MS013456 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASPMSPMAATPPSPATSAAVNSKYYLNQVPLRSNFPIF Homology
BLAST of MS013456 vs. NCBI nr
Match: KAG7019500.1 (hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 130.2 bits (326), Expect = 9.6e-27 Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0
BLAST of MS013456 vs. NCBI nr
Match: KAA0054015.1 (hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK20701.1 hypothetical protein E5676_scaffold480G00970 [Cucumis melo var. makuwa]) HSP 1 Score: 115.2 bits (287), Expect = 3.2e-22 Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0
BLAST of MS013456 vs. NCBI nr
Match: KAG6583880.1 (hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22 Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 0
BLAST of MS013456 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_023250 [Cucumis sativus]) HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20 Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0
BLAST of MS013456 vs. NCBI nr
Match: KAF7842889.1 (uncharacterized protein G2W53_005187 [Senna tora]) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11 Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 0
BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A5A7UJX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00970 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22 Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0
BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A0A0LYE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 5.0e-21 Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0
BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A314XQS6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10926 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09 Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 0
BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A2P6Q5Q7 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08 Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 0
BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A218VVC5 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006114 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08 Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0
BLAST of MS013456 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10 Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 0
BLAST of MS013456 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein ) HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05 Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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