MS001214 (gene) Bitter gourd (TR) v1

Overview
NameMS001214
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexosome complex exonuclease RRP46 homolog
Locationscaffold36: 2334341 .. 2337087 (+)
RNA-Seq ExpressionMS001214
SyntenyMS001214
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTTCGTCCATCTTCCAGCATCTTTATATCGTTCTTGCTTCATTAGTGAGTTGGTTAAATTTTGGGAAATTTTCGATTTCGTAGGCGATACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTGGTAAGCTTCTTTAATATCATAACATTGTGAGTTCAGTAGATTTCTTACTTAATGGATTTCTTTATAGATGGTGTATTTCAGTTGAATCTGAAGTAGGTGATAATATTATTTGAATCTCTTTAATGTTTTTTTTTTTTTTTGACAAAATTCATGATGTATTAGGAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGGTGAGTCTAAATTTCCCCCCTTTTCTGTGCAAAATGCTTGTGATATGCAACATGGTTTCCTCTTCTCTGTTCCCGTCCTATTATCAATGTTTGTGATGCATATACACCCTAAACACTATGTCACTCGTTTCTGGCTGATTTTTAACGTCTATCTAATATACATCTAATAAGTATCACAAAATGTTGTTGTAGGTAAGCAGCCTCTGAATAGAAACCAAGACAAAATATGCACAACCTTAAATTTTAATGTATTATAGTTTTTCAGTTCTTATGTTTCTGAAAAGTATCTTCCTCTCCTCCCCTCTCTCTATATACATACCTCATAAATAAAAGTAATGTTATTACTCATGATAAGGACTTGGCAAGTTCCATTCATGAGGATTTTCTGCTTGATTACTCCTGACATGGATATGTACATAGTCATGGCACGTTACATCATTTTATTTTATATTTGGAAGTTAAAAGATAATTTATGTAAGAAATAATTAGCTGCAACATGTTATTATGTTACTGAAACCGTATGTTGCTGGAAAGTGCAAATATTCTTGAATTGCCCAGCTCACCTTGGTGCTAAATTGTACGTTGATGGAGATTTATTAAACTTTTGATAATTTCCTTATCTCAAAAAGGTTTTGGACTATCAGCTTTGAAATATATTGAATTAAAGGCGTTTACATTGCATTAGTTATGTGGCAACTAGTTTCTTATCTCAAATACATTGATGTTTCCCCCCCATAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTTTGATTTAATACCCTCTTTTTAATTACTAATAATAATGTTTGAAAAAGATAAGTTTATTAGGGCACATAATATTCATGTCATTTCCTCACGATCCTAATCAAGCTGAGTTTCTTATATAATGCTCTCCTTGAAAGTTGAATTTGAGTTCAAGTTCTCGTACTTTACTTTAACGGTGCTCTAACCAACTATGCTATATAATAGCTGGTTCAAATTTATATGATACGAGGAACTACTGTTGGGTCAGGAAGAGGTGAAGGATTTGGGCTTACTAATCAACTTGAACAGTTTTTTTTTTTTTTTTTTAATATTTTTTCCTAACATATTACATACATTAAATTAGGAATGGCTTTCTTTCAAAATGTCTAATGTCACTATGAAAAATATTTTTTACCTTAATTGGATTATGTTGGTATTATGTCAACTTATTACACACATGGGCATGATTTTCTTTATTTGTGGCAATATCTTTATTAAAATATCTTCATCAAGAACCTCTTTGACAGAGACCTCAAATAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGGTAATCAACTTTGATGGTTTTATATTCTTCACGTCTTCATTTGATAAATGAATGGTTTGCACTGACTACTCTGCGCTGCATATTGCAGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGGTCAGCAATCTACTGTTTGTAATACTCCCTTCGGCAGTGCTTGTCCAATTGTGGAAATTATTGAATTTTATTTTCAAATGATAGAAAAGTGAATTGAAATTGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGGTATATCATATACAAAAACTAGCCATTTTCCAGTTATCGTAGTTTAAAACTTGCATGTCTATAGTGAGTTTTAATGTATTTTAGGATGTCAGTGTCTCAACAAGATCATACTCAATATTCACTCCTACATTATGTAATGTACTTTCGAATTCTGTGTTGTGCTCTGAGTGTTGTGTTTGAAAATGTATTTAGATCTCATTATAGCATTGAGTCTCCTTTTAGATTGCATATGGAAGCTGAAAATTTGTGAATGTTAGATGGAATAGTAAGAGTGGGATCTAAGCTTGTTGTTGTCTAATTTTGTTTAAAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC

mRNA sequence

ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGCGATACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTGGAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC

Coding sequence (CDS)

ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGCGATACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTGGAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCATTAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTGAGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC

Protein sequence

MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQLLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
Homology
BLAST of MS001214 vs. NCBI nr
Match: XP_022131722.1 (exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131723.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_022131724.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 459.1 bits (1180), Expect = 2.2e-125
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 236
           KGSTQ+VDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS
Sbjct: 181 KGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 240

BLAST of MS001214 vs. NCBI nr
Match: XP_022951618.1 (exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exosome complex exonuclease RRP46-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020307.1 Exosome complex exonuclease RRP46-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

BLAST of MS001214 vs. NCBI nr
Match: XP_023538111.1 (exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.6 bits (1119), Expect = 2.6e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEMDRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

BLAST of MS001214 vs. NCBI nr
Match: XP_023002484.1 (exosome complex exonuclease RRP46 homolog [Cucurbita maxima])

HSP 1 Score: 435.3 bits (1118), Expect = 3.5e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

BLAST of MS001214 vs. NCBI nr
Match: XP_038885208.1 (exosome complex exonuclease RRP46 homolog [Benincasa hispida])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 222/243 (91.36%), Postives = 228/243 (93.83%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVVP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS Q+VDEPLEHGIITSVTQG+MSVDDYI CLERG AA+AKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSRQVVDEPLEHGIITSVTQGSMSVDDYILCLERGCAASAKMSAFLRRSLQPQLPTDSS 240

BLAST of MS001214 vs. ExPASy Swiss-Prot
Match: Q9LX74 (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.3e-96
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

BLAST of MS001214 vs. ExPASy Swiss-Prot
Match: Q84T68 (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RRP46 PE=1 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-78
Identity = 154/238 (64.71%), Postives = 181/238 (76.05%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNTTTS+I+Q       LLPCAI
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+F HLVFPNS  S   
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPAD 232
           K   Q  +E  E G+ITS+T G MS +DY  C+ERG AA++++SDF+R +LQ Q P D
Sbjct: 181 KEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGD 237

BLAST of MS001214 vs. ExPASy Swiss-Prot
Match: Q9NQT4 (Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-29
Identity = 76/219 (34.70%), Postives = 119/219 (54.34%), Query Frame = 0

Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ + T++P T+ ++++Q       LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEH 193
           ++ L   + C L   G ++LDPT  +E++ +A +                     + +E 
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFAL-----------------DSVER 207

Query: 194 GIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQ 226
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

BLAST of MS001214 vs. ExPASy Swiss-Prot
Match: Q9CRA8 (Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.4e-28
Identity = 75/219 (34.25%), Postives = 118/219 (53.88%), Query Frame = 0

Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ +  ++P T+ ++++Q       LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEH 193
           ++ L   + C L   G ++LDPT  +E++ +A +     ++                 E 
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA-----------------EQ 207

Query: 194 GIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQ 226
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

BLAST of MS001214 vs. ExPASy Swiss-Prot
Match: Q4JB27 (Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-12
Identity = 57/185 (30.81%), Postives = 95/185 (51.35%), Query Frame = 0

Query: 5   RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 64
           R DGR  ++LRP+     VL  A GSA +  G+TKV+AAVYGPK    ++   P+KAS+ 
Sbjct: 16  RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75

