MS002891.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002891.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold359: 497137 .. 497553 (-)
Sequence length	417
RNA-Seq Expression	MS002891.1
Synteny	MS002891.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCATCGTCTTGCCTTGCAGTCAGTCTCCATCGAAGAAGGTAAGAGGGCTCGGAAAAGCCACTCGGGCGGCTACAACAGTCGATCCTGCTACTGAAAATGGTAATGACCCTCTTCTCCATGCTTTTACCTTGCCAACCAAAGTCAGCCCCCAAATTGGGGAGGTTCAAAATGTTGTTCCGTGCCTGAAAGAGCTCGAAAATCTTCTGGTTTCCTCAAAGATAACCTACTCGGATGGGGGAGGAGCAAGGAAGGTGAAAATTGTGGTAACTAAGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGTTTCAGTGTCGGCAAAGATTGTTGAGTTATACAGGCCCCCGCAGAGGGTGTAAAAAATGGCGGCCGTCGTTGTCTGTCATTTCGGAGGAACAAGATTTT

mRNA sequence

ATGGGAAACTGCATCGTCTTGCCTTGCAGTCAGTCTCCATCGAAGAAGGTAAGAGGGCTCGGAAAAGCCACTCGGGCGGCTACAACAGTCGATCCTGCTACTGAAAATGGTAATGACCCTCTTCTCCATGCTTTTACCTTGCCAACCAAAGTCAGCCCCCAAATTGGGGAGGTTCAAAATGTTGTTCCGTGCCTGAAAGAGCTCGAAAATCTTCTGGTTTCCTCAAAGATAACCTACTCGGATGGGGGAGGAGCAAGGAAGGTGAAAATTGTGGTAACTAAGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGTTTCAGTGTCGGCAAAGATTGTTGAGTTATACAGGCCCCCGCAGAGGGTGTAAAAAATGGCGGCCGTCGTTGTCTGTCATTTCGGAGGAACAAGATTTT

Coding sequence (CDS)

ATGGGAAACTGCATCGTCTTGCCTTGCAGTCAGTCTCCATCGAAGAAGGTAAGAGGGCTCGGAAAAGCCACTCGGGCGGCTACAACAGTCGATCCTGCTACTGAAAATGGTAATGACCCTCTTCTCCATGCTTTTACCTTGCCAACCAAAGTCAGCCCCCAAATTGGGGAGGTTCAAAATGTTGTTCCGTGCCTGAAAGAGCTCGAAAATCTTCTGGTTTCCTCAAAGATAACCTACTCGGATGGGGGAGGAGCAAGGAAGGTGAAAATTGTGGTAACTAAGGAACAGTTTAAGTTGCTGTTGGCAAATGCAAAGAAGTTTCAGTGTCGGCAAAGATTGTTGAGTTATACAGGCCCCCGCAGAGGGTGTAAAAAATGGCGGCCGTCGTTGTCTGTCATTTCGGAGGAACAAGATTTT

Protein sequence

MGNCIVLPCSQSPSKKVRGLGKATRAATTVDPATENGNDPLLHAFTLPTKVSPQIGEVQNVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQRLLSYTGPRRGCKKWRPSLSVISEEQDF

Homology

[Close]

BLAST of MS002891.1 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 103/140 (73.57%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKVRGLGKATRAATT-VDPATENGNDPLLHAFTLPTKVSPQIGEVQ 60
           MGNCIVLP  +SP KK+RGL KAT  ATT V  ATE GNDPLL  F   TK S Q+ EV+
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQRLLSYTGP 120
           NVVPCLKELENLL S KI YSD  GA+KVKIVVTKEQFKLLL+NAKK Q R RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCKKWRPSLSVISEEQDF 140
           R+GCK WRP+LS ISEE+DF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of MS002891.1 vs. NCBI nr
Match: XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-43
Identity = 97/134 (72.39%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 6   VLPCSQSPSKKVRGLGKATRAATTVDPATENGNDPLLHAFTLPTKVSPQIGEVQNVVPCL 65
           VL   Q P KK+R L KAT      D ATE G DPLL  FT PT+   Q+GEVQN+VPCL
Sbjct: 10  VLMPYQLPQKKLRELEKAT------DSATECGKDPLLLDFTSPTRTILQVGEVQNIVPCL 69

