MS011885.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS011885.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	outer envelope membrane protein 7-like
Location	scaffold1150: 200036 .. 200245 (+)
Sequence length	210
RNA-Seq Expression	MS011885.1
Synteny	MS011885.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAAAGCCGTCCGGGACCAAGCAAGCATTTGTTCTCTTCGGAGCTTTAGCGTTGGGTTGGCTCGCCATAGAGATGGCTTTCAAGCCCTTCCTCGATAAGGCGCGCTCGGCCATGGACAAGTCTGATCCCACTCGGGATCCCGACGACCTTGTCGATAATCTATCTGATCACAGGCCATCCGATGACGATGAGTCTACCACTGCT

mRNA sequence

ATGGGAAAAAAGCCGTCCGGGACCAAGCAAGCATTTGTTCTCTTCGGAGCTTTAGCGTTGGGTTGGCTCGCCATAGAGATGGCTTTCAAGCCCTTCCTCGATAAGGCGCGCTCGGCCATGGACAAGTCTGATCCCACTCGGGATCCCGACGACCTTGTCGATAATCTATCTGATCACAGGCCATCCGATGACGATGAGTCTACCACTGCT

Coding sequence (CDS)

ATGGGAAAAAAGCCGTCCGGGACCAAGCAAGCATTTGTTCTCTTCGGAGCTTTAGCGTTGGGTTGGCTCGCCATAGAGATGGCTTTCAAGCCCTTCCTCGATAAGGCGCGCTCGGCCATGGACAAGTCTGATCCCACTCGGGATCCCGACGACCTTGTCGATAATCTATCTGATCACAGGCCATCCGATGACGATGAGTCTACCACTGCT

Protein sequence

MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHRPSDDDESTTA

Homology

[Close]

BLAST of MS011885.1 vs. NCBI nr
Match: XP_022155586.1 (outer envelope membrane protein 7-like [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 PSDDDESTTA 71
          PSDDDESTTA
Sbjct: 61 PSDDDESTTA 70

[Close]

BLAST of MS011885.1 vs. NCBI nr
Match: XP_038888886.1 (outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888888.1 outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888889.1 outer envelope membrane protein 7-like [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-24
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSGTKQAF +FGALALGWLAIEMAFKPFLDKARSAMD SDP +DPDDLVDN SD  
Sbjct: 1  MGKKPSGTKQAFFVFGALALGWLAIEMAFKPFLDKARSAMDNSDPAQDPDDLVDNQSDQS 60

Query: 61 PSDDDESTTA 71
          PSDDD+STTA
Sbjct: 61 PSDDDQSTTA 70

[Close]

BLAST of MS011885.1 vs. NCBI nr
Match: XP_023553591.1 (outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 8.1e-23
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLDKARSAMD SDPTRDPDDL+D  SDH 
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 PSDDDESTTA 71
           SDDD STTA
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of MS011885.1 vs. NCBI nr
Match: XP_022963695.1 (outer envelope membrane protein 7-like [Cucurbita moschata] >XP_022963696.1 outer envelope membrane protein 7-like [Cucurbita moschata] >XP_022963697.1 outer envelope membrane protein 7-like [Cucurbita moschata] >KAG7011240.1 Outer envelope membrane protein 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.4 bits (285), Expect = 4.0e-22
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLDKARSAMD SDPTRDPDD +D  SDH 
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60

Query: 61 PSDDDESTTA 71
           SDDD STTA
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of MS011885.1 vs. NCBI nr
Match: XP_022967520.1 (outer envelope membrane protein 7-like [Cucurbita maxima] >XP_022967521.1 outer envelope membrane protein 7-like [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 8.9e-22
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSG+KQAF + GALALGWLAIE+AFKPFLDKARSAMD SDPTRDPDDL+D  SDH 
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEIAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 PSDDDESTTA 71
           SDDD ST A
Sbjct: 61 QSDDDRSTNA 70

[Close]

BLAST of MS011885.1 vs. ExPASy Swiss-Prot
Match: Q9SVC4 (Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 4  KPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDD 52
          K SG KQA V+  A+ALGWLAIE+AFKPFLDK RS++DKSDPT+DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

[Close]

BLAST of MS011885.1 vs. ExPASy TrEMBL
Match: A0A6J1DS29 (outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC111022685 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.6e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR
Sbjct: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60

Query: 61 PSDDDESTTA 71
          PSDDDESTTA
Sbjct: 61 PSDDDESTTA 70

[Close]

BLAST of MS011885.1 vs. ExPASy TrEMBL
Match: A0A6J1HGS4 (outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111463949 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSG+KQAF + GALALGWLAIEMAFKPFLDKARSAMD SDPTRDPDD +D  SDH 
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRLDKQSDHL 60

