MS008113.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS008113.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold703: 292916 .. 293263 (-)
Sequence length	348
RNA-Seq Expression	MS008113.1
Synteny	MS008113.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCACCTCCCAAGAAAATTTGGAACCGTTTGGCCTCCAAAGTGATATCGAAGCTGAGCCGTTTTCCGAGGCCCGAGGCCATAACCAGAACCACGCGCCGCCTTCTGGGCCGCCTCGGCACCGCCGACCCCGCCGGAGACCACCGCGGGCTCTGCCGCTGCAGCTGCCACCGGCTGCAGGTGTACCGGAGCTTTTTGAATAATGGGTTGCAAGTTGAGGGGGAAGAAGATCGAGGCGGTGAAAATGGGGAGTTTGTTGAAGATGATCTTGCTGTGGATGAAAGGGCTGAGGAGTTTATTGCTAAGTTCCATGAAAGTTTGAAGCTTGAAAGATTGCAACATTTT

mRNA sequence

ATGCTTCCACCTCCCAAGAAAATTTGGAACCGTTTGGCCTCCAAAGTGATATCGAAGCTGAGCCGTTTTCCGAGGCCCGAGGCCATAACCAGAACCACGCGCCGCCTTCTGGGCCGCCTCGGCACCGCCGACCCCGCCGGAGACCACCGCGGGCTCTGCCGCTGCAGCTGCCACCGGCTGCAGGTGTACCGGAGCTTTTTGAATAATGGGTTGCAAGTTGAGGGGGAAGAAGATCGAGGCGGTGAAAATGGGGAGTTTGTTGAAGATGATCTTGCTGTGGATGAAAGGGCTGAGGAGTTTATTGCTAAGTTCCATGAAAGTTTGAAGCTTGAAAGATTGCAACATTTT

Coding sequence (CDS)

ATGCTTCCACCTCCCAAGAAAATTTGGAACCGTTTGGCCTCCAAAGTGATATCGAAGCTGAGCCGTTTTCCGAGGCCCGAGGCCATAACCAGAACCACGCGCCGCCTTCTGGGCCGCCTCGGCACCGCCGACCCCGCCGGAGACCACCGCGGGCTCTGCCGCTGCAGCTGCCACCGGCTGCAGGTGTACCGGAGCTTTTTGAATAATGGGTTGCAAGTTGAGGGGGAAGAAGATCGAGGCGGTGAAAATGGGGAGTTTGTTGAAGATGATCTTGCTGTGGATGAAAGGGCTGAGGAGTTTATTGCTAAGTTCCATGAAAGTTTGAAGCTTGAAAGATTGCAACATTTT

Protein sequence

MLPPPKKIWNRLASKVISKLSRFPRPEAITRTTRRLLGRLGTADPAGDHRGLCRCSCHRLQVYRSFLNNGLQVEGEEDRGGENGEFVEDDLAVDERAEEFIAKFHESLKLERLQHF

Homology

[Close]

BLAST of MS008113.1 vs. NCBI nr
Match: KGN44055.1 (hypothetical protein Csa_015429 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-23
Identity = 76/124 (61.29%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MLPPPKKIWNRLASKVISKLSR-FPRP-EAITRTTRRLLGRLGTADPAGDHRGLCRCSCH 60
           MLPPPKK+WNR ASKVI KL R F +P E+ITRTTRR L RLG++D +G  R  CRCSCH
Sbjct: 1   MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSG--RRCCRCSCH 60

Query: 61  R-----LQVYRSFLNN-GLQVEGEEDRGGENGEFVEDDLAVDERAEEFIAKFHESLKLER 117
                 LQ   SF NN       E +     GE +ED+ AVDE+AEEFIAKFHESLKLER
Sbjct: 61  DQPEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEDE-AVDEKAEEFIAKFHESLKLER 120

[Close]

BLAST of MS008113.1 vs. ExPASy TrEMBL
Match: A0A0A0K332 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G145980 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-23
Identity = 76/124 (61.29%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 1   MLPPPKKIWNRLASKVISKLSR-FPRP-EAITRTTRRLLGRLGTADPAGDHRGLCRCSCH 60
           MLPPPKK+WNR ASKVI KL R F +P E+ITRTTRR L RLG++D +G  R  CRCSCH
Sbjct: 1   MLPPPKKVWNRFASKVILKLGRGFSKPSESITRTTRRFLSRLGSSDSSG--RRCCRCSCH 60

Query: 61  R-----LQVYRSFLNN-GLQVEGEEDRGGENGEFVEDDLAVDERAEEFIAKFHESLKLER 117
                 LQ   SF NN       E +     GE +ED+ AVDE+AEEFIAKFHESLKLER
Sbjct: 61  DQPEYWLQDRPSFGNNCNTNYYMEVEFENVEGEELEDE-AVDEKAEEFIAKFHESLKLER 120

The following BLAST results are available for this feature:

BLAST of MS008113.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44055.1	3.5e-23	61.29	hypothetical protein Csa_015429 [Cucumis sativus]	[more]

BLAST of MS008113.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008113.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K332	1.7e-23	61.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G145980 PE=4 SV=1	[more]

BLAST of MS008113.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 92..114 e-value: 7.0E-10 score: 38.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS008113	MS008113	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS008113.1-cds	MS008113.1-cds-scaffold703:292916..293263	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS008113.1	MS008113.1-protein	polypeptide