MELO3C026916.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C026916.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 26503458 .. 26504050 (+)
Sequence length	593
RNA-Seq Expression	MELO3C026916.1
Synteny	MELO3C026916.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACATACAAACACAAACAAAATAACCTTACTTCTCATGGCTTCTCTTTACCCGTATTTCTTCATTTATCTCCTCTTCCTTCTTATTCTATCTTCTCCTACTCAATCTATGTGTGCTCGTTGCGTCCCCCCAAGCGCCCCTAGCACCATCGTTAGACCGCTTGCTGCCACGCCCGACAATGCTGAAGACTACGAGACTGTGAAGCCTCAACTTATTAACCGAAAGAGGCTGGTTTTTGGTGGGAATGAAGTCAAGAGCTGCCTTCCTAAAGGCTTTCGACGATCCTCCGCCCCTAGTCGATTTGTTAATTATCATACTTCTGGTGGTTGTTCTCCGACTACTGATCATTCTATTAACACCAACCCTTGAGAAAATGAAAAAAAGATAAAAAGAACAGAGAATATATGTTTTATTGTTTGTTCCATTTTTGTTGTATATGCTTCTCCCTCCTTCATCTAATTTATTTTTATATATGTTCCTCATATATAAAAATAACTTTTGTTTATTCAATTTTTCTTATTATAATTTGTTCTTCAAAAATTGTGGAACCCCAACTCATGAACCTTGATTATATATATGATTAATTATTTGCT

mRNA sequence

ATACATACAAACACAAACAAAATAACCTTACTTCTCATGGCTTCTCTTTACCCGTATTTCTTCATTTATCTCCTCTTCCTTCTTATTCTATCTTCTCCTACTCAATCTATGTGTGCTCGTTGCGTCCCCCCAAGCGCCCCTAGCACCATCGTTAGACCGCTTGCTGCCACGCCCGACAATGCTGAAGACTACGAGACTGTGAAGCCTCAACTTATTAACCGAAAGAGGCTGGTTTTTGGTGGGAATGAAGTCAAGAGCTGCCTTCCTAAAGGCTTTCGACGATCCTCCGCCCCTAGTCGATTTGTTAATTATCATACTTCTGGTGGTTGTTCTCCGACTACTGATCATTCTATTAACACCAACCCTTGAGAAAATGAAAAAAAGATAAAAAGAACAGAGAATATATGTTTTATTGTTTGTTCCATTTTTGTTGTATATGCTTCTCCCTCCTTCATCTAATTTATTTTTATATATGTTCCTCATATATAAAAATAACTTTTGTTTATTCAATTTTTCTTATTATAATTTGTTCTTCAAAAATTGTGGAACCCCAACTCATGAACCTTGATTATATATATGATTAATTATTTGCT

Coding sequence (CDS)

ATGGCTTCTCTTTACCCGTATTTCTTCATTTATCTCCTCTTCCTTCTTATTCTATCTTCTCCTACTCAATCTATGTGTGCTCGTTGCGTCCCCCCAAGCGCCCCTAGCACCATCGTTAGACCGCTTGCTGCCACGCCCGACAATGCTGAAGACTACGAGACTGTGAAGCCTCAACTTATTAACCGAAAGAGGCTGGTTTTTGGTGGGAATGAAGTCAAGAGCTGCCTTCCTAAAGGCTTTCGACGATCCTCCGCCCCTAGTCGATTTGTTAATTATCATACTTCTGGTGGTTGTTCTCCGACTACTGATCATTCTATTAACACCAACCCTTGA

Protein sequence

MASLYPYFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP

Homology

[Close]

BLAST of MELO3C026916.1 vs. NCBI nr
Match: KAE8646888.1 (hypothetical protein Csa_020968, partial [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 3.9e-48
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MASLYPYFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLI 60
           MASL+PYFFIYLLFLL+LSSPTQSMCARCVPPSAPSTIVRPL ATPDNAE YETVKPQLI
Sbjct: 3   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPL-ATPDNAEAYETVKPQLI 62

Query: 61  NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHS 106
           NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHS
Sbjct: 63  NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHS 106

[Close]

BLAST of MELO3C026916.1 vs. NCBI nr
Match: KAA0035234.1 (hypothetical protein E6C27_scaffold228G00110 [Cucumis melo var. makuwa] >TYK22389.1 hypothetical protein E5676_scaffold173G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 5.5e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 25  MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 84
           MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS
Sbjct: 1   MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 60

Query: 85  APSRFVNYHTSGGCSPTTDHSINTNP 111
           APSRFVNYHTSGGCSPTTDHSINTNP
Sbjct: 61  APSRFVNYHTSGGCSPTTDHSINTNP 86

[Close]

BLAST of MELO3C026916.1 vs. NCBI nr
Match: KAG6570806.1 (hypothetical protein SDJN03_29721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MASLYPYFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLI 60
           MASL+P+ F YLLFLL+LSSP+ SM ARCVPPSAPSTIV PL ATP+ AEDYETVKPQL 
Sbjct: 1   MASLFPFLF-YLLFLLLLSSPSPSMAARCVPPSAPSTIVTPL-ATPE-AEDYETVKPQL- 60

