MELO3C035633.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO3C035633.jh1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPentatricopeptide repeat-containing protein
Locationchr12: 16034263 .. 16034610 (+)
Sequence length348
RNA-Seq ExpressionMELO3C035633.jh1.t1
SyntenyMELO3C035633.jh1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAACCAAAAGAAATAATCCCCTTCTACGCTGCTCTCCTCGAAGCGTGCTCCTCCACCAAGAACCTCTACACTCACAAGCAAATTCACGCTCTTACCATAAGACTCCAAATCTCTTACAACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCCGCCTGCGCCCAACTCCCTCAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATGCTCTCATCAGAGCCCACTCTGCTCTCCATCTCTTCTCCCAATCCCTCTCCATTTTTCACCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTTTCCGCCGGTGCTGA

mRNA sequence

ATGTCCAAACCAAAAGAAATAATCCCCTTCTACGCTGCTCTCCTCGAAGCGTGCTCCTCCACCAAGAACCTCTACACTCACAAGCAAATTCACGCTCTTACCATAAGACTCCAAATCTCTTACAACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCCGCCTGCGCCCAACTCCCTCAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATGCTCTCATCAGAGCCCACTCTGCTCTCCATCTCTTCTCCCAATCCCTCTCCATTTTTCACCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTTTCCGCCGGTGCTGA

Coding sequence (CDS)

ATGTCCAAACCAAAAGAAATAATCCCCTTCTACGCTGCTCTCCTCGAAGCGTGCTCCTCCACCAAGAACCTCTACACTCACAAGCAAATTCACGCTCTTACCATAAGACTCCAAATCTCTTACAACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCCGCCTGCGCCCAACTCCCTCAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATGCTCTCATCAGAGCCCACTCTGCTCTCCATCTCTTCTCCCAATCCCTCTCCATTTTTCACCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTTTCCGCCGGTGCTGA

Protein sequence

MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTFRRC
Homology
[Close]
BLAST of MELO3C035633.jh1.t1 vs. NCBI nr
Match: KAA0059103.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 6.67e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]
BLAST of MELO3C035633.jh1.t1 vs. NCBI nr
Match: XP_008455480.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 193 bits (491), Expect = 6.67e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]
BLAST of MELO3C035633.jh1.t1 vs. NCBI nr
Match: XP_004144516.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sativus] >KGN43485.1 hypothetical protein Csa_020556 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 1.08e-57
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALL+ACSST NL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPTYLFN LIRAHS+L LFSQSLSIF HMLLSGKSIDRHT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHT 111

[Close]
BLAST of MELO3C035633.jh1.t1 vs. NCBI nr
Match: XP_038877225.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 182 bits (462), Expect = 1.59e-54
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP+EIIPFYAALLEACS+TKNL+T KQIHALTIR +IS++ FIRTKLASTYAACAQL 
Sbjct: 1   MPKPQEIIPFYAALLEACSATKNLHTLKQIHALTIRHRISHHDFIRTKLASTYAACAQLR 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF HMLLS KS D+HTF
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSRKSFDQHTF 112

[Close]
BLAST of MELO3C035633.jh1.t1 vs. NCBI nr
Match: XP_022973156.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 181 bits (459), Expect = 4.75e-54
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP++IIPFYAALL+ACSSTKN +T KQIHALTIRL IS++ FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF HMLLSGK IDRHT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHT 111

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q3E9N1 (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E98 PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-07
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 18  CSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLF 77
           C  + +L + ++ +AL I   +S N F+ +KL S+YA+  +   ++ +F   TRR  +L+
Sbjct: 34  CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93

Query: 78  NALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 112
           N++I+AH +   +++SL  F  MLLSG+S D  T
Sbjct: 94  NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFT 127

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q9C501 (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E57 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 25/99 (25.25%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 3   KPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQA 62
           +P E+      +L AC+ T  L   K IHA   R  +S + F+   L   Y  C  L +A
Sbjct: 257 RPNEVT--VVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEA 316

Query: 63  TTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHML 102
           +++F  A+++    +N++I   +      +++++F  M+
Sbjct: 317 SSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMM 353

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-04
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 10  FYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFA 69
           FYA+L+++ +    L   KQIHA  + L + ++ F+ TKL    ++   +  A  +F   
Sbjct: 23  FYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 82

Query: 70  TRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 113
            R   + +NA+IR +S  + F  +L ++ +M L+  S D  TF
Sbjct: 83  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTF 122

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UT42 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold786G00080 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 3.23e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy TrEMBL
Match: A0A1S3C0K0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495634 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 3.23e-59
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALLEACSSTKNL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 112
           QA TIFSFATRRPTYLFNALIRAHS+L LFSQSLSIF HMLLSGKS DRHTF
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTF 112

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy TrEMBL
Match: A0A0A0K1F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 5.22e-58
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP EIIPFYAALL+ACSST NL+T KQIHALTI L IS++HFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPTYLFN LIRAHS+L LFSQSLSIF HMLLSGKSIDRHT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHT 111

