MS013456 (gene) Bitter gourd (TR) v1

Overview
NameMS013456
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Locationscaffold402: 1679844 .. 1680128 (-)
RNA-Seq ExpressionMS013456
SyntenyMS013456
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC

mRNA sequence

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC

Coding sequence (CDS)

ATGGCAGCCACTTCTCGATTGGCCAGGTTTATAAGCGAGGCTTGCCCTCCTCAAGTCGTCTCCGTCATGAGGCGCAGAACCCCCAAAGTTCTGGACACCATTAACGAAGAAGACTACAGAGAAGCCCTAGCCTCCTCCTCCTCCTCCTTGAAGATCGACAAATTCTCCGCTGCTTCACCGATGTCTCCCATGGCCGCGACGCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTATCTCAATCAGGTCCCCTTGAGGTCTAATTTCCCCATTTTC

Protein sequence

MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASPMSPMAATPPSPATSAAVNSKYYLNQVPLRSNFPIF
Homology
BLAST of MS013456 vs. NCBI nr
Match: KAG7019500.1 (hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-27
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED+REAL SSSSSLKIDKFS +S 
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREAL-SSSSSLKIDKFSVSSL 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQ 86
           S MAA+PPSPATSAAV+SKY+LNQ
Sbjct: 61 PSTMAASPPSPATSAAVSSKYFLNQ 84

BLAST of MS013456 vs. NCBI nr
Match: KAA0054015.1 (hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK20701.1 hypothetical protein E5676_scaffold480G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-22
Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED RE+LA SSSS KIDKFS +SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLA-SSSSFKIDKFSVSSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           S     P S A +AAVNSKY+L+QVP+
Sbjct: 61 PS-----PASSAAAAAVNSKYFLDQVPV 82

BLAST of MS013456 vs. NCBI nr
Match: KAG6583880.1 (hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED+REAL SSSSSLKIDKFS +S 
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREAL-SSSSSLKIDKFSVSSL 60

Query: 61 MSPMAATPPSPATSAA 77
           S MAA+PPSPATSAA
Sbjct: 61 PSTMAASPPSPATSAA 75

BLAST of MS013456 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_023250 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+P+VLDTINEED REAL  SSSS KIDKFS  SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALV-SSSSFKIDKFSVPSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           SP        +++AA+NSKY+L+QVP+
Sbjct: 61 PSP-------DSSAAAINSKYFLDQVPV 80

BLAST of MS013456 vs. NCBI nr
Match: KAF7842889.1 (uncharacterized protein G2W53_005187 [Senna tora])

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALAS--SSSSLKIDKFSAASP 62
          A SR+ARFI E  PPQ V+VMR RT K+LDTI EED RE  +S  SSSS K    S++SP
Sbjct: 2  ANSRIARFIMEVAPPQYVTVMRHRTSKMLDTITEEDQREISSSNNSSSSPKGSSSSSSSP 61

Query: 63 MSPMAATPPSPATSAAV---NSKYYLNQV 87
          +SP++++P + A+SA++   NSKY+L +V
Sbjct: 62 LSPLSSSPSASASSASIPNGNSKYFLKEV 90

BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A5A7UJX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00970 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+PKVLDTINEED RE+LA SSSS KIDKFS +SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLA-SSSSFKIDKFSVSSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           S     P S A +AAVNSKY+L+QVP+
Sbjct: 61 PS-----PASSAAAAAVNSKYFLDQVPV 82

BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A0A0LYE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.0e-21
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP 60
          MAATSRLARFISEACPPQ VSVMRRR+P+VLDTINEED REAL  SSSS KIDKFS  SP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALV-SSSSFKIDKFSVPSP 60

Query: 61 MSPMAATPPSPATSAAVNSKYYLNQVPL 89
           SP        +++AA+NSKY+L+QVP+
Sbjct: 61 PSP-------DSSAAAINSKYFLDQVPV 80

BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A314XQS6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10926 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09
Identity = 49/91 (53.85%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALAS-----SSSSLKIDKF 60
          M A SRLARFI+E  PPQ VSVMR RT KVLDTINEE+   A  S     SSSS K    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SAASPMSPMAATPPSPATSAAVNSKYYLNQV 87
          S +SP  P  A+  S A +A   SKY+L +V
Sbjct: 61 STSSP--PSFASAASGAAAAGTESKYFLKEV 89

BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A2P6Q5Q7 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 3   ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASPMS 62
           A +RLARFI+EA PPQ+VSVMRRRT KVLDTI EED RE  + + S     K S+A P S
Sbjct: 53  ANARLARFITEAAPPQIVSVMRRRTSKVLDTITEED-REYASPNDSLNSSPKGSSALPSS 112

Query: 63  PMAATPPSPATSAAVNSKYYLNQV 87
             +A     A +A  ++KY+L  V
Sbjct: 113 SPSAPSFGSAAAAGTDAKYFLKGV 135

BLAST of MS013456 vs. ExPASy TrEMBL
Match: A0A218VVC5 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006114 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASP-- 62
          A SRLARF+ EA PPQ VSVMR RT K+LDTI+EE+ R    SS  S  +++ S+ S   
Sbjct: 2  ANSRLARFVMEAAPPQFVSVMRHRTTKMLDTISEEETRGEFTSSDHSKSLNRSSSFSQKN 61

Query: 63 MSPMAATPPSPATSAA------VNSKYYLNQVP 88
           S ++++ PS + SA+      V S+Y+ N+VP
Sbjct: 62 TSTLSSSAPSHSPSASRIAMTTVGSRYFYNEVP 94

BLAST of MS013456 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRRTPKVLDTINEEDYREALASSSSSLKIDKFSAASPM- 62
          ATSRLARFI+E  PPQ V+VMRRRT KVLDTI EE+ RE    S      +    +SP  
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEE-REVGTDSIFPSSFNSKKISSPFT 61

Query: 63 SPMAATPPSPATSAAVNSKYYLNQVPL---RSNFPIF 96
          SP +++  S + SA+  S   LN+ P+   R +FP+F
Sbjct: 62 SPYSSSVSSASASASCTSG--LNKFPVTENRGSFPVF 95

BLAST of MS013456 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQVVSVMRRR--TPKVLDTINEEDYRE 42
          ATSRLARF+SE  PPQ V+VMRR     + LDTI EE+ +E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7019500.19.6e-2785.88hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0054015.13.2e-2276.14hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK2070... [more]
KAG6583880.14.2e-2286.84hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65872.11.0e-2071.59hypothetical protein Csa_023250 [Cucumis sativus][more]
KAF7842889.11.1e-1153.93uncharacterized protein G2W53_005187 [Senna tora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UJX71.5e-2276.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYE65.0e-2171.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1[more]
A0A314XQS65.7e-0953.85Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_109... [more]
A0A2P6Q5Q72.2e-0852.38Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0014631 PE=4... [more]
A0A218VVC54.8e-0846.24Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006114 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G30260.12.3e-1047.42BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.11.3e-0560.98Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35101:SF12OS02G0162600 PROTEINcoord: 2..95
NoneNo IPR availablePANTHERPTHR35101OS02G0162600 PROTEINcoord: 2..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013456.1MS013456.1mRNA