MELO3C035620.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C035620.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	AP-3 complex subunit sigma-like
Location	chr12: 13896997 .. 13899219 (-)
Sequence length	565
RNA-Seq Expression	MELO3C035620.1
Synteny	MELO3C035620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTACAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAGTAATATTTCCTTATCCAATAATTTTCTTATAGTACTTATGTTTAGAATGTACTTGAATTGATGATTCTTTGAGAAGCTAGAAACTTGTCAAAAATGAATGTTGGTTGGTATTGTTCAATAAGTTGTAGTGCAATTATAGAGTGGGCTAGGCTAGTTGATTAGTGGGACTGGCAAATGCTAATGAGTTATAACAGATAAACTAGTTTTATGTGGTTCCTTGTATCGAAATTGCTTTAACTTCTCCTTCAAATGAACTATGGGGATTGGTATTTTCTTTCTGCTGCAGGACTCGCGTCTTGTTTACAAACACTTTGCAACCCTTTATTTTTTGCTTGTCTTTAACAGTTCTGAGAATAAGCTTGCCATGCTTGACCTGATACAACGTACTTCCAATATTTTATATGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAAGAGGACTTTAGTACTCCTTGTTACCTCAAGTTTTGAACCAGATGGTATTTGTTAAGAGGACTATAGCCATTGATGTGATTTAAAGGAATGTTTTTTCCTTTTGATCTTTTGATTATTATGAATTTCAACCTTCGATTCTTAATTATCTCTTTTGTATTTTCAGTTCCTTTGATGTTTATGCTTTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGGGCCTCAAGAAATTAGTACGAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAAGAAATGCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGGTATTTTAGATTTTATTTGTCTTTGTCTTGAATTGAGGACTATTTTTGTGGTTAGTTTCTGACGGGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATCAGCTTACTCTTAATAGTTGTTAGTTGATTTGTTTAACTGGATAAGTTCTGAACATACTTTGTTGTTGTGATGTTATCTACTTCTTGTAGACTAGCTCTGCTGTTGGTGGTACTTATTTTAGATCATGAATTTGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGGTCATTGAGTTTGATTGATAGAAGTAATGTTTTGTATATGACAATATTGAACAAATATGTAAAGTTTTCGAAATGTTGATATATATACGGTAAAATGTTAATATATGCTAAAGTTTTGGAATTGTTCTAGTGCATATTTATGTTTGAGTTTTAAAACTATATAGTTGTCGTTTATATGTAGTTGAGTTCTTGGACCAATGGGAGCATAATACAGGAACAATAATATAAATAAATTACAATTAAAAAAATGGAAAATTGCTTGACGATTCTGAAATGTCATGAACAATAAATGTTTTCACGGTTCGCAAATGTCATAAACAACAAAATTCTTGACGGTGTAATTAAAAAGCATACTCTTGACAGTTCCCAAATGTCATGAAAAAGAATACTCTTGACGAGTACAAAATGTCATAAATAATCACTTTCTTGACAGTTATTAAATGTCATGAAAAATGCACTCTTGACGGTTTTAAAATGTCATGAATATTCGTATTCTTGACGGTTTTTGTCATTCATAGTCACATTCTCGATAGTTCTAAACTGTCATTAAAACTTATAATCTTGACGGTTCTAAACTGTCATGAATAATTGAATACTTGACGGTTATAAACTGTCAATGTTAACAATTCTTGACGTTTTTTATAACTGTCAAGAAAATTGCCTTTCTTGACACTGGATTCAACGACGATTTTAAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACCGTCAAGAGAGTTAGTTTCTGTAGTCGTGCAATCCACCATGTATTATAAGGAACTTCAGTTAAGTTTGATTCGAAACATACTAAAGCATTATGCTTACCTTTATTCTCGAACCATGCCTTACGTTTTAGACAATCTTTCTGATAGTGTCCAG

mRNA sequence

TGGTACAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAAATTACAAAAGAAATGCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGTTTCTGACGGGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGAAAATTGCCTTTCTTGACACTGGATTCAACGACGATTTTAAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACCGTCAAGAGAGTTAGTTTCTGTAGTCGTGCAATCCACCATGTATTATAAGGAACTTCAGTTAAGTTTGATTCGAAACATACTAAAGCATTATGCTTACCTTTATTCTCGAACCATGCCTTACGTTTTAGACAATCTTTCTGATAGTGTCCAG