Query: 61 PSDDDESTTA 71
           SDDD STTA
Sbjct: 61 QSDDDRSTTA 70

[Close]

BLAST of MS011885.1 vs. ExPASy TrEMBL
Match: A0A6J1HUQ5 (outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111467002 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          MGKKPSG+KQAF + GALALGWLAIE+AFKPFLDKARSAMD SDPTRDPDDL+D  SDH 
Sbjct: 1  MGKKPSGSKQAFFILGALALGWLAIEIAFKPFLDKARSAMDNSDPTRDPDDLLDKQSDHL 60

Query: 61 PSDDDESTTA 71
           SDDD ST A
Sbjct: 61 QSDDDRSTNA 70

[Close]

BLAST of MS011885.1 vs. ExPASy TrEMBL
Match: A0A5A7URM9 (6.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00570 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 55/68 (80.88%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          M K+PSGT QAF +F ALA+GWLAIEMAFKPFLDKARSAMDKSDP RDPD+LVDN SDH 
Sbjct: 1  MSKRPSGTTQAFFVFSALAMGWLAIEMAFKPFLDKARSAMDKSDPARDPDELVDNQSDHT 60

Query: 61 PSDDDEST 69
           SDDD+ST
Sbjct: 61 SSDDDQST 68

[Close]

BLAST of MS011885.1 vs. ExPASy TrEMBL
Match: A0A0A0KJE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-15
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1  MGKKPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDDLVDNLSDHR 60
          M  K S TKQAF +FGALA+GWLAIEMAFKP L KARSAMDKSDP RDPD+L+    DH 
Sbjct: 1  MTNKSSETKQAFFVFGALAMGWLAIEMAFKPLLGKARSAMDKSDPARDPDELL----DHT 60

Query: 61 PSDDDESTT 70
           SDDD + T
Sbjct: 61 SSDDDRNAT 65

[Close]

BLAST of MS011885.1 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 4  KPSGTKQAFVLFGALALGWLAIEMAFKPFLDKARSAMDKSDPTRDPDD 52
          K SG KQA V+  A+ALGWLAIE+AFKPFLDK RS++DKSDPT+DPDD
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

[Close]

BLAST of MS011885.1 vs. TAIR 10
Match: AT3G63160.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 (TAIR:AT3G52420.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 8.6e-07
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 3  KKPSGTKQ-AFVLFGALALGWLAIEMAFKPFLDKARSAMDKSD 45
          +KP+G KQ A V+ G LA+GWLAIE+ FKP   K  S+ DKSD
Sbjct: 15 EKPTGKKQTATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSD 57

The following BLAST results are available for this feature:

BLAST of MS011885.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155586.1	2.0e-29	100.00	outer envelope membrane protein 7-like [Momordica charantia]	[more]
XP_038888886.1	3.3e-24	87.14	outer envelope membrane protein 7-like [Benincasa hispida] >XP_038888887.1 outer...	[more]
XP_023553591.1	8.1e-23	84.29	outer envelope membrane protein 7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963695.1	4.0e-22	82.86	outer envelope membrane protein 7-like [Cucurbita moschata] >XP_022963696.1 oute...	[more]
XP_022967520.1	8.9e-22	81.43	outer envelope membrane protein 7-like [Cucurbita maxima] >XP_022967521.1 outer ...	[more]

BLAST of MS011885.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVC4	2.1e-13	75.00	Outer envelope membrane protein 7 OS=Arabidopsis thaliana OX=3702 GN=OEP7 PE=1 S...	[more]

BLAST of MS011885.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DS29	9.6e-30	100.00	outer envelope membrane protein 7-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1HGS4	1.9e-22	82.86	outer envelope membrane protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HUQ5	4.3e-22	81.43	outer envelope membrane protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC1114670...	[more]
A0A5A7URM9	2.1e-21	80.88	6.7 kDa chloroplast outer envelope membrane protein OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KJE9	6.7e-15	69.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409970 PE=4 SV=1	[more]

BLAST of MS011885.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52420.1	1.5e-14	75.00	outer envelope membrane protein 7	[more]
AT3G63160.1	8.6e-07	58.14	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..70
None	No IPR available	PANTHER	PTHR33982:SF5	OUTER ENVELOPE MEMBRANE PROTEIN 7	coord: 4..61
IPR038944	Outer envelope membrane protein 7-like	PANTHER	PTHR33982	OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATED	coord: 4..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS011885	MS011885	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS011885.1-cds	MS011885.1-cds-scaffold1150:200036..200245	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS011885.1	MS011885.1-protein	polypeptide