MS009491.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009491.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S17, chloroplastic
Location	scaffold813: 1690026 .. 1690514 (+)
Sequence length	489
RNA-Seq Expression	MS009491.1
Synteny	MS009491.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAAATGTCCGTCATTCCCTCGTCGCTTCTGCAAATTCCTCCATTGAAGAGCCTCAAGAAGCTCTCGATTTCCACCCCTTTCCTCCATGGCTCCACCCCTCTCTCGCTCCTCTCTAAGCCACCCTCTTCTCCGTCCCCATCTCCCGCTCAAACCCCTAATTTCCTCCCCTCCATTAGGGCCATGAAGTCCCTCCAGGGCCGCGTCGTCTGCGCCACCAGCGACAAGACCGTCGCCGTCGAGGTCGTCCGATTGGCGCCTCATCCAAAGTACAAGCGCCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACGTCGTCGAGCTTGAGAAATGTCGCCCCATTAGCAAGACCAAGACGTTTCTGGCCATTCCGGTTCCGCCGAGAAATTCCAAGCCCAAAGCAGGGGAAGCTGCGCCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAGCAACAGCTT

mRNA sequence

GCAGAAATGTCCGTCATTCCCTCGTCGCTTCTGCAAATTCCTCCATTGAAGAGCCTCAAGAAGCTCTCGATTTCCACCCCTTTCCTCCATGGCTCCACCCCTCTCTCGCTCCTCTCTAAGCCACCCTCTTCTCCGTCCCCATCTCCCGCTCAAACCCCTAATTTCCTCCCCTCCATTAGGGCCATGAAGTCCCTCCAGGGCCGCGTCGTCTGCGCCACCAGCGACAAGACCGTCGCCGTCGAGGTCGTCCGATTGGCGCCTCATCCAAAGTACAAGCGCCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACGTCGTCGAGCTTGAGAAATGTCGCCCCATTAGCAAGACCAAGACGTTTCTGGCCATTCCGGTTCCGCCGAGAAATTCCAAGCCCAAAGCAGGGGAAGCTGCGCCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAGCAACAGCTT

Coding sequence (CDS)

GCAGAAATGTCCGTCATTCCCTCGTCGCTTCTGCAAATTCCTCCATTGAAGAGCCTCAAGAAGCTCTCGATTTCCACCCCTTTCCTCCATGGCTCCACCCCTCTCTCGCTCCTCTCTAAGCCACCCTCTTCTCCGTCCCCATCTCCCGCTCAAACCCCTAATTTCCTCCCCTCCATTAGGGCCATGAAGTCCCTCCAGGGCCGCGTCGTCTGCGCCACCAGCGACAAGACCGTCGCCGTCGAGGTCGTCCGATTGGCGCCTCATCCAAAGTACAAGCGCCGCATCAGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGAGACGTCGTCGAGCTTGAGAAATGTCGCCCCATTAGCAAGACCAAGACGTTTCTGGCCATTCCGGTTCCGCCGAGAAATTCCAAGCCCAAAGCAGGGGAAGCTGCGCCTGGGGAGCTCGGGATTCCATTGGAGTCTCAGCAGCAACAGCTT

Protein sequence

AEMSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL

Homology

[Close]

BLAST of MS009491.1 vs. NCBI nr
Match: XP_022150198.1 (30S ribosomal protein S17, chloroplastic [Momordica charantia])

HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 3   MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM 62
           MSVIPSSLL IPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM
Sbjct: 1   MSVIPSSLLPIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM 60

Query: 63  KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR 122
           KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR
Sbjct: 61  KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR 120

Query: 123 PISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL 164
           PISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL
Sbjct: 121 PISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL 161

[Close]

BLAST of MS009491.1 vs. NCBI nr
Match: XP_008462167.1 (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 2.9e-63
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 8   SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQG 67
           SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSKP SSPSP  +QTPNFLPSIRAM+SLQG
Sbjct: 8   SSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIRAMRSLQG 67

Query: 68  RVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKT 127
           RVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGD VELEKCRPISK 
Sbjct: 68  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKM 127