Coding sequence (CDS)

GGTACAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAAATTACAAAAGAAATGCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGTTTCTGACGGGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGAAAATTGCCTTTCTTGACACTGGATTCAACGACGATTTTAAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACCGTCAAGAGAGTTAGTTTCTGTAGTCGTGCAATCCACCATGTATTATAAGGAACTTCAGTTAAGTTTGATTCGAAACATACTAAAGCATTATGCTTACCTTTATTCTCGAACCATGCCTTACGTTTTAGACAATCTTTCTGATAGTGTCCAG

Protein sequence

GTVLCSRAENISNFVEAKSIFGSNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMRMQNASLFEAKFHSRKLPFLTLDSTTILKPSRIIILDSLKPSRELVSVVVQSTMYYKELQLSLIRNILKHYAYLYSRTMPYVLDNLSDSVQ

Homology

[Close]

BLAST of MELO3C035620.1 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 95/137 (69.34%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 3   VLCSRAENISNFVEAKSIFGS--------------------------------------- 62
           VLCSRAENISNFVEAKSIFGS                                       
Sbjct: 38  VLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILY 97

Query: 63  ---NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 98
              NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY
Sbjct: 98  DGFNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 157

[Close]

BLAST of MELO3C035620.1 vs. NCBI nr
Match: TYK03061.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-09
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 12  SNFVEAKSIFGSNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 61
           S++   + +F S YK NAYTKADLQC NAYTKEVESC PSDANINNVAK
Sbjct: 84  SHWGPCRQLFKS-YKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 131

[Close]

BLAST of MELO3C035620.1 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 7.2e-40
Identity = 95/137 (69.34%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 3   VLCSRAENISNFVEAKSIFGS--------------------------------------- 62
           VLCSRAENISNFVEAKSIFGS                                       
Sbjct: 38  VLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILY 97

Query: 63  ---NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 98
              NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY
Sbjct: 98  DGFNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 157

[Close]

BLAST of MELO3C035620.1 vs. ExPASy TrEMBL
Match: A0A5D3BTL5 (Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001620 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 12  SNFVEAKSIFGSNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 61
           S++   + +F S YK NAYTKADLQC NAYTKEVESC PSDANINNVAK
Sbjct: 84  SHWGPCRQLFKS-YKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 131

The following BLAST results are available for this feature:

BLAST of MELO3C035620.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464326.1	1.5e-39	69.34	PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo]	[more]
TYK03061.1	4.7e-09	73.47	putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CL75	7.2e-40	69.34	AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=...	[more]
A0A5D3BTL5	2.3e-09	73.47	Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of MELO3C035620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035620	MELO3C035620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035620.1:exon:353823	MELO3C035620.1:exon:353823	exon
MELO3C035620.1:exon:353822	MELO3C035620.1:exon:353822	exon
MELO3C035620.1:exon:353821	MELO3C035620.1:exon:353821	exon
MELO3C035620.1:exon:353820	MELO3C035620.1:exon:353820	exon
MELO3C035620.1:exon:353819	MELO3C035620.1:exon:353819	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035620.1:cds	MELO3C035620.1:cds	CDS
MELO3C035620.1:cds	MELO3C035620.1:cds_2	CDS
MELO3C035620.1:cds	MELO3C035620.1:cds_3	CDS
MELO3C035620.1:cds	MELO3C035620.1:cds_4	CDS
MELO3C035620.1:cds	MELO3C035620.1:cds_5	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035620.1:five_prime_utr	MELO3C035620.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035620.1	MELO3C035620.1-protein	polypeptide