MELO3C035642.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035642.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr12: 16254743 .. 16255593 (+)
RNA-Seq ExpressionMELO3C035642.jh1
SyntenyMELO3C035642.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTATGTATGTATGCATAAGAAATTAATGAAACTAATATGTTTGTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGGTGGATGGAGGTCCGACAACGGGACGTTTCGACCCAGGTACCTAAATTAACTAGCGAGAATGATGGCCTTCAAGATCCCAGGTTCTAACGCCCATGCTTCAACGATCGATAGTCGAATAAAATTGTTAAAGAGAATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACCTGCAGTGGATTTGGGTGGAATGATGCACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACAATTGGGTCAAGGTGTGTTACTAGTCATTTGTGTGATTAATGTAGTATATTTCAAAAACTGGACTAACAATTTATTATTGCACTTATATAGAGTCATCCGGCGGCGAAGGGCCTCCTTACTAAGTTGTTTCTCCACTATGACGAACTGTCGTATGTGTTTGGCAAAGATCGTGCAACGAGAGGCTGGGCCGAGAGTTTTGCAGACGTTGGGTCAAACAATTCTGCTGGGTACGAGCCATTTATCGCTAATGCTACGCCGGATACGGATTTCCAGCCTATGTACAGTCAAGAATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGGAAACGTGGAGGACAGGCCGCAGACAGTGGGGACGTACTTCGCACTGCGATTGAGTATGGAAATGAACAACTGAACCGCATTGCTGAATGA

mRNA sequence

ATGTATTATGTATGTATGCATAAGAAATTAATGAAACTAATATGTTTGTTTCATTTCTAGCATGGCAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGGTGGATGGAGGTCCGACAACGGGACGTTTCGACCCAGGTACCTAAATTAACTAGCGAGAATGATGGCCTTCAAGATCCCAGGTTCTAACGCCCATGCTTCAACGATCGATAGTCGAATAAAATTGTTAAAGAGAATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACCTGCAGTGGATTTGGGTGGAATGATGCACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACAATTGGGTCAAGAGTCATCCGGCGGCGAAGGGCCTCCTTACTAAGTTGTTTCTCCACTATGACGAACTGTCGTATGTGTTTGGCAAAGATCGTGCAACGAGAGGCTGGGCCGAGAGTTTTGCAGACGTTGGGTCAAACAATTCTGCTGGGTACGAGCCATTTATCGCTAATGCTACGCCGGATACGGATTTCCAGCCTATGTACAGTCAAGAATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGGAAACGTGGAGGACAGGCCGCAGACAGTGGGGACGTACTTCGCACTGCGATTGAGTATGGAAATGAACAACTGAACCGCATTGCTGAATGA

Coding sequence (CDS)

ATGATGGCCTTCAAGATCCCAGGTTCTAACGCCCATGCTTCAACGATCGATAGTCGAATAAAATTGTTAAAGAGAATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACCTGCAGTGGATTTGGGTGGAATGATGCACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGACAATTGGGTCAAGAGTCATCCGGCGGCGAAGGGCCTCCTTACTAAGTTGTTTCTCCACTATGACGAACTGTCGTATGTGTTTGGCAAAGATCGTGCAACGAGAGGCTGGGCCGAGAGTTTTGCAGACGTTGGGTCAAACAATTCTGCTGGGTACGAGCCATTTATCGCTAATGCTACGCCGGATACGGATTTCCAGCCTATGTACAGTCAAGAATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGTGGGTCTAAGCGGAAACGTGGAGGACAGGCCGCAGACAGTGGGGACGTACTTCGCACTGCGATTGAGTATGGAAATGAACAACTGAACCGCATTGCTGAATGA

Protein sequence

MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNWVKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDTDFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQLNRIAE
Homology
[Close]
BLAST of MELO3C035642.jh1 vs. NCBI nr
Match: KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 330 bits (847), Expect = 4.02e-112
Identity = 164/186 (88.17%), Postives = 167/186 (89.78%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPGSN HASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWND QKCIVAEKEVFDNW
Sbjct: 51  MMAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSH AAKGLLTKLFLHYDELSYVFGKDRAT GWAESFADVGSNN AGYEPFIANATPDT
Sbjct: 111 VKSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAAD+    R  +     Q
Sbjct: 171 NFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVV---RQ 230

Query: 181 LNRIAE 186
           L  I E
Sbjct: 231 LEAIPE 233

[Close]
BLAST of MELO3C035642.jh1 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (825), Expect = 8.35e-109
Identity = 157/186 (84.41%), Postives = 164/186 (88.17%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIP SN HASTIDSRIKLLKRMFHAI EMRGPTCSGFGWND QKCIVAEKEVFD+W
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDW 81

