MS001214.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001214.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	exosome complex exonuclease RRP46 homolog
Location	scaffold36: 2334341 .. 2337087 (+)
Sequence length	708
RNA-Seq Expression	MS001214.1
Synteny	MS001214.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTTCGTCCATCTTCCAGCATCTTTATATCGTTCTTGCTTCATTAGTGAGTTGGTTAAATTTTGGGAAATTTTCGATTTCGTAGGCGATACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTGGTAAGCTTCTTTAATATCATAACATTGTGAGTTCAGTAGATTTCTTACTTAATGGATTTCTTTATAGATGGTGTATTTCAGTTGAATCTGAAGTAGGTGATAATATTATTTGAATCTCTTTAATGTTTTTTTTTTTTTTTGACAAAATTCATGATGTATTAGGAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGGTGAGTCTAAATTTCCCCCCTTTTCTGTGCAAAATGCTTGTGATATGCAACATGGTTTCCTCTTCTCTGTTCCCGTCCTATTATCAATGTTTGTGATGCATATACACCCTAAACACTATGTCACTCGTTTCTGGCTGATTTTTAACGTCTATCTAATATACATCTAATAAGTATCACAAAATGTTGTTGTAGGTAAGCAGCCTCTGAATAGAAACCAAGACAAAATATGCACAACCTTAAATTTTAATGTATTATAGTTTTTCAGTTCTTATGTTTCTGAAAAGTATCTTCCTCTCCTCCCCTCTCTCTATATACATACCTCATAAATAAAAGTAATGTTATTACTCATGATAAGGACTTGGCAAGTTCCATTCATGAGGATTTTCTGCTTGATTACTCCTGACATGGATATGTACATAGTCATGGCACGTTACATCATTTTATTTTATATTTGGAAGTTAAAAGATAATTTATGTAAGAAATAATTAGCTGCAACATGTTATTATGTTACTGAAACCGTATGTTGCTGGAAAGTGCAAATATTCTTGAATTGCCCAGCTCACCTTGGTGCTAAATTGTACGTTGATGGAGATTTATTAAACTTTTGATAATTTCCTTATCTCAAAAAGGTTTTGGACTATCAGCTTTGAAATATATTGAATTAAAGGCGTTTACATTGCATTAGTTATGTGGCAACTAGTTTCTTATCTCAAATACATTGATGTTTCCCCCCCATAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTTTGATTTAATACCCTCTTTTTAATTACTAATAATAATGTTTGAAAAAGATAAGTTTATTAGGGCACATAATATTCATGTCATTTCCTCACGATCCTAATCAAGCTGAGTTTCTTATATAATGCTCTCCTTGAAAGTTGAATTTGAGTTCAAGTTCTCGTACTTTACTTTAACGGTGCTCTAACCAACTATGCTATATAATAGCTGGTTCAAATTTATATGATACGAGGAACTACTGTTGGGTCAGGAAGAGGTGAAGGATTTGGGCTTACTAATCAACTTGAACAGTTTTTTTTTTTTTTTTTTAATATTTTTTCCTAACATATTACATACATTAAATTAGGAATGGCTTTCTTTCAAAATGTCTAATGTCACTATGAAAAATATTTTTTACCTTAATTGGATTATGTTGGTATTATGTCAACTTATTACACACATGGGCATGATTTTCTTTATTTGTGGCAATATCTTTATTAAAATATCTTCATCAAGAACCTCTTTGACAGAGACCTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGGTAATCAACTTTGATGGTTTTATATTCTTCACGTCTTCATTTGATAAATGAATGGTTTGCACTGACTACTCTGCGCTGCATATTGCAGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGGTCAGCAATCTACTGTTTGTAATACTCCCTTCGGCAGTGCTTGTCCAATTGTGGAAATTATTGAATTTTATTTTCAAATGATAGAAAAGTGAATTGAAATTGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGGTATATCATATACAAAAACTAGCCATTTTCCAGTTATCGTAGTTTAAAACTTGCATGTCTATAGTGAGTTTTAATGTATTTTAGGATGTCAGTGTCTCAACAAGATCATACTCAATATTCACTCCTACATTATGTAATGTACTTTCGAATTCTGTGTTGTGCTCTGAGTGTTGTGTTTGAAAATGTATTTAGATCTCATTATAGCATTGAGTCTCCTTTTAGATTGCATATGGAAGCTGAAAATTTGTGAATGTTAGATGGAATAGTAAGAGTGGGATCTAAGCTTGTTGTTGTCTAATTTTGTTTAAAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC

mRNA sequence

ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGCGATACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTGGAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC

Coding sequence (CDS)

ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGCGATACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTGGAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC

Protein sequence

MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQLLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

Homology

[Close]

BLAST of MS001214.1 vs. NCBI nr
Match: XP_022131722.1 (exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131723.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131724.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 459.1 bits (1180), Expect = 2.2e-125
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 236
           KGSTQ+VDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS
Sbjct: 181 KGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 240

[Close]

BLAST of MS001214.1 vs. NCBI nr
Match: XP_022951618.1 (exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exosome complex exonuclease RRP46-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020307.1 Exosome complex exonuclease RRP46-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

[Close]

BLAST of MS001214.1 vs. NCBI nr
Match: XP_023538111.1 (exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.6 bits (1119), Expect = 2.6e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEMDRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

[Close]

BLAST of MS001214.1 vs. NCBI nr
Match: XP_023002484.1 (exosome complex exonuclease RRP46 homolog [Cucurbita maxima])

HSP 1 Score: 435.3 bits (1118), Expect = 3.5e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

[Close]

BLAST of MS001214.1 vs. NCBI nr
Match: XP_038885208.1 (exosome complex exonuclease RRP46 homolog [Benincasa hispida])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 222/243 (91.36%), Postives = 228/243 (93.83%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVVP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS Q+VDEPLEHGIITSVTQG+MSVDDYI CLERG AA+AKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSRQVVDEPLEHGIITSVTQGSMSVDDYILCLERGCAASAKMSAFLRRSLQPQLPTDSS 240

[Close]

BLAST of MS001214.1 vs. ExPASy Swiss-Prot
Match: Q9LX74 (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.3e-96
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

[Close]

BLAST of MS001214.1 vs. ExPASy Swiss-Prot
Match: Q84T68 (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RRP46 PE=1 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-78
Identity = 154/238 (64.71%), Postives = 181/238 (76.05%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNTTTS+I+Q       LLPCAI
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+F HLVFPNS  S   
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPAD 232
           K   Q  +E  E G+ITS+T G MS +DY  C+ERG AA++++SDF+R +LQ Q P D
Sbjct: 181 KEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGD 237

[Close]

BLAST of MS001214.1 vs. ExPASy Swiss-Prot
Match: Q9NQT4 (Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-29
Identity = 76/219 (34.70%), Postives = 119/219 (54.34%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ + T++P T+ ++++Q       LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEH 193
           ++ L   + C L   G ++LDPT  +E++ +A +                     + +E 
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFAL-----------------DSVER 207

Query: 194 GIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQ 226
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]

BLAST of MS001214.1 vs. ExPASy Swiss-Prot
Match: Q9CRA8 (Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.4e-28
Identity = 75/219 (34.25%), Postives = 118/219 (53.88%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ +  ++P T+ ++++Q       LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEH 193
           ++ L   + C L   G ++LDPT  +E++ +A +     ++                 E 
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA-----------------EQ 207

Query: 194 GIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQ 226
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]

BLAST of MS001214.1 vs. ExPASy Swiss-Prot
Match: Q4JB27 (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 57/185 (30.81%), Postives = 95/185 (51.35%), Query Frame = 0


Query: 5   RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 64
           R DGR  ++LRP+     VL  A GSA +  G+TKV+AAVYGPK    ++   P+KAS+ 
Sbjct: 16  RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75

Query: 65  VIW--------KPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQLLPC---- 124
           V +        + K     + E E   +++  L+S  +L + P T   I +++L      
Sbjct: 76  VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135

Query: 125 ---AINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSP 174
              A+ A+  AL DAGIP++ L   +    ++ G ++LD  + E+   +A       + P
Sbjct: 136 RLVALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNEQEDMWGEA-------DMP 192

