MS006188 (gene) Bitter gourd (TR) v1

Overview
NameMS006188
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionImportin subunit beta-1
Locationscaffold96: 980200 .. 980335 (+)
RNA-Seq ExpressionMS006188
SyntenyMS006188
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTGGGTGTGTTGAGTCGGGGTCAAGATTGCATCTTACAAGTCGTCACTTACAGACAACGGAAGCTGTTCACTCCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCA

mRNA sequence

ATGCATTTGGGTGTGTTGAGTCGGGGTCAAGATTGCATCTTACAAGTCGTCACTTACAGAAACGGAAGCTGTTCACTCCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCA

Coding sequence (CDS)

ATGCATTTGGGTGTGTTGAGTCGGGGTCAAGATTGCATCTTACAAGTCGTCACTTACAGAAACGGAAGCTGTTCACTCCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCA

Protein sequence

MHLGVLSRGQDCILQVVTYRNGSCSLPVVTNSCIIMKALLTIALA
Homology
[Close]
BLAST of MS006188 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 6.8e-07
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1  MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46
          MH+GVLS G DCILQV T R  GSCSL VVTNSCI  IMKALLTIALA
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 48

[Close]
BLAST of MS006188 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 6.8e-07
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1   MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46
           MH+GVLS G DCILQV T R  GSCSL VVTNSCI  IMKALLTIALA
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 912

[Close]
BLAST of MS006188 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1   MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46
           MH+GVLS G DCILQV T R  GSCSL VVTNSCI  IMKALLTIALA
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 912

[Close]
BLAST of MS006188 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-07
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1  MHLGVLSRGQDCILQVVTYR-NGSCSLPVVTNSCI--IMKALLTIALA 46
          MH+GVLS G DCILQV T R  GSCSL VVTNSCI  IMKALLTIALA
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALA 48

The following BLAST results are available for this feature:
BLAST of MS006188 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49854.16.8e-0779.17hypothetical protein Csa_000509 [Cucumis sativus][more]
KAA0042542.16.8e-0779.17importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ... [more]
BLAST of MS006188 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS006188 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TGL23.3e-0779.17Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KLW13.3e-0779.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1[more]
BLAST of MS006188 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006188.1MS006188.1mRNA