Query: 128 KTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL 164
           KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Sbjct: 128 KTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of MS009491.1 vs. NCBI nr
Match: XP_004141765.1 (30S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypothetical protein Csa_015845 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 134/162 (82.72%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 3   MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM 62
           +++  SSLLQIPP++SLKKLSIS+ FLHGSTPLS LSKP SS SP P+QTPNFLPSIRAM
Sbjct: 3   ITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIRAM 62

Query: 63  KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR 122
           +SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGD VELEKCR
Sbjct: 63  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCR 122

Query: 123 PISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL 164
           PISK KTFLAIPVP RNSK KA E    GELGIPLESQQ+Q+
Sbjct: 123 PISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of MS009491.1 vs. NCBI nr
Match: XP_023548191.1 (30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 132/155 (85.16%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 7   PSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQ 66
           PSS LQIPPL+ LK LS+ST FLHGS PLS LSKP  SPS S +QTPNFLPSI+AM+SLQ
Sbjct: 7   PSSFLQIPPLQRLKNLSVSTSFLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQ 66

Query: 67  GRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISK 126
           GRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGD VELEKCRPISK
Sbjct: 67  GRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISK 126

Query: 127 TKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ 162
            KTFLAIPVP RNSKPKA EA  GELGIPLESQQQ
Sbjct: 127 MKTFLAIPVPARNSKPKAAEAGAGELGIPLESQQQ 159

[Close]

BLAST of MS009491.1 vs. NCBI nr
Match: KAA0059310.1 (30S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal protein S17 [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 134/157 (85.35%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 8   SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQG 67
           SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSK  SSPSP  +QTPNFLPSIRAM+SLQG
Sbjct: 8   SSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIRAMRSLQG 67

Query: 68  RVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKT 127
           RVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGD VELEKCRPISK 
Sbjct: 68  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKM 127

Query: 128 KTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL 164
           KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Sbjct: 128 KTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of MS009491.1 vs. ExPASy Swiss-Prot
Match: P16180 (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS17 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-45
Identity = 100/143 (69.93%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 18  SLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKT 77
           SL+ L +S+PF HGSTPLS LSKP S P+    + P  +P IRAMK++QGRVVCATSDKT
Sbjct: 9   SLQALKLSSPFAHGSTPLSSLSKPNSFPN---HRMPALVPVIRAMKTMQGRVVCATSDKT 68

Query: 78  VAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPP 137
           VAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGDVV LEK RPISKTK+F+A+PV  
Sbjct: 69  VAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIA 128

Query: 138 RNSKPKAGEAAPGELGIPLESQQ 161
           R ++ KA       LG+PLESQQ
Sbjct: 129 RAAR-KAEAGGDELLGLPLESQQ 147

[Close]

BLAST of MS009491.1 vs. ExPASy Swiss-Prot
Match: P82137 (30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 PE=1 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-39
Identity = 101/158 (63.92%), Postives = 116/158 (73.42%), Query Frame = 0


Query: 9   SLLQIPPLKSLKKLSISTPFLHG-STPLSLL---SKPPSSPSPSPAQTPNFLPSIRAMKS 68
           SLL+ PPL S    S   PFLHG +T LSLL   S    S SP  + T    P I+AM+S
Sbjct: 6   SLLK-PPLSS----SNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRS 65

Query: 69  LQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPI 128
           +QG+V+CAT+DKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQFKVGD V+L+KCRPI
Sbjct: 66  MQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPI 125

Query: 129 SKTKTFLAIPVPPRNS---KPKAGEAAPGELGIPLESQ 160
           SKTKTFLA+    R S   +PK  +AA  ELGIPLESQ
Sbjct: 126 SKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQ 158

[Close]

BLAST of MS009491.1 vs. ExPASy Swiss-Prot
Match: P17092 (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-35
Identity = 80/127 (62.99%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 35  LSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVVRLAPHPKYKRR 94
           L+  S P SSP           P+I+AMK+++G+VVCA+ +KTVAVEV RLAPHPKY++R
Sbjct: 11  LNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKR 70

Query: 95  IRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGELGI 154
           IR+KKKYQAHDP+N FKVGD+V+L K RPISK KTFLA+P P R SK KAG +  GELGI
Sbjct: 71  IRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSK-KAGSS--GELGI 130

Query: 155 PLESQQQ 162
           PL+SQQ+
Sbjct: 131 PLQSQQE 134

[Close]

