MS013456.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013456.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Location	scaffold402: 1679844 .. 1680128 (-)
Sequence length	285
RNA-Seq Expression	MS013456.1
Synteny	MS013456.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC

mRNA sequence

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC

Coding sequence (CDS)

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC

Protein sequence

MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASPMSPMAATPPSPATSAAVNSKYYLNQVPLRSNFPIF

Homology

[Close]

BLAST of MS013456.1 vs. NCBI nr
Match: KAG7019500.1 (hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-27
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED+REAL SSSSSLKIDKFS +S 
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREAL-SSSSSLKIDKFSVSSL 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQ 86
           S MAA+PPSPATSAAV+SKY+LNQ
Sbjct: 61 PSTMAASPPSPATSAAVSSKYFLNQ 84

[Close]

BLAST of MS013456.1 vs. NCBI nr
Match: KAA0054015.1 (hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK20701.1 hypothetical protein E5676_scaffold480G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-22
Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED RE+LA SSSS KIDKFS +SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLA-SSSSFKIDKFSVSSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           S     P S A +AAVNSKY+L+QVP+
Sbjct: 61 PS-----PASSAAAAAVNSKYFLDQVPV 82

[Close]

BLAST of MS013456.1 vs. NCBI nr
Match: KAG6583880.1 (hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED+REAL SSSSSLKIDKFS +S 
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREAL-SSSSSLKIDKFSVSSL 60

Query: 61 MSPMAATPPSPATSAA 77
           S MAA+PPSPATSAA
Sbjct: 61 PSTMAASPPSPATSAA 75

[Close]

BLAST of MS013456.1 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_023250 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+P+VLDTINEED REAL  SSSS KIDKFS  SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALV-SSSSFKIDKFSVPSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           SP        +++AA+NSKY+L+QVP+
Sbjct: 61 PSP-------DSSAAAINSKYFLDQVPV 80

[Close]

BLAST of MS013456.1 vs. NCBI nr
Match: KAF7842889.1 (uncharacterized protein G2W53_005187 [Senna tora])

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALAS--SSSSLKIDKFSAASP 62
          A SR+ARFI E  PPQ V+VMR RT K+LDTI EED RE  +S  SSSS K    S++SP
Sbjct: 2  ANSRIARFIMEVAPPQYVTVMRHRTSKMLDTITEEDQREISSSNNSSSSPKGSSSSSSSP 61

Query: 63 MSPMAATPPSPATSAAV---NSKYYLNQV 87
          +SP++++P + A+SA++   NSKY+L +V
Sbjct: 62 LSPLSSSPSASASSASIPNGNSKYFLKEV 90

[Close]

BLAST of MS013456.1 vs. ExPASy TrEMBL
Match: A0A5A7UJX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00970 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED RE+LA SSSS KIDKFS +SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLA-SSSSFKIDKFSVSSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           S     P S A +AAVNSKY+L+QVP+
Sbjct: 61 PS-----PASSAAAAAVNSKYFLDQVPV 82

[Close]

BLAST of MS013456.1 vs. ExPASy TrEMBL
Match: A0A0A0LYE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.0e-21
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+P+VLDTINEED REAL  SSSS KIDKFS  SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALV-SSSSFKIDKFSVPSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           SP        +++AA+NSKY+L+QVP+
Sbjct: 61 PSP-------DSSAAAINSKYFLDQVPV 80

[Close]

BLAST of MS013456.1 vs. ExPASy TrEMBL
Match: A0A314XQS6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10926 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALAS-----SSSSLKIDKF 60
          M A SRLARFI+E  PPQ VSVMR RT KVLDTINEE+   A  S     SSSS K    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SAASPMSPMAATPPSPATSAAVNSKYYLNQV 87
          S +SP  P  A+  S A +A   SKY+L +V
Sbjct: 61 STSSP--PSFASAASGAAAAGTESKYFLKEV 89

[Close]

BLAST of MS013456.1 vs. ExPASy TrEMBL
Match: A0A2P6Q5Q7 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 3   ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASPMS 62
           A +RLARFI+EA PPQ+VSVMRRRT KVLDTI EED RE  + + S     K S+A P S
Sbjct: 53  ANARLARFITEAAPPQIVSVMRRRTSKVLDTITEED-REYASPNDSLNSSPKGSSALPSS 112

Query: 63  PMAATPPSPATSAAVNSKYYLNQV 87
             +A     A +A  ++KY+L  V
Sbjct: 113 SPSAPSFGSAAAAGTDAKYFLKGV 135

[Close]

BLAST of MS013456.1 vs. ExPASy TrEMBL
Match: A0A218VVC5 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006114 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP-- 62
          A SRLARF+ EA PPQ VSVMR RT K+LDTI+EE+ R    SS  S  +++ S+ S   
Sbjct: 2  ANSRLARFVMEAAPPQFVSVMRHRTTKMLDTISEEETRGEFTSSDHSKSLNRSSSFSQKN 61

Query: 63 MSPMAATPPSPATSAA------VNSKYYLNQVP 88
           S ++++ PS + SA+      V S+Y+ N+VP
Sbjct: 62 TSTLSSSAPSHSPSASRIAMTTVGSRYFYNEVP 94

[Close]

BLAST of MS013456.1 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASPM- 62
          ATSRLARFI+E  PPQ V+VMRRRT KVLDTI EE+ RE    S      +    +SP  
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEE-REVGTDSIFPSSFNSKKISSPFT 61

Query: 63 SPMAATPPSPATSAAVNSKYYLNQVPL---RSNFPIF 96
          SP +++  S + SA+  S   LN+ P+   R +FP+F
Sbjct: 62 SPYSSSVSSASASASCTSG--LNKFPVTENRGSFPVF 95

[Close]

BLAST of MS013456.1 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 3  ATSRLARFISEACPPQVVSVMRRR--TPKVLDTINEEDYRE 42
          ATSRLARF+SE  PPQ V+VMRR     + LDTI EE+ +E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

The following BLAST results are available for this feature:

BLAST of MS013456.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019500.1	9.6e-27	85.88	hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0054015.1	3.2e-22	76.14	hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK2070...	[more]
KAG6583880.1	4.2e-22	86.84	hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65872.1	1.0e-20	71.59	hypothetical protein Csa_023250 [Cucumis sativus]	[more]
KAF7842889.1	1.1e-11	53.93	uncharacterized protein G2W53_005187 [Senna tora]	[more]

BLAST of MS013456.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013456.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJX7	1.5e-22	76.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LYE6	5.0e-21	71.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1	[more]
A0A314XQS6	5.7e-09	53.85	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_109...	[more]
A0A2P6Q5Q7	2.2e-08	52.38	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4...	[more]
A0A218VVC5	4.8e-08	46.24	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006114 PE=4 SV=1	[more]

BLAST of MS013456.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30260.1	2.3e-10	47.42	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein...	[more]
AT4G21060.1	1.3e-05	60.98	Galactosyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35101:SF12	OS02G0162600 PROTEIN	coord: 2..95
None	No IPR available	PANTHER	PTHR35101	OS02G0162600 PROTEIN	coord: 2..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013456	MS013456	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013456.1-cds	MS013456.1-cds-scaffold402:1679844..1680128	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013456.1	MS013456.1-protein	polypeptide