[Close]

BLAST of MS001214.1 vs. ExPASy TrEMBL
Match: A0A6J1BU99 (exosome complex exonuclease RRP46 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004823 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.1e-125
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 236
           KGSTQ+VDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS
Sbjct: 181 KGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 240

[Close]

BLAST of MS001214.1 vs. ExPASy TrEMBL
Match: A0A6J1GI69 (exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC111454378 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.5e-119
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

[Close]

BLAST of MS001214.1 vs. ExPASy TrEMBL
Match: A0A6J1KQK5 (exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC111496308 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.7e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

[Close]

BLAST of MS001214.1 vs. ExPASy TrEMBL
Match: A0A0A0LLJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 7.0e-117
Identity = 219/243 (90.12%), Postives = 227/243 (93.42%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ V EPLEHGIITSVTQGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

[Close]

BLAST of MS001214.1 vs. ExPASy TrEMBL
Match: A0A5A7VGL5 (Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003630 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.5e-116
Identity = 218/243 (89.71%), Postives = 226/243 (93.00%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ V EPLEHG+ITSVTQGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQL  DSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

[Close]

BLAST of MS001214.1 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

[Close]

BLAST of MS001214.1 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

[Close]

BLAST of MS001214.1 vs. TAIR 10
Match: AT3G46210.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

[Close]

BLAST of MS001214.1 vs. TAIR 10
Match: AT3G46210.4 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

[Close]

BLAST of MS001214.1 vs. TAIR 10
Match: AT3G46210.5 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0


Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

The following BLAST results are available for this feature:

BLAST of MS001214.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131722.1	2.2e-125	96.69	exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_0...	[more]
XP_022951618.1	1.5e-118	91.36	exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exo...	[more]
XP_023538111.1	2.6e-118	91.36	exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_023002484.1	3.5e-118	91.36	exosome complex exonuclease RRP46 homolog [Cucurbita maxima]	[more]
XP_038885208.1	1.3e-117	91.36	exosome complex exonuclease RRP46 homolog [Benincasa hispida]	[more]

BLAST of MS001214.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX74	2.3e-96	72.02	Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP...	[more]
Q84T68	1.2e-78	64.71	Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9NQT4	5.3e-29	34.70	Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1	[more]
Q9CRA8	3.4e-28	34.25	Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1	[more]
Q4JB27	1.2e-12	30.81	Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 ...	[more]

BLAST of MS001214.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BU99	1.1e-125	96.69	exosome complex exonuclease RRP46 homolog isoform X1 OS=Momordica charantia OX=3...	[more]
A0A6J1GI69	7.5e-119	91.36	exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KQK5	1.7e-118	91.36	exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LLJ9	7.0e-117	90.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1	[more]
A0A5A7VGL5	3.5e-116	89.71	Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of MS001214.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46210.1	1.6e-97	72.02	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.2	1.6e-97	72.02	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.3	1.6e-97	72.02	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.4	1.6e-97	72.02	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.5	1.6e-97	72.02	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 13..126 e-value: 2.1E-16 score: 60.6
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..234 e-value: 1.8E-61 score: 209.6
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..226
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 1..226
None	No IPR available	CDD	cd11372	RNase_PH_RRP46	coord: 14..221 e-value: 7.64934E-77 score: 228.603
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 126..225
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 12..125

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001214	MS001214	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001214.1-cds	MS001214.1-cds-scaffold36:2334341..2334446	CDS
MS001214.1-cds	MS001214.1-cds-scaffold36:2334530..2334643	CDS
MS001214.1-cds	MS001214.1-cds-scaffold36:2334806..2334906	CDS
MS001214.1-cds	MS001214.1-cds-scaffold36:2336198..2336270	CDS
MS001214.1-cds	MS001214.1-cds-scaffold36:2336359..2336426	CDS
MS001214.1-cds	MS001214.1-cds-scaffold36:2336532..2336664	CDS
MS001214.1-cds	MS001214.1-cds-scaffold36:2336975..2337087	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001214.1	MS001214.1-protein	polypeptide