MELO3C035620 (gene) Melon (DHL92) v4

Overview
NameMELO3C035620
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionAP-3 complex subunit sigma-like
Locationchr12: 13896997 .. 13899219 (-)
RNA-Seq ExpressionMELO3C035620
SyntenyMELO3C035620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTACAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAGTAATATTTCCTTATCCAATAATTTTCTTATAGTACTTATGTTTAGAATGTACTTGAATTGATGATTCTTTGAGAAGCTAGAAACTTGTCAAAAATGAATGTTGGTTGGTATTGTTCAATAAGTTGTAGTGCAATTATAGAGTGGGCTAGGCTAGTTGATTAGTGGGACTGGCAAATGCTAATGAGTTATAACAGATAAACTAGTTTTATGTGGTTCCTTGTATCGAAATTGCTTTAACTTCTCCTTCAAATGAACTATGGGGATTGGTATTTTCTTTCTGCTGCAGGACTCGCGTCTTGTTTACAAACACTTTGCAACCCTTTATTTTTTGCTTGTCTTTAACAGTTCTGAGAATAAGCTTGCCATGCTTGACCTGATACAACGTACTTCCAATATTTTATATGATGGATTTGTGACCTCTAGATTACTTATTATGGAAATGTTACAAGGCATCTAAGAGGACTTTAGTACTCCTTGTTACCTCAAGTTTTGAACCAGATGGTATTTGTTAAGAGGACTATAGCCATTGATGTGATTTAAAGGAATGTTTTTTCCTTTTGATCTTTTGATTATTATGAATTTCAACCTTCGATTCTTAATTATCTCTTTTGTATTTTCAGTTCCTTTGATGTTTATGCTTTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTAATTTGGGCCTCAAGAAATTAGTACGAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAAGAAATGCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGGTATTTTAGATTTTATTTGTCTTTGTCTTGAATTGAGGACTATTTTTGTGGTTAGTTTCTGACGGGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATCAGCTTACTCTTAATAGTTGTTAGTTGATTTGTTTAACTGGATAAGTTCTGAACATACTTTGTTGTTGTGATGTTATCTACTTCTTGTAGACTAGCTCTGCTGTTGGTGGTACTTATTTTAGATCATGAATTTGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGGTCATTGAGTTTGATTGATAGAAGTAATGTTTTGTATATGACAATATTGAACAAATATGTAAAGTTTTCGAAATGTTGATATATATACGGTAAAATGTTAATATATGCTAAAGTTTTGGAATTGTTCTAGTGCATATTTATGTTTGAGTTTTAAAACTATATAGTTGTCGTTTATATGTAGTTGAGTTCTTGGACCAATGGGAGCATAATACAGGAACAATAATATAAATAAATTACAATTAAAAAAATGGAAAATTGCTTGACGATTCTGAAATGTCATGAACAATAAATGTTTTCACGGTTCGCAAATGTCATAAACAACAAAATTCTTGACGGTGTAATTAAAAAGCATACTCTTGACAGTTCCCAAATGTCATGAAAAAGAATACTCTTGACGAGTACAAAATGTCATAAATAATCACTTTCTTGACAGTTATTAAATGTCATGAAAAATGCACTCTTGACGGTTTTAAAATGTCATGAATATTCGTATTCTTGACGGTTTTTGTCATTCATAGTCACATTCTCGATAGTTCTAAACTGTCATTAAAACTTATAATCTTGACGGTTCTAAACTGTCATGAATAATTGAATACTTGACGGTTATAAACTGTCAATGTTAACAATTCTTGACGTTTTTTATAACTGTCAAGAAAATTGCCTTTCTTGACACTGGATTCAACGACGATTTTAAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACCGTCAAGAGAGTTAGTTTCTGTAGTCGTGCAATCCACCATGTATTATAAGGAACTTCAGTTAAGTTTGATTCGAAACATACTAAAGCATTATGCTTACCTTTATTCTCGAACCATGCCTTACGTTTTAGACAATCTTTCTGATAGTGTCCAG

mRNA sequence

TGGTACAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAAATTACAAAAGAAATGCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGTTTCTGACGGGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGAAAATTGCCTTTCTTGACACTGGATTCAACGACGATTTTAAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACCGTCAAGAGAGTTAGTTTCTGTAGTCGTGCAATCCACCATGTATTATAAGGAACTTCAGTTAAGTTTGATTCGAAACATACTAAAGCATTATGCTTACCTTTATTCTCGAACCATGCCTTACGTTTTAGACAATCTTTCTGATAGTGTCCAG

Coding sequence (CDS)

GGTACAGTACTTTGCAGTCGAGCTGAGAACATCAGCAATTTCGTGGAGGCTAAGTCCATCTTCGGTTCAAATTACAAAAGAAATGCATATACAAAAGCAGACTTACAATGCATGAATGCATATACAAAAGAGGTTGAGAGTTGCTTCCCTTCTGATGCAAATATCAATAATGTTGCAAAGTTTCTGACGGGCACTGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTTTGGAAGCAACTCTAGGCATTAAATTCATTATGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGAAAATTGCCTTTCTTGACACTGGATTCAACGACGATTTTAAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACCGTCAAGAGAGTTAGTTTCTGTAGTCGTGCAATCCACCATGTATTATAAGGAACTTCAGTTAAGTTTGATTCGAAACATACTAAAGCATTATGCTTACCTTTATTCTCGAACCATGCCTTACGTTTTAGACAATCTTTCTGATAGTGTCCAG

Protein sequence

GTVLCSRAENISNFVEAKSIFGSNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISYVDDSGGLEATLGIKFIMRMQNASLFEAKFHSRKLPFLTLDSTTILKPSRIIILDSLKPSRELVSVVVQSTMYYKELQLSLIRNILKHYAYLYSRTMPYVLDNLSDSVQ
Homology
[Close]
BLAST of MELO3C035620 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 95/137 (69.34%), Postives = 95/137 (69.34%), Query Frame = 0 

Query: 3   VLCSRAENISNFVEAKSIFGS--------------------------------------- 62
           VLCSRAENISNFVEAKSIFGS                                       
Sbjct: 38  VLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILY 97

Query: 63  ---NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 98
              NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY
Sbjct: 98  DGFNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 157

[Close]
BLAST of MELO3C035620 vs. NCBI nr
Match: TYK03061.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-09
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 12  SNFVEAKSIFGSNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 61
           S++   + +F S YK NAYTKADLQC NAYTKEVESC PSDANINNVAK
Sbjct: 84  SHWGPCRQLFKS-YKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 131

[Close]
BLAST of MELO3C035620 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 7.2e-40
Identity = 95/137 (69.34%), Postives = 95/137 (69.34%), Query Frame = 0 

Query: 3   VLCSRAENISNFVEAKSIFGS--------------------------------------- 62
           VLCSRAENISNFVEAKSIFGS                                       
Sbjct: 38  VLCSRAENISNFVEAKSIFGSDSRLVYKHFATLYFLLVFNSSENKLAMLDLIQRTSNILY 97

Query: 63  ---NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 98
              NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY
Sbjct: 98  DGFNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSIKKQCKVLMISY 157

[Close]
BLAST of MELO3C035620 vs. ExPASy TrEMBL
Match: A0A5D3BTL5 (Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001620 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 12  SNFVEAKSIFGSNYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 61
           S++   + +F S YK NAYTKADLQC NAYTKEVESC PSDANINNVAK
Sbjct: 84  SHWGPCRQLFKS-YKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 131

The following BLAST results are available for this feature:
BLAST of MELO3C035620 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464326.11.5e-3969.34PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
TYK03061.14.7e-0973.47putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C035620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CL757.2e-4069.34AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=... [more]
A0A5D3BTL52.3e-0973.47Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of MELO3C035620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035620.1MELO3C035620.1mRNA