MELO3C029558.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C029558.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 27008395 .. 27008600 (+)
Sequence length	206
RNA-Seq Expression	MELO3C029558.1
Synteny	MELO3C029558.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGAACTCCTCGATATTCGCTTTGACACTCCAAAGGGCAACAAAACTAACACCGAACTCCCGGAGGAAAGAGCTTCACACAACATGCGCATAATGACAATCCCAAAAAAGATGATCAAGATCTTCCTTCGCCTTCCGACAAAGCATGCAACAAAAAAGCCTGACAAGCAAAGTTCTCCAAACATGCCTATCAACAGTAT

mRNA sequence

ATGGAGAAGGAACTCCTCGATATTCGCTTTGACACTCCAAAGGGCAACAAAACTAACACCGAACTCCCGGAGGAAAGAGCTTCACACAACATGCGCATAATGACAATCCCAAAAAAGATGATCAAGATCTTCCTTCGCCTTCCGACAAAGCATGCAACAAAAAAGCCTGACAAGCAAAGTTCTCCAAACATGCCTATCAACAGTAT

Coding sequence (CDS)

ATGGAGAAGGAACTCCTCGATATTCGCTTTGACACTCCAAAGGGCAACAAAACTAACACCGAACTCCCGGAGGAAAGAGCTTCACACAACATGCGCATAATGACAATCCCAAAAAAGATGATCAAGATCTTCCTTCGCCTTCCGACAAAGCATGCAACAAAAAAGCCTGACAAGCAAAGTTCTCCAAACATGCCTATCAACAGT

Protein sequence

MEKELLDIRFDTPKGNKTNTELPEERASHNMRIMTIPKKMIKIFLRLPTKHATKKPDKQSSPNMPINS

Homology

[Close]

BLAST of MELO3C029558.1 vs. NCBI nr
Match: TYK13990.1 (uncharacterized protein E5676_scaffold1119G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MEKELLDIRFDTPKGNKTNTELPEERASHNMRIMTIPKKMIKIFLRLPTKHATKKPDKQS 60
          ME+ELL+   +T   +KTN EL +ERA H +RI+T+ K+MIK+FL L TK+ TK+P K+ 
Sbjct: 1  MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC 60

Query: 61 SP 63
           P
Sbjct: 61 PP 62

[Close]

BLAST of MELO3C029558.1 vs. ExPASy TrEMBL
Match: A0A5D3CRG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00150 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-07
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MEKELLDIRFDTPKGNKTNTELPEERASHNMRIMTIPKKMIKIFLRLPTKHATKKPDKQS 60
          ME+ELL+   +T   +KTN EL +ERA H +RI+T+ K+MIK+FL L TK+ TK+P K+ 
Sbjct: 1  MEEELLNGHTNTSLASKTNIELWQERAPHILRILTLSKEMIKVFLHLLTKNTTKRPSKEC 60

Query: 61 SP 63
           P
Sbjct: 61 PP 62

The following BLAST results are available for this feature:

BLAST of MELO3C029558.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C029558.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13990.1	1.0e-06	51.61	uncharacterized protein E5676_scaffold1119G00150 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C029558.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRG7	5.0e-07	51.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C029558.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C029558	MELO3C029558	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C029558.1:exon:335209	MELO3C029558.1:exon:335209	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C029558.1:cds	MELO3C029558.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C029558.1:three_prime_utr	MELO3C029558.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C029558.1	MELO3C029558.1-protein	polypeptide