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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCATTTGGGTGTGTTGAGTCGGGGTCAAGATTGCATCTTACAAGTCGTCACTTACAGACAACGGAAGCTGTTCACTCCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCA mRNA sequence ATGCATTTGGGTGTGTTGAGTCGGGGTCAAGATTGCATCTTACAAGTCGTCACTTACAGAAACGGAAGCTGTTCACTCCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCA Coding sequence (CDS) ATGCATTTGGGTGTGTTGAGTCGGGGTCAAGATTGCATCTTACAAGTCGTCACTTACAGAAACGGAAGCTGTTCACTCCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCA Protein sequence MHLGVLSRGQDCILQVVTYRNGSCSLPVVTNSCIIMKALLTIALA
Homology
BLAST of MS006188.1 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus]) HSP 1 Score: 63.2 bits (152), Expect = 6.8e-07 Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 1 MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46 MH+GVLS G DCILQV T R GSCSL VVTNSCI IMKALLTIALA Sbjct: 1 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 48
BLAST of MS006188.1 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa]) HSP 1 Score: 63.2 bits (152), Expect = 6.8e-07 Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 1 MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46 MH+GVLS G DCILQV T R GSCSL VVTNSCI IMKALLTIALA Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 912
BLAST of MS006188.1 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07 Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 1 MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46 MH+GVLS G DCILQV T R GSCSL VVTNSCI IMKALLTIALA Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 912
BLAST of MS006188.1 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07 Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 Query: 1 MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46 MH+GVLS G DCILQV T R GSCSL VVTNSCI IMKALLTIALA Sbjct: 1 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 48
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN49854.1 | 6.8e-07 | 79.17 | hypothetical protein Csa_000509 [Cucumis sativus] | [more] |
KAA0042542.1 | 6.8e-07 | 79.17 | importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TGL2 | 3.3e-07 | 79.17 | Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KLW1 | 3.3e-07 | 79.17 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
MS006188 | MS006188 | gene |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
MS006188.1-cds | MS006188.1-cds-scaffold96:980200..980259 | CDS |
MS006188.1-cds | MS006188.1-cds-scaffold96:980261..980335 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
MS006188.1 | MS006188.1-protein | polypeptide |
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