MS001130 (gene) Bitter gourd (TR) v1

Overview
NameMS001130
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionconserved peptide upstream open reading frame 37
Locationscaffold36: 1652981 .. 1653273 (-)
RNA-Seq ExpressionMS001130
SyntenyMS001130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTACCACCATAATCGTCAGAGTCATAGCATGCTTTCAACCTCTACAGGATTGTCAGGTTCGTAATTAATATCTTTAATGCTGTCTTTAGAATTGAGAAGAGTTTGAATGGGTATTATTAATATCCCCTTTTTTCTTCATGAAAAATACTTGACTGTAGCTGATTTCATGCCCATTATTGTACTTTTTCAGGCTGAGTATTTCCGTCACTTGCTGAAACCAGTCACG

mRNA sequence

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTACCACCATAATCGTCAGAGTCATAGCATGCTTTCAACCTCTACAGGATTGTCAGGCTGAGTATTTCCGTCACTTGCTGAAACCAGTCACG

Coding sequence (CDS)

ATGGTGTGCCAAGCAGCTACTCAAACAAGATTTCGAGCATTGAAACACGAAAATGGGATTGCTGGAAGTACCACCATAATCGTCAGAGTCATAGCATGCTTTCAACCTCTACAGGATTGTCAGGCTGAGTATTTCCGTCACTTGCTGAAACCAGTCACG

Protein sequence

MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT
Homology
BLAST of MS001130 vs. NCBI nr
Match: OAY67117.1 (hypothetical protein ACMD2_26596 [Ananas comosus])

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGS TIIVR+IACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGSATIIVRIIACFQPLQDCQAEYFRHLLKPVT 53

BLAST of MS001130 vs. NCBI nr
Match: RWW15599.1 (hypothetical protein GW17_00020550 [Ensete ventricosum] >RWW77040.1 hypothetical protein BHE74_00014826 [Ensete ventricosum] >RZR91399.1 hypothetical protein BHM03_00019511 [Ensete ventricosum])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

BLAST of MS001130 vs. NCBI nr
Match: KAG7029659.1 (hypothetical protein SDJN02_07999 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGS+TIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGSSTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

BLAST of MS001130 vs. NCBI nr
Match: RRT83022.1 (hypothetical protein B296_00011968 [Ensete ventricosum])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

BLAST of MS001130 vs. NCBI nr
Match: DAD40989.1 (TPA_asm: hypothetical protein HUJ06_015312 [Nelumbo nucifera])

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGS TIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

BLAST of MS001130 vs. ExPASy TrEMBL
Match: A0A199UQL5 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_26596 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGS TIIVR+IACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGSATIIVRIIACFQPLQDCQAEYFRHLLKPVT 53

BLAST of MS001130 vs. ExPASy TrEMBL
Match: M0RRS1 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

BLAST of MS001130 vs. ExPASy TrEMBL
Match: A0A444EZ51 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020550 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

BLAST of MS001130 vs. ExPASy TrEMBL
Match: A0A427B3H1 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011968 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
           MVCQAAT+TRFRALKHENGIAGSTTIIVRVIACF+PLQDCQAEYFRHLLKPVT
Sbjct: 56  MVCQAATRTRFRALKHENGIAGSTTIIVRVIACFRPLQDCQAEYFRHLLKPVT 108

BLAST of MS001130 vs. ExPASy TrEMBL
Match: A0A1S4DVM6 (uncharacterized protein LOC103488104 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488104 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.6e-21
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQAATQTRFR LKHENGIAGS TIIVRVIACFQPLQDCQAEYFRHLLKPVT
Sbjct: 1  MVCQAATQTRFRTLKHENGIAGSATIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

BLAST of MS001130 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 90.9 bits (224), Expect = 3.3e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQ+A QTRFR LKHE+GI G+  I+VRVIACFQPLQDCQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITGN--IVVRVIACFQPLQDCQAEYFRQLLKPVT 51

BLAST of MS001130 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 )

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-15
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHE-NGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MV Q+A QTRFR  K+E NG +   TI+VRVIACFQP+ +CQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

BLAST of MS001130 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-15
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 1  MVCQAATQTRFRALKHENGIAGSTTIIVRVIACFQPLQDCQAEYFRHLLKPVT 54
          MVCQ+  +TRFR LK+E G A  +TI+VRVI C+QP+ +CQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OAY67117.13.3e-2196.23hypothetical protein ACMD2_26596 [Ananas comosus][more]
RWW15599.15.7e-2196.23hypothetical protein GW17_00020550 [Ensete ventricosum] >RWW77040.1 hypothetical... [more]
KAG7029659.15.7e-2196.23hypothetical protein SDJN02_07999 [Cucurbita argyrosperma subsp. argyrosperma][more]
RRT83022.15.7e-2196.23hypothetical protein B296_00011968 [Ensete ventricosum][more]
DAD40989.17.5e-2196.23TPA_asm: hypothetical protein HUJ06_015312 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A199UQL51.6e-2196.23Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_26596 PE=4 SV=1[more]
M0RRS12.8e-2196.23Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
A0A444EZ512.8e-2196.23Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00020550 PE=4 SV=1[more]
A0A427B3H12.8e-2196.23Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011968 PE=4 SV=1[more]
A0A1S4DVM63.6e-2196.23uncharacterized protein LOC103488104 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT5G50011.13.3e-1981.13conserved peptide upstream open reading frame 37 [more]
AT5G09461.11.0e-1568.52conserved peptide upstream open reading frame 43 [more]
AT5G64341.11.0e-1566.04conserved peptide upstream open reading frame 40 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35281BNAA02G34170D PROTEINcoord: 1..53
NoneNo IPR availablePANTHERPTHR35281:SF4SUBFAMILY NOT NAMEDcoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001130.1MS001130.1mRNA