Query: 65  VIW--------KPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQLLPC---- 124
           V +        + K     + E E   +++  L+S  +L + P T   I +++L      
Sbjct: 76  VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135

Query: 125 ---AINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSP 174
              A+ A+  AL DAGIP++ L   +    ++ G ++LD  + E+   +A       + P
Sbjct: 136 RLVALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLNEQEDMWGEA-------DMP 192

BLAST of MS001214 vs. ExPASy TrEMBL
Match: A0A6J1BU99 (exosome complex exonuclease RRP46 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004823 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.1e-125
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 236
           KGSTQ+VDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS
Sbjct: 181 KGSTQVVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 240

BLAST of MS001214 vs. ExPASy TrEMBL
Match: A0A6J1GI69 (exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC111454378 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.5e-119
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

BLAST of MS001214 vs. ExPASy TrEMBL
Match: A0A6J1KQK5 (exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC111496308 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.7e-118
Identity = 222/243 (91.36%), Postives = 229/243 (94.24%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSI+VQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ+  EPLE+GIITS+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

BLAST of MS001214 vs. ExPASy TrEMBL
Match: A0A0A0LLJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 7.0e-117
Identity = 219/243 (90.12%), Postives = 227/243 (93.42%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ V EPLEHGIITSVTQGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQLP +SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

BLAST of MS001214 vs. ExPASy TrEMBL
Match: A0A5A7VGL5 (Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003630 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.5e-116
Identity = 218/243 (89.71%), Postives = 226/243 (93.00%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSIIVQ       LLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GSTQ V EPLEHG+ITSVTQGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQL  DSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

BLAST of MS001214 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

BLAST of MS001214 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

BLAST of MS001214 vs. TAIR 10
Match: AT3G46210.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

BLAST of MS001214 vs. TAIR 10
Match: AT3G46210.4 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

BLAST of MS001214 vs. TAIR 10
Match: AT3G46210.5 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 175/243 (72.02%), Postives = 206/243 (84.77%), Query Frame = 0

Query: 1   MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
           ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ-------LLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNTTTS+I+Q       LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP 180
           NA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 KGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSS 237
           +GS+    EP+EHGIITS+T G MSVDDY  C+E GRAATA +S F R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131722.12.2e-12596.69exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia] >XP_0... [more]
XP_022951618.11.5e-11891.36exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exo... [more]
XP_023538111.12.6e-11891.36exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo][more]
XP_023002484.13.5e-11891.36exosome complex exonuclease RRP46 homolog [Cucurbita maxima][more]
XP_038885208.11.3e-11791.36exosome complex exonuclease RRP46 homolog [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9LX742.3e-9672.02Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP... [more]
Q84T681.2e-7864.71Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=399... [more]
Q9NQT45.3e-2934.70Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1[more]
Q9CRA83.4e-2834.25Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1[more]
Q4JB271.2e-1230.81Exosome complex component Rrp41 OS=Sulfolobus acidocaldarius (strain ATCC 33909 ... [more]
Match NameE-valueIdentityDescription
A0A6J1BU991.1e-12596.69exosome complex exonuclease RRP46 homolog isoform X1 OS=Momordica charantia OX=3... [more]
A0A6J1GI697.5e-11991.36exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1KQK51.7e-11891.36exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A0A0LLJ97.0e-11790.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1[more]
A0A5A7VGL53.5e-11689.71Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
AT3G46210.11.6e-9772.02Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G46210.21.6e-9772.02Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G46210.31.6e-9772.02Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G46210.41.6e-9772.02Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G46210.51.6e-9772.02Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 13..126
e-value: 2.1E-16
score: 60.6
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..234
e-value: 1.8E-61
score: 209.6
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 1..226
NoneNo IPR availablePANTHERPTHR11953:SF1EXOSOME COMPLEX COMPONENT RRP46coord: 1..226
NoneNo IPR availableCDDcd11372RNase_PH_RRP46coord: 14..221
e-value: 7.64934E-77
score: 228.603
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 126..225
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 12..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001214.1MS001214.1mRNA