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1I7X0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471666 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 2.30e-54
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP++IIPFYAALL+ACSSTKN +T KQIHALTIRL IS++ FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF HMLLSGK IDRHT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHT 111

[Close]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1EHW3 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434233 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.40e-52
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MSKPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLP 60
           M KP++IIPFYAALL+ACSSTKN  T KQIHALTIRL IS++ FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 111
           QATTIFSFATRRPT+LFNALIRAHS+L LFSQSLSIF  MLLSGK IDRHT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHT 111

[Close]
BLAST of MELO3C035633.jh1.t1 vs. TAIR 10
Match: AT4G39952.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 0 

Query: 18  CSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLF 77
           C  + +L + ++ +AL I   +S N F+ +KL S+YA+  +   ++ +F   TRR  +L+
Sbjct: 34  CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93

Query: 78  NALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHT 112
           N++I+AH +   +++SL  F  MLLSG+S D  T
Sbjct: 94  NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFT 127

[Close]
BLAST of MELO3C035633.jh1.t1 vs. TAIR 10
Match: AT1G33350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 25/99 (25.25%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 3   KPKEIIPFYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQA 62
           +P E+      +L AC+ T  L   K IHA   R  +S + F+   L   Y  C  L +A
Sbjct: 257 RPNEVT--VVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEA 316

Query: 63  TTIFSFATRRPTYLFNALIRAHSALHLFSQSLSIFHHML 102
           +++F  A+++    +N++I   +      +++++F  M+
Sbjct: 317 SSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMM 353

[Close]
BLAST of MELO3C035633.jh1.t1 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-05
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 0 

Query: 10  FYAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFA 69
           FYA+L+++ +    L   KQIHA  + L + ++ F+ TKL    ++   +  A  +F   
Sbjct: 23  FYASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 82

Query: 70  TRRPTYLFNALIRAHSALHLFSQSLSIFHHMLLSGKSIDRHTF 113
            R   + +NA+IR +S  + F  +L ++ +M L+  S D  TF
Sbjct: 83  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTF 122

[Close]
BLAST of MELO3C035633.jh1.t1 vs. TAIR 10
Match: AT2G40720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 23/90 (25.56%), Postives = 47/90 (52.22%), Query Frame = 0 

Query: 11  YAALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFAT 70
           +   L ACS ++N    +QIH   +++ +  + ++ T L S Y+ C  + +A T+FS   
Sbjct: 275 FTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVV 334

Query: 71  RRPTYLFNALIRAHSALHLFSQSLSIFHHM 101
            +   ++NA++ A++       +L +F  M
Sbjct: 335 DKRLEIWNAMVAAYAENDYGYSALDLFGFM 364

[Close]
BLAST of MELO3C035633.jh1.t1 vs. TAIR 10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 27/92 (29.35%), Postives = 44/92 (47.83%), Query Frame = 0 

Query: 12  AALLEACSSTKNLYTHKQIHALTIRLQISYNHFIRTKLASTYAACAQLPQATTIFSFATR 71
           +++L +C+S   L    Q+HA TI+  +  + ++   L   YA C  L  A  +F     
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413

Query: 72  RPTYLFNALIRAHSALHL---FSQSLSIFHHM 101
               LFNA+I  +S L       ++L+IF  M
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDM 445

The following BLAST results are available for this feature:
BLAST of MELO3C035633.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059103.16.67e-5988.39pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627... [more]
XP_008455480.16.67e-5988.39PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-... [more]
XP_004144516.11.08e-5787.39pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sa... [more]
XP_038877225.11.59e-5483.93pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Benin... [more]
XP_022973156.14.75e-5483.78pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur... [more]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E9N12.8e-0735.11Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidop... [more]
Q9C5011.7e-0425.25Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana OX... [more]
Q9LTV83.8e-0430.10Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX... [more]
BLAST of MELO3C035633.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UT423.23e-5988.39Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3C0K03.23e-5988.39pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
A0A0A0K1F75.22e-5887.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1[more]
A0A6J1I7X02.30e-5483.78pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
A0A6J1EHW31.40e-5282.88pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc... [more]
BLAST of MELO3C035633.jh1.t1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G39952.12.0e-0835.11Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G33350.11.2e-0525.25Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G12770.12.7e-0530.10mitochondrial editing factor 22 [more]
AT2G40720.13.0e-0425.56Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39530.13.0e-0429.35Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 5..115
e-value: 5.9E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR47924:SF27SUBFAMILY NOT NAMEDcoord: 10..112
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 10..112

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035633.jh1MELO3C035633.jh1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035633.jh1.t1.exonMELO3C035633.jh1.t1.exonexon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035633.jh1.t1.start_codonMELO3C035633.jh1.t1.start_codonstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035633.jh1.t1.cdsMELO3C035633.jh1.t1.cdsCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035633.jh1.t1.stop_codonMELO3C035633.jh1.t1.stop_codonstop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035633.jh1.t1MELO3C035633.jh1.t1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding