MS001184.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001184.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Epidermal patterning factor-like protein
Location	scaffold36: 2137816 .. 2138403 (-)
Sequence length	456
RNA-Seq Expression	MS001184.1
Synteny	MS001184.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGCCTTCAAAATTGGCACAGAAACAAACAACACCTTTCAATTTCCTTGCTCCTCCTCTCTGTTTCCATCTTTGTTGATGTCATATCCATGGCTGAAGGTAAGCCATTCAATTTCTTTTGTTTATTCTATTACATTACATCTCTCCCAGTTAAGGGTATAGGATTTGGAGAGGGAAAAACCAGTATAGATTGTTGACTCTCATCAGTTGCATGTTCTTGGAATGATGCAGGCAGAGGAATGCCAACTCCATTAATGGAGGGCAGGAAGGTGGAGGCAGCAGGCAGCTGGCCGGAGCTGCCGGAGAAAGTGGGGATGATGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGCGGCGGACATTGTGAGGCAATTCAAGTACCAGTGGCACTGCATGACTCACAACAGAATCAAAGGAAAAAAAGAAGCAGCCATTTCCCTGCTGCAGCGGCAACATCAGCAGGAGCTTCAAACAAGGATATGGCTCTCTCTAGTGAAGATGAGACCTCTAATTACAAACCCATAAGCTGGAAATGCAAGTGTGGGAACTTCATCTTCAACCCA

mRNA sequence

ATGGGCAGCCTTCAAAATTGGCACAGAAACAAACAACACCTTTCAATTTCCTTGCTCCTCCTCTCTGTTTCCATCTTTGTTGATGTCATATCCATGGCTGAAGGCAGAGGAATGCCAACTCCATTAATGGAGGGCAGGAAGGTGGAGGCAGCAGGCAGCTGGCCGGAGCTGCCGGAGAAAGTGGGGATGATGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGCGGCGGACATTGTGAGGCAATTCAAGTACCAGTGGCACTGCATGACTCACAACAGAATCAAAGGAAAAAAAGAAGCAGCCATTTCCCTGCTGCAGCGGCAACATCAGCAGGAGCTTCAAACAAGGATATGGCTCTCTCTAGTGAAGATGAGACCTCTAATTACAAACCCATAAGCTGGAAATGCAAGTGTGGGAACTTCATCTTCAACCCA

Coding sequence (CDS)

ATGGGCAGCCTTCAAAATTGGCACAGAAACAAACAACACCTTTCAATTTCCTTGCTCCTCCTCTCTGTTTCCATCTTTGTTGATGTCATATCCATGGCTGAAGGCAGAGGAATGCCAACTCCATTAATGGAGGGCAGGAAGGTGGAGGCAGCAGGCAGCTGGCCGGAGCTGCCGGAGAAAGTGGGGATGATGAGGAGTCAAATAGGGTCACGGCCGCCGAGCTGCCGGAGAAGGTGCAGGGAATGCGGCGGACATTGTGAGGCAATTCAAGTACCAGTGGCACTGCATGACTCACAACAGAATCAAAGGAAAAAAAGAAGCAGCCATTTCCCTGCTGCAGCGGCAACATCAGCAGGAGCTTCAAACAAGGATATGGCTCTCTCTAGTGAAGATGAGACCTCTAATTACAAACCCATAAGCTGGAAATGCAAGTGTGGGAACTTCATCTTCAACCCA

Protein sequence

MGSLQNWHRNKQHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPEKVGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP

Homology

[Close]

BLAST of MS001184.1 vs. NCBI nr
Match: XP_022131875.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1 EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia])

HSP 1 Score: 308.9 bits (790), Expect = 2.4e-80
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPEK 60
           MGSLQNWHRNKQH+SISLLLLSVSIFVDVISMAEGRG+PTPLMEGRKVEAAGSWPELPEK
Sbjct: 1   MGSLQNWHRNKQHISISLLLLSVSIFVDVISMAEGRGIPTPLMEGRKVEAAGSWPELPEK 60

Query: 61  VGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGA 120
           VGM+RSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGA
Sbjct: 61  VGMIRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGA 120

Query: 121 SNKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
           SNKDMALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SNKDMALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of MS001184.1 vs. NCBI nr
Match: XP_038886514.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida])

