MS001130.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001130.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	conserved peptide upstream open reading frame 37
Location	scaffold36: 1652981 .. 1653273 (-)
Sequence length	159
RNA-Seq Expression	MS001130.1
Synteny	MS001130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTACCACCATAATCGTCAGAGTCATAGCATGCTTTCAACCTCTACAGGATTGTCAGGTTCGTAATTAATATCTTTAATGCTGTCTTTAGAATTGAGAAGAGTTTGAATGGGTATTATTAATATCCCCTTTTTTCTTCATGAAAAATACTTGACTGTAGCTGATTTCATGCCCATTATTGTACTTTTTCAGGCTGAGTATTTCCGTCACTTGCTGAAACCAGTCACG

mRNA sequence

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTACCACCATAATCGTCAGAGTCATAGCATGCTTTCAACCTCTACAGGATTGTCAGGCTGAGTATTTCCGTCACTTGCTGAAACCAGTCACG

Coding sequence (CDS)

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTACCACCATAATCGTCAGAGTCATAGCATGCTTTCAACCTCTACAGGATTGTCAGGCTGAGTATTTCCGTCACTTGCTGAAACCAGTCACG

Protein sequence

MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT

Homology

[Close]

BLAST of MS001130.1 vs. NCBI nr
Match: OAY67117.1 (hypothetical protein ACMD2_26596 [Ananas comosus])

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGS TIIVR+IACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGSATIIVRIIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of MS001130.1 vs. NCBI nr
Match: RWW15599.1 (hypothetical protein GW17_00020550 [Ensete ventricosum] >RWW77040.1 hypothetical protein BHE74_00014826 [Ensete ventricosum] >RZR91399.1 hypothetical protein BHM03_00019511 [Ensete ventricosum])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of MS001130.1 vs. NCBI nr
Match: KAG7029659.1 (hypothetical protein SDJN02_07999 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGS+TIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGSSTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of MS001130.1 vs. NCBI nr
Match: RRT83022.1 (hypothetical protein B296_00011968 [Ensete ventricosum])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of MS001130.1 vs. NCBI nr
Match: DAD40989.1 (TPA_asm: hypothetical protein HUJ06_015312 [Nelumbo nucifera])

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGS TIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of MS001130.1 vs. ExPASy TrEMBL
Match: A0A199UQL5 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_26596 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGS TIIVR+IACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGSATIIVRIIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of MS001130.1 vs. ExPASy TrEMBL
Match: M0RRS1 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of MS001130.1 vs. ExPASy TrEMBL
Match: A0A444EZ51 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020550 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of MS001130.1 vs. ExPASy TrEMBL
Match: A0A427B3H1 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011968 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

[Close]

BLAST of MS001130.1 vs. ExPASy TrEMBL
Match: A0A1S4DVM6 (uncharacterized protein LOC103488104 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488104 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFR LKHENGIAGS TIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRTLKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of MS001130.1 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 90.9 bits (224), Expect = 3.3e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQ+A QTRFR LKHE+GI G+  I+VRVIACFQPLQDCQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITGN--IVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of MS001130.1 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 )

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHE-NGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MV Q+A QTRFR  K+E NG +   TI+VRVIACFQP+ +CQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of MS001130.1 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-15
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQ+  +TRFR LK+E G A  +TI+VRVI C+QP+ +CQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

The following BLAST results are available for this feature:

BLAST of MS001130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY67117.1	3.3e-21	96.23	hypothetical protein ACMD2_26596 [Ananas comosus]	[more]
RWW15599.1	5.7e-21	96.23	hypothetical protein GW17_00020550 [Ensete ventricosum] >RWW77040.1 hypothetical...	[more]
KAG7029659.1	5.7e-21	96.23	hypothetical protein SDJN02_07999 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
RRT83022.1	5.7e-21	96.23	hypothetical protein B296_00011968 [Ensete ventricosum]	[more]
DAD40989.1	7.5e-21	96.23	TPA_asm: hypothetical protein HUJ06_015312 [Nelumbo nucifera]	[more]

BLAST of MS001130.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A199UQL5	1.6e-21	96.23	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_26596 PE=4 SV=1	[more]
M0RRS1	2.8e-21	96.23	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
A0A444EZ51	2.8e-21	96.23	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020550 PE=4 SV=1	[more]
A0A427B3H1	2.8e-21	96.23	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011968 PE=4 SV=1	[more]
A0A1S4DVM6	3.6e-21	96.23	uncharacterized protein LOC103488104 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MS001130.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50011.1	3.3e-19	81.13	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	1.0e-15	68.52	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	1.0e-15	66.04	conserved peptide upstream open reading frame 40	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281	BNAA02G34170D PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR35281:SF4	SUBFAMILY NOT NAMED	coord: 1..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001130	MS001130	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001130.1-cds	MS001130.1-cds-scaffold36:1652981..1653016	CDS
MS001130.1-cds	MS001130.1-cds-scaffold36:1653151..1653273	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001130.1	MS001130.1-protein	polypeptide