Query: 66  KELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQRLLSYTGPRRGCKK 125
           KELENLL SSKI YSDG GARKVKIVVTKEQFKLLLANAKK Q R RLLSYTGPR+GC+K
Sbjct: 70  KELENLLASSKIAYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHRLLSYTGPRKGCRK 129

Query: 126 WRPSLSVISEEQDF 140
           WRP+LS ISEE+DF
Sbjct: 130 WRPTLSAISEEEDF 137

[Close]

BLAST of MS002891.1 vs. NCBI nr
Match: KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 3.0e-37
Identity = 89/121 (73.55%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKVRGLGKATRAAT-TVDPATENGNDPLLHAFTLPTKVSPQIGEVQ 60
           MGNCIVLP  +SP KK++GL KAT  AT  V  A+E GNDPLL      TK S Q+GEV+
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  NVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQRLLSYTGP 120
           NVVPCLKELENLL SSKI YSDGGGA+KVKIVVT+EQFKLLLANAKK Q R RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

[Close]

BLAST of MS002891.1 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-36
Identity = 84/112 (75.00%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKVRGLGKATRAATTVDPATENGNDPLLHAFTLPTKVSPQIGEVQN 60
           MGNCIVLPC +SP KK+RG+ KAT  ATTVD ATE  ND LLH F+  T+ S Q+GEV++
Sbjct: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATTVDSATECCNDHLLHDFSSSTRTSLQVGEVRD 60

Query: 61  VVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQR 113
           VVPCLKELE LLVSSKI YSDG GARKVKIVVTKEQFKLLLANAKK Q R R
Sbjct: 61  VVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHR 112

[Close]

BLAST of MS002891.1 vs. NCBI nr
Match: XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.1 bits (388), Expect = 9.0e-34
Identity = 85/138 (61.59%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKVRGLGKATRAATTVDPATENGNDPLLHAFTLPTKVSPQIGEVQN 60
           MGNCI+LPC  SPSK +     +   AT VD ATE GNDPLL                 +
Sbjct: 136 MGNCIILPCVHSPSKNL-----SPELATVVDSATEQGNDPLL-----------------D 195

Query: 61  VVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQRLLSYTGPR 120
           VVPCLKELENLLV  K  YS GGGAR+VKIVVT+EQFKLLLANAKK Q   RLLSY GP 
Sbjct: 196 VVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGPG 251

Query: 121 RGCKKWRPSLSVISEEQD 139
           RG +KWRP LSVISEE++
Sbjct: 256 RGRRKWRPMLSVISEEEE 251

[Close]

BLAST of MS002891.1 vs. ExPASy TrEMBL
Match: A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.7e-47
Identity = 103/140 (73.57%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKVRGLGKATRAATT-VDPATENGNDPLLHAFTLPTKVSPQIGEVQ 60
           MGNCIVLP  +SP KK+RGL KAT  ATT V  ATE GNDPLL  F   TK S Q+ EV+
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQRLLSYTGP 120
           NVVPCLKELENLL S KI YSD  GA+KVKIVVTKEQFKLLL+NAKK Q R RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RRGCKKWRPSLSVISEEQDF 140
           R+GCK WRP+LS ISEE+DF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of MS002891.1 vs. ExPASy TrEMBL
Match: A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 89/121 (73.55%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKVRGLGKATRAAT-TVDPATENGNDPLLHAFTLPTKVSPQIGEVQ 60
           MGNCIVLP  +SP KK++GL KAT  AT  V  A+E GNDPLL      TK S Q+GEV+
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  NVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQCRQRLLSYTGP 120
           NVVPCLKELENLL SSKI YSDGGGA+KVKIVVT+EQFKLLLANAKK Q R RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

[Close]

