MS004231.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS004231.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold92: 1011496 .. 1011702 (-)
Sequence length	207
RNA-Seq Expression	MS004231.1
Synteny	MS004231.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTATATGCACAAATTTCATTAAGGATGTGTTCGATCAACATAATGAGACCAGGGAAAGTTACCAGATTGAAGCCCATGTAAAAGATGATATATATTATGTTGTCTTAAACGAGGCAATGAAAGGTTATTGCTCGACATATGACTTGAGAGTAGCAAGAAAAACTGAGAATGTGAAGGATGAAGACCTATATTTGGAAGGTTTGACA

mRNA sequence

GGTATATGCACAAATTTCATTAAGGATGTGTTCGATCAACATAATGAGACCAGGGAAAGTTACCAGATTGAAGCCCATGTAAAAGATGATATATATTATGTTGTCTTAAACGAGGCAATGAAAGGTTATTGCTCGACATATGACTTGAGAGTAGCAAGAAAAACTGAGAATGTGAAGGATGAAGACCTATATTTGGAAGGTTTGACA

Coding sequence (CDS)

GGTATATGCACAAATTTCATTAAGGATGTGTTCGATCAACATAATGAGACCAGGGAAAGTTACCAGATTGAAGCCCATGTAAAAGATGATATATATTATGTTGTCTTAAACGAGGCAATGAAAGGTTATTGCTCGACATATGACTTGAGAGTAGCAAGAAAAACTGAGAATGTGAAGGATGAAGACCTATATTTGGAAGGTTTGACA

Protein sequence

GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKDEDLYLEGLT

Homology

[Close]

BLAST of MS004231.1 vs. NCBI nr
Match: XP_022139213.1 (uncharacterized protein LOC111010182 [Momordica charantia])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GICTNFIKDVFDQHNET ESY+IEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD
Sbjct: 724 GICTNFIKDVFDQHNETMESYKIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 783

Query: 61  EDLYLEGLT 70
           EDLYLEGLT
Sbjct: 784 EDLYLEGLT 792

[Close]

BLAST of MS004231.1 vs. NCBI nr
Match: XP_022985013.1 (uncharacterized protein LOC111483104 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GIC  FI+D+FDQ +ET ESY IEA +KDDIY++   EAMKGY          + ++VKD
Sbjct: 503 GICRIFIRDMFDQLDETMESYSIEAQIKDDIYHIFFMEAMKGY----------RLQDVKD 561

Query: 61  EDLYLEGLT 70
           E+LYLEGLT
Sbjct: 563 ENLYLEGLT 561

[Close]

BLAST of MS004231.1 vs. NCBI nr
Match: KAG6601161.1 (hypothetical protein SDJN03_06394, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GIC  FI+D+F+Q +ET ESY+IEA +KDDIY++   EAMKGY          + ++VKD
Sbjct: 496 GICRIFIRDMFNQLDETMESYKIEAQIKDDIYHIFFMEAMKGY----------RLQDVKD 554

Query: 61  EDLYLEGLT 70
           E+LYLEGLT
Sbjct: 556 ENLYLEGLT 554

[Close]

BLAST of MS004231.1 vs. NCBI nr
Match: XP_022956940.1 (uncharacterized protein LOC111458475 [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GIC  FI+D+F+Q +ET ESY+IEA +KDDIY++   EAMKGY          + ++VKD
Sbjct: 496 GICRIFIRDMFNQLDETMESYKIEAQIKDDIYHIFFMEAMKGY----------RLQDVKD 554

Query: 61  EDLYLEGLT 70
           E+LYLEGLT
Sbjct: 556 ENLYLEGLT 554

[Close]

BLAST of MS004231.1 vs. NCBI nr
Match: KAG7031963.1 (WPP domain-associated protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GIC  FI+D+F+Q +ET ESY+IEA +KDDIY++   EAMKGY          + ++VKD
Sbjct: 496 GICRIFIRDMFNQLDETMESYKIEAQIKDDIYHIFFMEAMKGY----------RLQDVKD 554