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           V+SHPAAKGLL K F HYDELSYVF KD AT G AESFADVGSN+  GY+ F ANA  DT
Sbjct: 82  VRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDT 141

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYS+ LNMSPDELMGTR ARVSEGRYVSSGSK+KRGG   DSGD+LRTAIEYGNEQ
Sbjct: 142 DFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQ 201

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 202 LNRIAE 207

[Close]
BLAST of MELO3C035642.jh1 vs. NCBI nr
Match: KAA0060558.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 312 bits (800), Expect = 1.09e-102
Identity = 153/186 (82.26%), Postives = 160/186 (86.02%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MM FKIPGSN HA TIDSRIKLLKRMFHAIAEM G TCSGF WND QKCIVAEKEVFD+W
Sbjct: 254 MMTFKIPGSNIHALTIDSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDW 313

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VK+HP AKGLL K F HY++LSYVFGKDRA RGW ESF DV SN+  GYE F  +A PDT
Sbjct: 314 VKNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDT 373

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQ MYSQ LNMSPDELMGTR ARVSEGRYVSSGSKRKRGGQA DSGDVLRT IEYGNEQ
Sbjct: 374 NFQLMYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQ 433

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 434 LNRIAE 439

[Close]
BLAST of MELO3C035642.jh1 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 304 bits (778), Expect = 1.26e-101
Identity = 147/186 (79.03%), Postives = 161/186 (86.56%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKL+KRMFHA+AEMRGP CSGFGWND +KCIV EKE+FD+W
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPAAKGLL K F+HYDELSYVFGKDRAT G AESFAD+GSN+  GY+   A+A PDT
Sbjct: 111 VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DF PMYS  LNMSPD+LM TR ARVSE R VSSGSKRKR G A DSGD++RTAIEYGNEQ
Sbjct: 171 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 230

Query: 181 LNRIAE 186
           L+RIAE
Sbjct: 231 LHRIAE 236

[Close]
BLAST of MELO3C035642.jh1 vs. NCBI nr
Match: KAA0052248.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (771), Expect = 3.28e-101
Identity = 146/186 (78.49%), Postives = 159/186 (85.48%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKLLKRMFH +AEMRGPTCSGF WND QKCIV EK+ F++W
Sbjct: 47  MMAFKIPGCNVHASTIDSRIKLLKRMFHTLAEMRGPTCSGFRWNDEQKCIVIEKKEFNDW 106

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPA KGLLTKLF HYDELSYVFGKDRA     E+FAD+G N+ A YE F ANA  D 
Sbjct: 107 VKSHPATKGLLTKLFPHYDELSYVFGKDRAMGAQVETFADIGLNDPARYEAFAANAALDM 166

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYSQ LNMSPDELMGTR  RVS+ RYVSSGSKRKR GQA+DSG+V+RTAIE+GNEQ
Sbjct: 167 DFQPMYSQGLNMSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQ 226

Query: 181 LNRIAE 186
           LNRIA+
Sbjct: 227 LNRIAD 232

[Close]
BLAST of MELO3C035642.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)

HSP 1 Score: 330 bits (847), Expect = 1.94e-112
Identity = 164/186 (88.17%), Postives = 167/186 (89.78%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPGSN HASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWND QKCIVAEKEVFDNW
Sbjct: 51  MMAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSH AAKGLLTKLFLHYDELSYVFGKDRAT GWAESFADVGSNN AGYEPFIANATPDT
Sbjct: 111 VKSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAAD+    R  +     Q
Sbjct: 171 NFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVV---RQ 230

Query: 181 LNRIAE 186
           L  I E
Sbjct: 231 LEAIPE 233

[Close]
BLAST of MELO3C035642.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 4.04e-109
Identity = 157/186 (84.41%), Postives = 164/186 (88.17%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIP SN HASTIDSRIKLLKRMFHAI EMRGPTCSGFGWND QKCIVAEKEVFD+W
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDW 81

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           V+SHPAAKGLL K F HYDELSYVF KD AT G AESFADVGSN+  GY+ F ANA  DT
Sbjct: 82  VRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDT 141

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYS+ LNMSPDELMGTR ARVSEGRYVSSGSK+KRGG   DSGD+LRTAIEYGNEQ
Sbjct: 142 DFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQ 201

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 202 LNRIAE 207

[Close]
BLAST of MELO3C035642.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 312 bits (800), Expect = 5.27e-103
Identity = 153/186 (82.26%), Postives = 160/186 (86.02%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MM FKIPGSN HA TIDSRIKLLKRMFHAIAEM G TCSGF WND QKCIVAEKEVFD+W
Sbjct: 254 MMTFKIPGSNIHALTIDSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDW 313