HSP 1 Score: 191.0 bits (484), Expect = 7.3e-45
Identity = 107/157 (68.15%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPEK 60
           MGS QNWHR K H+SISLL LSVSI + V S+ EGRG+   L  GR      +  E  EK
Sbjct: 1   MGSFQNWHRIK-HVSISLLFLSVSILIHVTSIVEGRGIQGSLTTGRSESPETAAAE--EK 60

Query: 61  VG-MMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHD-SQQNQRKK---RSSHFPAAAA 120
            G MMR+QIGSRPPSCRRRCRECGGHCEA+QVPVALHD S QNQRKK   RSSHF     
Sbjct: 61  AGMMMRNQIGSRPPSCRRRCRECGGHCEAVQVPVALHDLSHQNQRKKRTSRSSHFSV--- 120

Query: 121 TSAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
                S  D+ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 ----NSKHDVALSSEDETSNYKPISWKCKCGNFIFNP 147

[Close]

BLAST of MS001184.1 vs. NCBI nr
Match: XP_023538508.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 9.5e-45
Identity = 103/162 (63.58%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSIS-LLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPE 60
           MGSLQ WHRNK HLSI  L  LSV +F+ + SMAEGRG  TPLME RKVE     P   E
Sbjct: 1   MGSLQIWHRNK-HLSIPFLFFLSVFLFIHLTSMAEGRGFQTPLMEDRKVE---EQPSTAE 60

Query: 61  KVGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRS------SHFPAA 120
            V M RSQIGS+PPSCRRRCRECGG CEA+QVPVA+HDS   ++++R+      SHF + 
Sbjct: 61  LVRMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSTHQKQRRRTRRRRIRSHFSSE 120

Query: 121 AATSAGAS---NKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
           A++S+ +S   +  +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 ASSSSSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 158

[Close]

BLAST of MS001184.1 vs. NCBI nr
Match: XP_023002540.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 4.7e-44
Identity = 101/158 (63.92%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSIS-LLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPE 60
           MGSLQ WHRNK HLSI  L  LSV +F+ + S+AEGRG  TPLME RKVE     P   E
Sbjct: 1   MGSLQIWHRNK-HLSIPFLFFLSVFLFIHLTSIAEGRGFQTPLMEDRKVE---EQPSTAE 60

Query: 61  KVGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRS-----SHFPAAA 120
            V M RSQIGS+PPSCRRRCRECGG CEA+QVPVA+HDS   ++++R+     SHF + A
Sbjct: 61  LVRMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSSHEKQRRRTRRRIRSHFSSEA 120

Query: 121 ATSAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
           ++S  + +  +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSS--SKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of MS001184.1 vs. NCBI nr
Match: XP_022951797.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata])

HSP 1 Score: 186.0 bits (471), Expect = 2.3e-43
Identity = 102/159 (64.15%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSIS-LLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPE 60
           MGSLQ WHRNK HLSI  L  LSV +F+ + S+AEGRG  TPLME RKVE   S  EL  
Sbjct: 1   MGSLQIWHRNK-HLSIPFLFFLSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELVR 60

Query: 61  KVGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRS-----SHFPAAA 120
                RSQIGS+PPSCRRRCRECGG CEAIQVPVA+HDS   ++++R+     SHF + A
Sbjct: 61  M--RRRSQIGSQPPSCRRRCRECGGPCEAIQVPVAVHDSTHQKQRRRTRRRIRSHFSSEA 120

Query: 121 ATSAGAS-NKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
           ++S+ +S +  +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 156

[Close]

BLAST of MS001184.1 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-16
Identity = 57/147 (38.78%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 7   WHRNKQHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPEKVGMMRS 66
           W  N     + LL+L+ + F     MA GR  P        VE   S  +  +   MMR 
Sbjct: 3   WSSNMSSFLLILLILNSTHF---SLMANGRPEPD------SVEFTKSGDQ--DVKMMMRG 62

Query: 67  QIGSRPPSCRR-RCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGASNKDM 126
            IGSRPP C R RCR C GHCEAIQVP            +   H P   ++S+ +    +
Sbjct: 63  LIGSRPPRCERVRCRSC-GHCEAIQVPT---------NPQTKLHSPLTTSSSSSSETIHL 122

Query: 127 ALSSEDETSNYKPISWKCKCGNFIFNP 153
             +  D+++NYKP+SWKCKCGN I+NP
Sbjct: 123 DYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of MS001184.1 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.2e-07
Identity = 34/101 (33.66%), Postives = 48/101 (47.52%), Query Frame = 0


Query: 55  PELPEKVGMM--RSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPA 114
           P +  +V ++  ++++GS PPSC  RC  C   C AIQVP               S F  
Sbjct: 33  PPISPQVALIEDKARLGSTPPSCHNRCNNC-HPCMAIQVPTL----------PTRSRFTR 92

Query: 115 AAATSAGASNKDMALSSE-DETSNYKPISWKCKCGNFIFNP 153
               S G      +L++  D+ SNYKP+ WKC C    +NP
Sbjct: 93  VNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of MS001184.1 vs. ExPASy TrEMBL
Match: A0A6J1BQW9 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111004910 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPEK 60
           MGSLQNWHRNKQH+SISLLLLSVSIFVDVISMAEGRG+PTPLMEGRKVEAAGSWPELPEK
Sbjct: 1   MGSLQNWHRNKQHISISLLLLSVSIFVDVISMAEGRGIPTPLMEGRKVEAAGSWPELPEK 60

Query: 61  VGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGA 120
           VGM+RSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGA
Sbjct: 61  VGMIRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGA 120

Query: 121 SNKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
           SNKDMALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SNKDMALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of MS001184.1 vs. ExPASy TrEMBL
Match: A0A6J1KP85 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111496352 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.3e-44
Identity = 101/158 (63.92%), Postives = 119/158 (75.32%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSIS-LLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPE 60
           MGSLQ WHRNK HLSI  L  LSV +F+ + S+AEGRG  TPLME RKVE     P   E
Sbjct: 1   MGSLQIWHRNK-HLSIPFLFFLSVFLFIHLTSIAEGRGFQTPLMEDRKVE---EQPSTAE 60

Query: 61  KVGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRS-----SHFPAAA 120
            V M RSQIGS+PPSCRRRCRECGG CEA+QVPVA+HDS   ++++R+     SHF + A
Sbjct: 61  LVRMRRSQIGSQPPSCRRRCRECGGPCEAVQVPVAVHDSSHEKQRRRTRRRIRSHFSSEA 120

Query: 121 ATSAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
           ++S  + +  +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSS--SKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 152

[Close]

BLAST of MS001184.1 vs. ExPASy TrEMBL
Match: A0A6J1GIN2 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111454528 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 102/159 (64.15%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 1   MGSLQNWHRNKQHLSIS-LLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPE 60
           MGSLQ WHRNK HLSI  L  LSV +F+ + S+AEGRG  TPLME RKVE   S  EL  
Sbjct: 1   MGSLQIWHRNK-HLSIPFLFFLSVFLFIHLTSIAEGRGFQTPLMEDRKVEEQPSTAELVR 60

Query: 61  KVGMMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRS-----SHFPAAA 120
                RSQIGS+PPSCRRRCRECGG CEAIQVPVA+HDS   ++++R+     SHF + A
Sbjct: 61  M--RRRSQIGSQPPSCRRRCRECGGPCEAIQVPVAVHDSTHQKQRRRTRRRIRSHFSSEA 120

Query: 121 ATSAGAS-NKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
           ++S+ +S +  +ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 SSSSSSSKHNKVALSSEDETSNYKPISWKCKCGNFIFNP 156

[Close]

BLAST of MS001184.1 vs. ExPASy TrEMBL
Match: A0A0A0LPQ0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G372820 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 100/154 (64.94%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 1   MGSLQNWHRNK-QHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPE 60
           MGS Q WHRN+ +H+SI LL LSV I + V S+ EGRG+    MEG +  A  +  E  E
Sbjct: 1   MGSFQIWHRNRNKHISILLLFLSVFILILVTSI-EGRGIQA--MEGERKSAEVATEE-EE 60

Query: 61  KVG-MMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSA 120
           K+G MMR+QIGSRPPSCRR+CRECGGHCEA+QVPVALHDS QNQRK R     ++   S 
Sbjct: 61  KMGMMMRNQIGSRPPSCRRKCRECGGHCEAVQVPVALHDSNQNQRKGRRKRRSSSRYFSV 120

Query: 121 GASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
             S  D+ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 N-SKHDVALSSEDETSNYKPISWKCKCGNFIFNP 149

[Close]

BLAST of MS001184.1 vs. ExPASy TrEMBL
Match: A0A1S3BBM2 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103488159 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.3e-39
Identity = 98/157 (62.42%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 1   MGSLQNWHRNK-QHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEA---AGSWPE 60
           MGS Q WHRN+ +H+SI LL LSV I + V S+ EGRG+    MEG +  A   A +  E
Sbjct: 1   MGSFQIWHRNRNKHVSILLLFLSVFILILVTSI-EGRGIQA--MEGERKSAETVAVATEE 60

Query: 61  LPEKVG-MMRSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAA 120
             EK+G MMR+QIGSRPPSCRR+C ECGGHCEA+QVPVALHDS QNQ+K R     ++  
Sbjct: 61  EEEKMGMMMRNQIGSRPPSCRRKCMECGGHCEAVQVPVALHDSNQNQKKGRRRR-RSSRR 120

Query: 121 TSAGASNKDMALSSEDETSNYKPISWKCKCGNFIFNP 153
             +  S  D+ALSSEDETSNYKPISWKCKCGNFIFNP
Sbjct: 121 YFSDHSKHDVALSSEDETSNYKPISWKCKCGNFIFNP 153

[Close]

BLAST of MS001184.1 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-17
Identity = 57/147 (38.78%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 7   WHRNKQHLSISLLLLSVSIFVDVISMAEGRGMPTPLMEGRKVEAAGSWPELPEKVGMMRS 66
           W  N     + LL+L+ + F     MA GR  P        VE   S  +  +   MMR 
Sbjct: 3   WSSNMSSFLLILLILNSTHF---SLMANGRPEPD------SVEFTKSGDQ--DVKMMMRG 62

Query: 67  QIGSRPPSCRR-RCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPAAAATSAGASNKDM 126
            IGSRPP C R RCR C GHCEAIQVP            +   H P   ++S+ +    +
Sbjct: 63  LIGSRPPRCERVRCRSC-GHCEAIQVPT---------NPQTKLHSPLTTSSSSSSETIHL 122

Query: 127 ALSSEDETSNYKPISWKCKCGNFIFNP 153
             +  D+++NYKP+SWKCKCGN I+NP
Sbjct: 123 DYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of MS001184.1 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-08
Identity = 34/101 (33.66%), Postives = 48/101 (47.52%), Query Frame = 0


Query: 55  PELPEKVGMM--RSQIGSRPPSCRRRCRECGGHCEAIQVPVALHDSQQNQRKKRSSHFPA 114
           P +  +V ++  ++++GS PPSC  RC  C   C AIQVP               S F  
Sbjct: 33  PPISPQVALIEDKARLGSTPPSCHNRCNNC-HPCMAIQVPTL----------PTRSRFTR 92

Query: 115 AAATSAGASNKDMALSSE-DETSNYKPISWKCKCGNFIFNP 153
               S G      +L++  D+ SNYKP+ WKC C    +NP
Sbjct: 93  VNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

The following BLAST results are available for this feature:

BLAST of MS001184.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131875.1	2.4e-80	98.03	EPIDERMAL PATTERNING FACTOR-like protein 2 [Momordica charantia] >XP_022131876.1...	[more]
XP_038886514.1	7.3e-45	68.15	EPIDERMAL PATTERNING FACTOR-like protein 2 [Benincasa hispida]	[more]
XP_023538508.1	9.5e-45	63.58	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_023002540.1	4.7e-44	63.92	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita maxima]	[more]
XP_022951797.1	2.3e-43	64.15	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata]	[more]

BLAST of MS001184.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T068	5.7e-16	38.78	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	8.2e-07	33.66	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of MS001184.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQW9	1.2e-80	98.03	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1KP85	2.3e-44	63.92	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GIN2	1.1e-43	64.15	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LPQ0	1.8e-41	64.94	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G372...	[more]
A0A1S3BBM2	1.3e-39	62.42	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103488159...	[more]

BLAST of MS001184.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37810.1	4.0e-17	38.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G10310.1	5.8e-08	33.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 67..152 e-value: 3.9E-17 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..131
None	No IPR available	PANTHER	PTHR33109:SF54	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2	coord: 9..152
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 9..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001184	MS001184	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001184.1-cds	MS001184.1-cds-scaffold36:2137816..2138168	CDS
MS001184.1-cds	MS001184.1-cds-scaffold36:2138301..2138403	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001184.1	MS001184.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development