Query: 61  EDLYLEGLT 70
           E+LYLEGLT
Sbjct: 556 ENLYLEGLT 554

[Close]

BLAST of MS004231.1 vs. ExPASy TrEMBL
Match: A0A6J1CF63 (uncharacterized protein LOC111010182 OS=Momordica charantia OX=3673 GN=LOC111010182 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-31
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GICTNFIKDVFDQHNET ESY+IEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD
Sbjct: 724 GICTNFIKDVFDQHNETMESYKIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 783

Query: 61  EDLYLEGLT 70
           EDLYLEGLT
Sbjct: 784 EDLYLEGLT 792

[Close]

BLAST of MS004231.1 vs. ExPASy TrEMBL
Match: A0A6J1JCB6 (uncharacterized protein LOC111483104 OS=Cucurbita maxima OX=3661 GN=LOC111483104 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GIC  FI+D+FDQ +ET ESY IEA +KDDIY++   EAMKGY          + ++VKD
Sbjct: 503 GICRIFIRDMFDQLDETMESYSIEAQIKDDIYHIFFMEAMKGY----------RLQDVKD 561

Query: 61  EDLYLEGLT 70
           E+LYLEGLT
Sbjct: 563 ENLYLEGLT 561

[Close]

BLAST of MS004231.1 vs. ExPASy TrEMBL
Match: A0A6J1GZ55 (uncharacterized protein LOC111458475 OS=Cucurbita moschata OX=3662 GN=LOC111458475 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTENVKD 60
           GIC  FI+D+F+Q +ET ESY+IEA +KDDIY++   EAMKGY          + ++VKD
Sbjct: 496 GICRIFIRDMFNQLDETMESYKIEAQIKDDIYHIFFMEAMKGY----------RLQDVKD 554

Query: 61  EDLYLEGLT 70
           E+LYLEGLT
Sbjct: 556 ENLYLEGLT 554

[Close]

BLAST of MS004231.1 vs. ExPASy TrEMBL
Match: A0A0A0KWT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-06
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   GICTNFIKDVFDQHNETRESYQIEAHVKDDIYYVVLNEAMKGYCSTYDLRVARKTE 57
           GIC + I+++F+Q +ET +S  IEA +KDDIY+VV  E M+ YCS  DL + R  E
Sbjct: 476 GICRDLIRNMFNQLDETMKSNHIEAKIKDDIYHVVFKETMEDYCSINDLGLHRLQE 531

The following BLAST results are available for this feature:

BLAST of MS004231.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139213.1	1.0e-30	97.10	uncharacterized protein LOC111010182 [Momordica charantia]	[more]
XP_022985013.1	2.4e-11	56.52	uncharacterized protein LOC111483104 [Cucurbita maxima]	[more]
KAG6601161.1	7.0e-11	55.07	hypothetical protein SDJN03_06394, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022956940.1	7.0e-11	55.07	uncharacterized protein LOC111458475 [Cucurbita moschata]	[more]
KAG7031963.1	7.0e-11	55.07	WPP domain-associated protein, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of MS004231.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004231.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CF63	5.0e-31	97.10	uncharacterized protein LOC111010182 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1JCB6	1.2e-11	56.52	uncharacterized protein LOC111483104 OS=Cucurbita maxima OX=3661 GN=LOC111483104...	[more]
A0A6J1GZ55	3.4e-11	55.07	uncharacterized protein LOC111458475 OS=Cucurbita moschata OX=3662 GN=LOC1114584...	[more]
A0A0A0KWT8	4.3e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623400 PE=4 SV=1	[more]

BLAST of MS004231.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS004231	MS004231	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS004231.1-cds	MS004231.1-cds-scaffold92:1011496..1011702	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS004231.1	MS004231.1-protein	polypeptide