BLAST of MS009491.1 vs. ExPASy Swiss-Prot
Match: Q9TJN6 (30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-30
Identity = 79/130 (60.77%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 37  LLSKP--PSSPSPSPAQTPNFLPSIR--AMKSLQGRVVCATSDKTVAVEVVRLAPHPKYK 96
           LLS P    SP P P  +    P++R  A + L GRVV   +DKTV VEVVRLAPHPKYK
Sbjct: 3   LLSSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKYK 62

Query: 97  RRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPKAGEAAPGEL 156
           RR RIKKKYQAHDPDNQFKVGDVVEL+  RPISKTK FLAIP+PPR+++ K+      +L
Sbjct: 63  RRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS------QL 122

Query: 157 GIPLESQQQQ 163
             PL+S   Q
Sbjct: 123 LPPLQSDDDQ 126

[Close]

BLAST of MS009491.1 vs. ExPASy Swiss-Prot
Match: Q9ZST1 (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPS17 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.7e-30
Identity = 79/138 (57.25%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 24  ISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKTVAVEVV 83
           ++TPF+  S+P+ +     S  SP           I+A K L GRVV   +DKTV VEVV
Sbjct: 3   LTTPFV--SSPVRVQGNGGSGASPWAGAATAL--RIQAAKQLTGRVVTTKADKTVGVEVV 62

Query: 84  RLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPPRNSKPK 143
           RLAPHPKYKRR RIKKKYQAHDPDNQFKVGDVVEL + RPISKTK FLA+P+PPR+++ K
Sbjct: 63  RLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRK 122

Query: 144 AGEAAPGELGIPLESQQQ 162
           +      +L  PL+SQ Q
Sbjct: 123 S------QLLPPLQSQSQ 130

[Close]

BLAST of MS009491.1 vs. ExPASy TrEMBL
Match: A0A6J1D8T2 (30S ribosomal protein S17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018425 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.1e-80
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 3   MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM 62
           MSVIPSSLL IPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM
Sbjct: 1   MSVIPSSLLPIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM 60

Query: 63  KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR 122
           KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR
Sbjct: 61  KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR 120

Query: 123 PISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL 164
           PISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL
Sbjct: 121 PISKTKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQQL 161

[Close]

BLAST of MS009491.1 vs. ExPASy TrEMBL
Match: A0A1S3CGC8 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.4e-63
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 8   SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQG 67
           SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSKP SSPSP  +QTPNFLPSIRAM+SLQG
Sbjct: 8   SSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKPSSSPSPLASQTPNFLPSIRAMRSLQG 67

Query: 68  RVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKT 127
           RVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGD VELEKCRPISK 
Sbjct: 68  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKM 127

Query: 128 KTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL 164
           KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Sbjct: 128 KTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of MS009491.1 vs. ExPASy TrEMBL
Match: A0A0A0K952 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.3e-63
Identity = 134/162 (82.72%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 3   MSVIPSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAM 62
           +++  SSLLQIPP++SLKKLSIS+ FLHGSTPLS LSKP SS SP P+QTPNFLPSIRAM
Sbjct: 3   ITLTSSSLLQIPPVQSLKKLSISSSFLHGSTPLSFLSKPSSSSSPFPSQTPNFLPSIRAM 62

Query: 63  KSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCR 122
           +SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF+VGD VELEKCR
Sbjct: 63  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCR 122

Query: 123 PISKTKTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL 164
           PISK KTFLAIPVP RNSK KA E    GELGIPLESQQ+Q+
Sbjct: 123 PISKMKTFLAIPVPARNSKKKAVEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of MS009491.1 vs. ExPASy TrEMBL
Match: A0A5A7UW29 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002170 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 134/157 (85.35%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 8   SSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQG 67
           SSLLQIPPL+SLKKLSIS+ FLHGSTPLS LSK  SSPSP  +QTPNFLPSIRAM+SLQG
Sbjct: 8   SSLLQIPPLQSLKKLSISSSFLHGSTPLSFLSKASSSPSPLASQTPNFLPSIRAMRSLQG 67

Query: 68  RVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKT 127
           RVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGD VELEKCRPISK 
Sbjct: 68  RVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKM 127

Query: 128 KTFLAIPVPPRNSKPKAGEAAP-GELGIPLESQQQQL 164
           KTFLAIPVP R SK KA E    GELGIPLESQQ+Q+
Sbjct: 128 KTFLAIPVPARTSKKKAAEGGEGGELGIPLESQQEQV 164

[Close]

BLAST of MS009491.1 vs. ExPASy TrEMBL
Match: A0A6J1GQP3 (30S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456201 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 132/155 (85.16%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 7   PSSLLQIPPLKSLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQ 66
           PSS LQIPPL+ LK LSIST FLHGS PLS LSKP  SPS S +QTPNFLPSI+AM+SLQ
Sbjct: 6   PSSFLQIPPLQRLKNLSISTSFLHGSVPLSFLSKP--SPSLSASQTPNFLPSIKAMRSLQ 65

Query: 67  GRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISK 126
           GRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN+FKVGD VELEKCRPISK
Sbjct: 66  GRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNKFKVGDFVELEKCRPISK 125

Query: 127 TKTFLAIPVPPRNSKPKAGEAAPGELGIPLESQQQ 162
            KTFLAIPVP RNSKPKA EA  GELGIPLESQ+Q
Sbjct: 126 MKTFLAIPVPARNSKPKAAEAGAGELGIPLESQEQ 158

[Close]

BLAST of MS009491.1 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 182.2 bits (461), Expect = 3.4e-46
Identity = 100/143 (69.93%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 18  SLKKLSISTPFLHGSTPLSLLSKPPSSPSPSPAQTPNFLPSIRAMKSLQGRVVCATSDKT 77
           SL+ L +S+PF HGSTPLS LSKP S P+    + P  +P IRAMK++QGRVVCATSDKT
Sbjct: 9   SLQALKLSSPFAHGSTPLSSLSKPNSFPN---HRMPALVPVIRAMKTMQGRVVCATSDKT 68

Query: 78  VAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDVVELEKCRPISKTKTFLAIPVPP 137
           VAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGDVV LEK RPISKTK+F+A+PV  
Sbjct: 69  VAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIA 128

Query: 138 RNSKPKAGEAAPGELGIPLESQQ 161
           R ++ KA       LG+PLESQQ
Sbjct: 129 RAAR-KAEAGGDELLGLPLESQQ 147

The following BLAST results are available for this feature:

BLAST of MS009491.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150198.1	1.7e-79	99.38	30S ribosomal protein S17, chloroplastic [Momordica charantia]	[more]
XP_008462167.1	2.9e-63	85.99	PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo]	[more]
XP_004141765.1	1.1e-62	82.72	30S ribosomal protein S17, chloroplastic [Cucumis sativus] >KGN45384.1 hypotheti...	[more]
XP_023548191.1	1.9e-62	85.16	30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAA0059310.1	2.4e-62	85.35	30S ribosomal protein S17 [Cucumis melo var. makuwa] >TYK04018.1 30S ribosomal p...	[more]

BLAST of MS009491.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16180	4.8e-45	69.93	30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82137	1.8e-39	63.92	30S ribosomal protein S17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS17 P...	[more]
P17092	1.5e-35	62.99	30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=...	[more]
Q9TJN6	1.5e-30	60.77	30S ribosomal protein S17, chloroplastic OS=Zea mays OX=4577 GN=RPS17 PE=2 SV=1	[more]
Q9ZST1	5.7e-30	57.25	30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of MS009491.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8T2	8.1e-80	99.38	30S ribosomal protein S17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3CGC8	1.4e-63	85.99	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500591...	[more]
A0A0A0K952	5.3e-63	82.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446990 PE=3 SV=1	[more]
A0A5A7UW29	1.2e-62	85.35	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1GQP3	1.5e-62	85.16	30S ribosomal protein S17, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of MS009491.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79850.1	3.4e-46	69.93	ribosomal protein S17	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 81..104 score: 34.25 coord: 123..130 score: 63.25 coord: 113..123 score: 53.82
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 67..130 e-value: 7.5E-25 score: 86.9
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 34..162
None	No IPR available	GENE3D	2.40.50.140		coord: 61..150 e-value: 3.4E-26 score: 93.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..55
None	No IPR available	PANTHER	PTHR10744:SF7	30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC	coord: 34..162
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 113..125
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 62..137 score: 18.352327
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 62..138

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009491	MS009491	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009491.1-cds	MS009491.1-cds-scaffold813:1690026..1690514	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009491.1	MS009491.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome