MELO3C035642.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C035642.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr12: 16254743 .. 16255593 (+)
Sequence length	772
RNA-Seq Expression	MELO3C035642.jh1.t1
Synteny	MELO3C035642.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTATGTATGTATGCATAAGAAATTAATGAAACTAATATGTTTGTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGGTGGATGGAGGTCCGACAACGGGACGTTTCGACCCAGGTACCTAAATTAACTAGCGAGAATGATGGCCTTCAAGATCCCAGGTTCTAACGCCCATGCTTCAACGATCGATAGTCGAATAAAATTGTTAAAGAGAATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACCTGCAGTGGATTTGGGTGGAATGATGCACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACAATTGGGTCAAGGTGTGTTACTAGTCATTTGTGTGATTAATGTAGTATATTTCAAAAACTGGACTAACAATTTATTATTGCACTTATATAGAGTCATCCGGCGGCGAAGGGCCTCCTTACTAAGTTGTTTCTCCACTATGACGAACTGTCGTATGTGTTTGGCAAAGATCGTGCAACGAGAGGCTGGGCCGAGAGTTTTGCAGACGTTGGGTCAAACAATTCTGCTGGGTACGAGCCATTTATCGCTAATGCTACGCCGGATACGGATTTCCAGCCTATGTACAGTCAAGAATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGGAAACGTGGAGGACAGGCCGCAGACAGTGGGGACGTACTTCGCACTGCGATTGAGTATGGAAATGAACAACTGAACCGCATTGCTGAATGA

mRNA sequence

ATGTATTATGTATGTATGCATAAGAAATTAATGAAACTAATATGTTTGTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGGTGGATGGAGGTCCGACAACGGGACGTTTCGACCCAGGTACCTAAATTAACTAGCGAGAATGATGGCCTTCAAGATCCCAGGTTCTAACGCCCATGCTTCAACGATCGATAGTCGAATAAAATTGTTAAAGAGAATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACCTGCAGTGGATTTGGGTGGAATGATGCACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACAATTGGGTCAAGAGTCATCCGGCGGCGAAGGGCCTCCTTACTAAGTTGTTTCTCCACTATGACGAACTGTCGTATGTGTTTGGCAAAGATCGTGCAACGAGAGGCTGGGCCGAGAGTTTTGCAGACGTTGGGTCAAACAATTCTGCTGGGTACGAGCCATTTATCGCTAATGCTACGCCGGATACGGATTTCCAGCCTATGTACAGTCAAGAATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGGAAACGTGGAGGACAGGCCGCAGACAGTGGGGACGTACTTCGCACTGCGATTGAGTATGGAAATGAACAACTGAACCGCATTGCTGAATGA

Coding sequence (CDS)

ATGATGGCCTTCAAGATCCCAGGTTCTAACGCCCATGCTTCAACGATCGATAGTCGAATAAAATTGTTAAAGAGAATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACCTGCAGTGGATTTGGGTGGAATGATGCACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACAATTGGGTCAAGAGTCATCCGGCGGCGAAGGGCCTCCTTACTAAGTTGTTTCTCCACTATGACGAACTGTCGTATGTGTTTGGCAAAGATCGTGCAACGAGAGGCTGGGCCGAGAGTTTTGCAGACGTTGGGTCAAACAATTCTGCTGGGTACGAGCCATTTATCGCTAATGCTACGCCGGATACGGATTTCCAGCCTATGTACAGTCAAGAATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGGAAACGTGGAGGACAGGCCGCAGACAGTGGGGACGTACTTCGCACTGCGATTGAGTATGGAAATGAACAACTGAACCGCATTGCTGAATGA

Protein sequence

MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNWVKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDTDFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQLNRIAE

Homology

[Close]

BLAST of MELO3C035642.jh1.t1 vs. NCBI nr
Match: KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 330 bits (847), Expect = 4.02e-112
Identity = 164/186 (88.17%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPGSN HASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWND QKCIVAEKEVFDNW
Sbjct: 51  MMAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSH AAKGLLTKLFLHYDELSYVFGKDRAT GWAESFADVGSNN AGYEPFIANATPDT
Sbjct: 111 VKSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAAD+    R  +     Q
Sbjct: 171 NFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVV---RQ 230

Query: 181 LNRIAE 186
           L  I E
Sbjct: 231 LEAIPE 233

[Close]

BLAST of MELO3C035642.jh1.t1 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (825), Expect = 8.35e-109
Identity = 157/186 (84.41%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIP SN HASTIDSRIKLLKRMFHAI EMRGPTCSGFGWND QKCIVAEKEVFD+W
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDW 81

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           V+SHPAAKGLL K F HYDELSYVF KD AT G AESFADVGSN+  GY+ F ANA  DT
Sbjct: 82  VRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDT 141

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYS+ LNMSPDELMGTR ARVSEGRYVSSGSK+KRGG   DSGD+LRTAIEYGNEQ
Sbjct: 142 DFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQ 201

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 202 LNRIAE 207

[Close]

BLAST of MELO3C035642.jh1.t1 vs. NCBI nr
Match: KAA0060558.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 312 bits (800), Expect = 1.09e-102
Identity = 153/186 (82.26%), Postives = 160/186 (86.02%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MM FKIPGSN HA TIDSRIKLLKRMFHAIAEM G TCSGF WND QKCIVAEKEVFD+W
Sbjct: 254 MMTFKIPGSNIHALTIDSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDW 313

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VK+HP AKGLL K F HY++LSYVFGKDRA RGW ESF DV SN+  GYE F  +A PDT
Sbjct: 314 VKNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDT 373

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQ MYSQ LNMSPDELMGTR ARVSEGRYVSSGSKRKRGGQA DSGDVLRT IEYGNEQ
Sbjct: 374 NFQLMYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQ 433

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 434 LNRIAE 439

[Close]

BLAST of MELO3C035642.jh1.t1 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 304 bits (778), Expect = 1.26e-101
Identity = 147/186 (79.03%), Postives = 161/186 (86.56%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKL+KRMFHA+AEMRGP CSGFGWND +KCIV EKE+FD+W
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPAAKGLL K F+HYDELSYVFGKDRAT G AESFAD+GSN+  GY+   A+A PDT
Sbjct: 111 VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DF PMYS  LNMSPD+LM TR ARVSE R VSSGSKRKR G A DSGD++RTAIEYGNEQ
Sbjct: 171 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 230

Query: 181 LNRIAE 186
           L+RIAE
Sbjct: 231 LHRIAE 236

[Close]

BLAST of MELO3C035642.jh1.t1 vs. NCBI nr
Match: KAA0052248.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (771), Expect = 3.28e-101
Identity = 146/186 (78.49%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKLLKRMFH +AEMRGPTCSGF WND QKCIV EK+ F++W
Sbjct: 47  MMAFKIPGCNVHASTIDSRIKLLKRMFHTLAEMRGPTCSGFRWNDEQKCIVIEKKEFNDW 106

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPA KGLLTKLF HYDELSYVFGKDRA     E+FAD+G N+ A YE F ANA  D 
Sbjct: 107 VKSHPATKGLLTKLFPHYDELSYVFGKDRAMGAQVETFADIGLNDPARYEAFAANAALDM 166

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYSQ LNMSPDELMGTR  RVS+ RYVSSGSKRKR GQA+DSG+V+RTAIE+GNEQ
Sbjct: 167 DFQPMYSQGLNMSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQ 226

Query: 181 LNRIAE 186
           LNRIA+
Sbjct: 227 LNRIAD 232

[Close]

BLAST of MELO3C035642.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)

HSP 1 Score: 330 bits (847), Expect = 1.94e-112
Identity = 164/186 (88.17%), Postives = 167/186 (89.78%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPGSN HASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWND QKCIVAEKEVFDNW
Sbjct: 51  MMAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSH AAKGLLTKLFLHYDELSYVFGKDRAT GWAESFADVGSNN AGYEPFIANATPDT
Sbjct: 111 VKSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAAD+    R  +     Q
Sbjct: 171 NFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVV---RQ 230

Query: 181 LNRIAE 186
           L  I E
Sbjct: 231 LEAIPE 233

[Close]

BLAST of MELO3C035642.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 4.04e-109
Identity = 157/186 (84.41%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIP SN HASTIDSRIKLLKRMFHAI EMRGPTCSGFGWND QKCIVAEKEVFD+W
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDW 81

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           V+SHPAAKGLL K F HYDELSYVF KD AT G AESFADVGSN+  GY+ F ANA  DT
Sbjct: 82  VRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDT 141

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYS+ LNMSPDELMGTR ARVSEGRYVSSGSK+KRGG   DSGD+LRTAIEYGNEQ
Sbjct: 142 DFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQ 201

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 202 LNRIAE 207

[Close]

BLAST of MELO3C035642.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 312 bits (800), Expect = 5.27e-103
Identity = 153/186 (82.26%), Postives = 160/186 (86.02%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MM FKIPGSN HA TIDSRIKLLKRMFHAIAEM G TCSGF WND QKCIVAEKEVFD+W
Sbjct: 254 MMTFKIPGSNIHALTIDSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDW 313

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VK+HP AKGLL K F HY++LSYVFGKDRA RGW ESF DV SN+  GYE F  +A PDT
Sbjct: 314 VKNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDT 373

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQ MYSQ LNMSPDELMGTR ARVSEGRYVSSGSKRKRGGQA DSGDVLRT IEYGNEQ
Sbjct: 374 NFQLMYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQ 433

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 434 LNRIAE 439

[Close]

BLAST of MELO3C035642.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 304 bits (778), Expect = 6.10e-102
Identity = 147/186 (79.03%), Postives = 161/186 (86.56%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKL+KRMFHA+AEMRGP CSGFGWND +KCIV EKE+FD+W
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPAAKGLL K F+HYDELSYVFGKDRAT G AESFAD+GSN+  GY+   A+A PDT
Sbjct: 111 VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DF PMYS  LNMSPD+LM TR ARVSE R VSSGSKRKR G A DSGD++RTAIEYGNEQ
Sbjct: 171 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 230

Query: 181 LNRIAE 186
           L+RIAE
Sbjct: 231 LHRIAE 236

[Close]

BLAST of MELO3C035642.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BSM9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00470 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 1.59e-101
Identity = 146/186 (78.49%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKLLKRMFH +AEMRGPTCSGF WND QKCIV EK+ F++W
Sbjct: 47  MMAFKIPGCNVHASTIDSRIKLLKRMFHTLAEMRGPTCSGFRWNDEQKCIVIEKKEFNDW 106

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPA KGLLTKLF HYDELSYVFGKDRA     E+FAD+G N+ A YE F ANA  D 
Sbjct: 107 VKSHPATKGLLTKLFPHYDELSYVFGKDRAMGAQVETFADIGLNDPARYEAFAANAALDM 166

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYSQ LNMSPDELMGTR  RVS+ RYVSSGSKRKR GQA+DSG+V+RTAIE+GNEQ
Sbjct: 167 DFQPMYSQGLNMSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQ 226

Query: 181 LNRIAE 186
           LNRIA+
Sbjct: 227 LNRIAD 232

[Close]

BLAST of MELO3C035642.jh1.t1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 21/85 (24.71%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 16  IDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNWVKSHPAAKGLLTKLF 75
           + +R K L+ +F ++  +      GF W+D ++ +VA+  V+D ++K HP ++    K  
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 76  LHYDELSYVFGKDRATRGWAESFAD 101
             Y +L  V+    +     ES ++
Sbjct: 126 PCYKDLCLVYSDGMSEHKAEESISE 148

[Close]

BLAST of MELO3C035642.jh1.t1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 21/85 (24.71%), Postives = 43/85 (50.59%), Query Frame = 0


Query: 16  IDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNWVKSHPAAKGLLTKLF 75
           + +R K L+ +F ++  +      GF W+D ++ +VA+  V+D ++K HP ++    K  
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 76  LHYDELSYVFGKDRATRGWAESFAD 101
             Y +L  V+    +     ES ++
Sbjct: 126 PCYKDLCLVYSDGMSEHKAEESISE 148

The following BLAST results are available for this feature:

BLAST of MELO3C035642.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054347.1	4.02e-112	88.17	retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p...	[more]
KAA0048374.1	8.35e-109	84.41	retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p...	[more]
KAA0060558.1	1.09e-102	82.26	retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon p...	[more]
TYK05082.1	1.26e-101	79.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0052248.1	3.28e-101	78.49	retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon p...	[more]

BLAST of MELO3C035642.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C035642.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIE9	1.94e-112	88.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZA5	4.04e-109	84.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BRF0	5.27e-103	82.26	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C1M0	6.10e-102	79.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BSM9	1.59e-101	78.49	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C035642.jh1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	2.1e-04	24.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.1e-04	24.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 1..157
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035642.jh1	MELO3C035642.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035642.jh1.t1.exon	MELO3C035642.jh1.t1.exon	exon
MELO3C035642.jh1.t1.exon	MELO3C035642.jh1.t1.exon_2	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035642.jh1.t1.start_codon	MELO3C035642.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035642.jh1.t1.cds	MELO3C035642.jh1.t1.cds	CDS
MELO3C035642.jh1.t1.cds	MELO3C035642.jh1.t1.cds_2	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035642.jh1.t1.stop_codon	MELO3C035642.jh1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035642.jh1.t1	MELO3C035642.jh1.t1-protein	polypeptide