BLAST of MS002891.1 vs. ExPASy TrEMBL
Match: A0A314XUU1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_29074 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-10
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKV-----RGLGKATRAATTVDPATENG--NDPLLH---AFT-LPT 60
           MGNC+ + C   P +K+     +G  +  +A+T ++  T        L+H    FT LP 
Sbjct: 1   MGNCLHVLC-HPPQEKIKVVIFKGGVREFKASTPIEEITSGPYIGYKLVHHVQPFTPLPP 60

Query: 61  KVSPQIGEVQNVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQC 120
               + GEV ++VP L  L   LV SKI + +    +K+KIVVT+EQ +LLL +A KF+ 
Sbjct: 61  NTKLEPGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRS 120

Query: 121 RQRL---LSYTGPRRGCKKWRPSLSVISEEQDF 140
            + +   LS      G  KWRPSL++I E   F
Sbjct: 121 PKEIGVQLSGRSGLEGPPKWRPSLAIIPEVHSF 152

[Close]

BLAST of MS002891.1 vs. ExPASy TrEMBL
Match: A0A6J5UND5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKV-----RGLGKATRAATTVDPATENG--NDPLLHAF----TLPT 60
           MGNC+ + C   P +K+     +G  +  +A+T +   T        L+H       LP 
Sbjct: 13  MGNCLHVLC-HPPQEKIKVVIFKGGVREFKASTPIKEITSGPYIGYKLVHHIQPYTPLPP 72

Query: 61  KVSPQIGEVQNVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQC 120
               + GEV ++VP L  L   LV SKI + +    +K+KIVVT+EQ +LLL +A KF+ 
Sbjct: 73  NTKLEPGEVYHIVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRS 132

Query: 121 RQRL---LSYTGPRRGCKKWRPSLSVISEEQDF 140
            + +   LS      G  KWRPSL++I E   F
Sbjct: 133 PKEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 164

[Close]

BLAST of MS002891.1 vs. ExPASy TrEMBL
Match: A0A314YSB9 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_06292 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 1   MGNCIVLPCSQSPSKKV------RGLGKATRAATTVDPATENG--NDPLLH---AFT-LP 60
           MGNC+ + C   P +K+      RG+ +  +A+T ++  T        L+H    FT LP
Sbjct: 13  MGNCLHVLC-HPPQEKIKVVIFKRGV-REFKASTPIEEITSGPYIGYKLVHHVQPFTPLP 72

Query: 61  TKVSPQIGEVQNVVPCLKELENLLVSSKITYSDGGGARKVKIVVTKEQFKLLLANAKKFQ 120
                + GEV ++VP L  L   LV SKI + +    +K+KIVVT+EQ +LLL  A KF+
Sbjct: 73  PNTKLEPGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKTANKFR 132

Query: 121 CRQRL---LSYTGPRRGCKKWRPSLSVISEEQDF 140
             + +   LS      G  KWRPSL++I E   F
Sbjct: 133 SPKEIGVQLSGRSGLEGPPKWRPSLAIIPEVHSF 164

The following BLAST results are available for this feature:

BLAST of MS002891.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64995.1	1.6e-46	73.57	hypothetical protein Csa_022837 [Cucumis sativus]	[more]
XP_038877793.1	6.2e-43	72.39	uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida]	[more]
KAA0042344.1	3.0e-37	73.55	hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK1546...	[more]
KAG6583721.1	3.3e-36	75.00	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023542404.1	9.0e-34	61.59	uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS002891.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002891.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSY9	7.7e-47	73.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1	[more]
A0A5D3CW41	1.5e-37	73.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A314XUU1	9.8e-10	35.95	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_290...	[more]
A0A6J5UND5	1.3e-09	34.64	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 S...	[more]
A0A314YSB9	1.7e-09	36.36	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_062...	[more]

BLAST of MS002891.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 1..137
None	No IPR available	PANTHER	PTHR33148:SF50	SUBFAMILY NOT NAMED	coord: 1..137

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002891	MS002891	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002891.1-cds	MS002891.1-cds-scaffold359:497137..497553	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002891.1	MS002891.1-protein	polypeptide