursor )

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 44/115 (38.26%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1   ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYI 60
           ISC  +GT++S+K ++   FPG++V L+++P    K +  K +  AQV +I ++M G  I
Sbjct: 65  ISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQI 124

Query: 61  LAEMRMPIPP-WYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
              + +  PP WYH L A++F  +A  WLLG+   ++LQ++  FEV  N ELV +
Sbjct: 125 FPMIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFS 179

[Close]

BLAST of MS014198.1 vs. TAIR 10
Match: AT5G58640.1 (Selenoprotein, Rdx type )

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-16
Identity = 41/115 (35.65%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 1   ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYI 60
           +SC  +GT++++K ++   FPG++V L+++PP   K L  K +   Q+ +I +++AG  I
Sbjct: 82  VSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKRLLAKVVPVVQMGVIGMIVAGDRI 141

Query: 61  LAEMRMPIPP-WYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
           L  + +  PP W+H L A++F  +A  WL+G+   +YLQ++  FEV+ N E V +
Sbjct: 142 LPMIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAFEVHCNGEPVFS 196

[Close]

BLAST of MS014198.1 vs. TAIR 10
Match: AT5G58640.2 (Selenoprotein, Rdx type )

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-16
Identity = 41/115 (35.65%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 1   ISCFGRGTSMSIKLLVLENFPGINVTLSHHPPDLTKYLTTKFISTAQVLIIIIVMAGGYI 60
           +SC  +GT++++K ++   FPG++V L+++PP   K L  K +   Q+ +I +++AG  I
Sbjct: 81  VSCSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKRLLAKVVPVVQMGVIGMIVAGDRI 140

Query: 61  LAEMRMPIPP-WYHRLAAHKFFVIAIPWLLGSIAINYLQNTEPFEVYFNDELVLN 115
           L  + +  PP W+H L A++F  +A  WL+G+   +YLQ++  FEV+ N E V +
Sbjct: 141 LPMIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAFEVHCNGEPVFS 195

The following BLAST results are available for this feature:

BLAST of MS014198.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148433.1	6.5e-54	98.18	selT-like protein [Momordica charantia]	[more]
PKA63308.1	1.0e-19	45.61	SelT-like protein [Apostasia shenzhenica]	[more]
XP_020252680.1	2.6e-18	44.25	LOW QUALITY PROTEIN: selT-like protein [Asparagus officinalis]	[more]
XP_020593214.1	4.4e-18	43.86	selT-like protein [Phalaenopsis equestris]	[more]
KAG9453466.1	4.4e-18	45.61	hypothetical protein H6P81_006370 [Aristolochia fimbriata]	[more]

BLAST of MS014198.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STZ2	2.1e-15	38.26	SelT-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g47300 PE=2 SV=2	[more]

BLAST of MS014198.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D431	3.1e-54	98.18	selT-like protein OS=Momordica charantia OX=3673 GN=LOC111017081 PE=4 SV=1	[more]
A0A2I0B679	5.0e-20	45.61	SelT-like protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017777 PE=4 SV...	[more]
A0A5B7BDY4	6.2e-18	44.74	Putative selT-like protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_035...	[more]
A0A314XXS3	6.2e-18	46.43	SelT-like protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_02303 PE=...	[more]
M5WCM6	1.4e-17	44.74	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G055700 PE=4 SV=1	[more]

BLAST of MS014198.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47300.1	1.5e-16	38.26	SELT-like protein precursor	[more]
AT5G58640.1	4.4e-16	35.65	Selenoprotein, Rdx type	[more]
AT5G58640.2	4.4e-16	35.65	Selenoprotein, Rdx type	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019389	Selenoprotein T	PANTHER	PTHR13544	SELENOPROTEIN T	coord: 2..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS014198	MS014198	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS014198.1-cds	MS014198.1-cds-scaffold5:1349739..1350080	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS014198.1	MS014198.1-protein	polypeptide