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VK+HP AKGLL K F HY++LSYVFGKDRA RGW ESF DV SN+  GYE F  +A PDT
Sbjct: 314 VKNHPTAKGLLNKSFSHYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDT 373

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           +FQ MYSQ LNMSPDELMGTR ARVSEGRYVSSGSKRKRGGQA DSGDVLRT IEYGNEQ
Sbjct: 374 NFQLMYSQGLNMSPDELMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQ 433

Query: 181 LNRIAE 186
           LNRIAE
Sbjct: 434 LNRIAE 439

[Close]
BLAST of MELO3C035642.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 304 bits (778), Expect = 6.10e-102
Identity = 147/186 (79.03%), Postives = 161/186 (86.56%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKL+KRMFHA+AEMRGP CSGFGWND +KCIV EKE+FD+W
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDW 110

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPAAKGLL K F+HYDELSYVFGKDRAT G AESFAD+GSN+  GY+   A+A PDT
Sbjct: 111 VKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDT 170

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DF PMYS  LNMSPD+LM TR ARVSE R VSSGSKRKR G A DSGD++RTAIEYGNEQ
Sbjct: 171 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 230

Query: 181 LNRIAE 186
           L+RIAE
Sbjct: 231 LHRIAE 236

[Close]
BLAST of MELO3C035642.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BSM9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00470 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 1.59e-101
Identity = 146/186 (78.49%), Postives = 159/186 (85.48%), Query Frame = 0 

Query: 1   MMAFKIPGSNAHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNW 60
           MMAFKIPG N HASTIDSRIKLLKRMFH +AEMRGPTCSGF WND QKCIV EK+ F++W
Sbjct: 47  MMAFKIPGCNVHASTIDSRIKLLKRMFHTLAEMRGPTCSGFRWNDEQKCIVIEKKEFNDW 106

Query: 61  VKSHPAAKGLLTKLFLHYDELSYVFGKDRATRGWAESFADVGSNNSAGYEPFIANATPDT 120
           VKSHPA KGLLTKLF HYDELSYVFGKDRA     E+FAD+G N+ A YE F ANA  D 
Sbjct: 107 VKSHPATKGLLTKLFPHYDELSYVFGKDRAMGAQVETFADIGLNDPARYEAFAANAALDM 166

Query: 121 DFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQ 180
           DFQPMYSQ LNMSPDELMGTR  RVS+ RYVSSGSKRKR GQA+DSG+V+RTAIE+GNEQ
Sbjct: 167 DFQPMYSQGLNMSPDELMGTRTVRVSKSRYVSSGSKRKRRGQASDSGEVIRTAIEFGNEQ 226

Query: 181 LNRIAE 186
           LNRIA+
Sbjct: 227 LNRIAD 232

[Close]
BLAST of MELO3C035642.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 21/85 (24.71%), Postives = 43/85 (50.59%), Query Frame = 0 

Query: 16  IDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNWVKSHPAAKGLLTKLF 75
           + +R K L+ +F ++  +      GF W+D ++ +VA+  V+D ++K HP ++    K  
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 76  LHYDELSYVFGKDRATRGWAESFAD 101
             Y +L  V+    +     ES ++
Sbjct: 126 PCYKDLCLVYSDGMSEHKAEESISE 148

[Close]
BLAST of MELO3C035642.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 21/85 (24.71%), Postives = 43/85 (50.59%), Query Frame = 0 

Query: 16  IDSRIKLLKRMFHAIAEMRGPTCSGFGWNDAQKCIVAEKEVFDNWVKSHPAAKGLLTKLF 75
           + +R K L+ +F ++  +      GF W+D ++ +VA+  V+D ++K HP ++    K  
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 76  LHYDELSYVFGKDRATRGWAESFAD 101
             Y +L  V+    +     ES ++
Sbjct: 126 PCYKDLCLVYSDGMSEHKAEESISE 148

The following BLAST results are available for this feature:
BLAST of MELO3C035642.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054347.14.02e-11288.17retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p... [more]
KAA0048374.18.35e-10984.41retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... [more]
KAA0060558.11.09e-10282.26retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon p... [more]
TYK05082.11.26e-10179.03retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052248.13.28e-10178.49retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon p... [more]
BLAST of MELO3C035642.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035642.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UIE91.94e-11288.17Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZA54.04e-10984.41Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BRF05.27e-10382.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1M06.10e-10279.03Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BSM91.59e-10178.49Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C035642.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02210.12.1e-0424.71unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.22.1e-0424.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..157
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035642.jh1.t1MELO3C035642.jh1.t1mRNA