Query: 61  NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINT 109
           NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCS TTDHSINT
Sbjct: 61  NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINT 104

[Close]

BLAST of MELO3C026916.1 vs. NCBI nr
Match: KAF3961747.1 (hypothetical protein CMV_013666 [Castanea mollissima])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 56/91 (61.54%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 7  YFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLV 66
          Y+ + L  LL+LSS   +M AR +P SAPSTIVRPL +    A+DY T+KP L   K  V
Sbjct: 6  YYTLVLCLLLLLSSIDTNMAARKIPSSAPSTIVRPLVS---EAQDYVTMKP-LFKHKHRV 65

Query: 67 FGGNEVKSCLPKGFRRSSAPSRFVNYHTSGG 98
          F G EVKSCLPKGFR SSAPSRFVNYH  GG
Sbjct: 66 FRGKEVKSCLPKGFRHSSAPSRFVNYHALGG 92

[Close]

BLAST of MELO3C026916.1 vs. NCBI nr
Match: PON66506.1 (hypothetical protein PanWU01x14_109280, partial [Parasponia andersonii])

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 3   SLYPYFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINR 62
           SLY    +Y + LL+LSS   SM  R +P SAPST+VRPL    D  +DY +++P L   
Sbjct: 27  SLYVMILLYSIILLLLSSFDVSMAGRAIPSSAPSTVVRPLVTDAD--QDYVSLRPHLNPG 86

Query: 63  KRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSP 101
           +  VF G E K CLPKGFR +SAPSRFVNYH  G  SP
Sbjct: 87  QNQVFRGREFKGCLPKGFRHASAPSRFVNYHPLGALSP 122

[Close]

BLAST of MELO3C026916.1 vs. ExPASy TrEMBL
Match: A0A0A0KDD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147570 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MASLYPYFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLI 60
           MASL+PYFFIYLLFLL+LSSPTQSMCARCVPPSAPSTIVRPL ATPDNAE YETVKPQLI
Sbjct: 1   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPL-ATPDNAEAYETVKPQLI 60

Query: 61  NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP 111
           NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP
Sbjct: 61  NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP 109

[Close]

BLAST of MELO3C026916.1 vs. ExPASy TrEMBL
Match: A0A5D3DGK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00130 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 25  MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 84
           MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS
Sbjct: 1   MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 60

Query: 85  APSRFVNYHTSGGCSPTTDHSINTNP 111
           APSRFVNYHTSGGCSPTTDHSINTNP
Sbjct: 61  APSRFVNYHTSGGCSPTTDHSINTNP 86

[Close]

BLAST of MELO3C026916.1 vs. ExPASy TrEMBL
Match: A0A2P5CZN8 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_109280 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 3   SLYPYFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINR 62
           SLY    +Y + LL+LSS   SM  R +P SAPST+VRPL    D  +DY +++P L   
Sbjct: 27  SLYVMILLYSIILLLLSSFDVSMAGRAIPSSAPSTVVRPLVTDAD--QDYVSLRPHLNPG 86

Query: 63  KRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSP 101
           +  VF G E K CLPKGFR +SAPSRFVNYH  G  SP
Sbjct: 87  QNQVFRGREFKGCLPKGFRHASAPSRFVNYHPLGALSP 122

[Close]

BLAST of MELO3C026916.1 vs. ExPASy TrEMBL
Match: A0A2P5FTP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_029170 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.6e-16
Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 3   SLYPYFFIYLLFLLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINR 62
           SLY    +Y +  L+LSS   SM  R +P SAPST+VRPL    D  +DY +++P L   
Sbjct: 6   SLYVMILLYSIISLLLSSFDVSMAGRAIPSSAPSTVVRPLVTDAD--QDYVSLRPHLNPG 65

Query: 63  KRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSP 101
           +  VF G E K CLPKGFR +SAPSRFVNYH  G  SP
Sbjct: 66  QNQVFRGREFKGCLPKGFRHASAPSRFVNYHPLGALSP 101

[Close]

BLAST of MELO3C026916.1 vs. ExPASy TrEMBL
Match: A0A314YWA3 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_04778 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 15  LLILSSPTQSMCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKS 74
           LL  +    S+ AR +P SAPST+VRPL    +  + Y ++KPQ +N K+ VF G EVK 
Sbjct: 14  LLFFTCFDVSLAARNIPSSAPSTMVRPLVT--EGLDHYVSMKPQDLNHKQQVFHGTEVKD 73

Query: 75  CLPKGFRRSSAPSRFVNYHTSG-GCS 100
           CLPKGFR +SAPSR+VNYHT G GCS
Sbjct: 74  CLPKGFRHASAPSRYVNYHTLGQGCS 97

The following BLAST results are available for this feature:

BLAST of MELO3C026916.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C026916.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646888.1	3.9e-48	96.19	hypothetical protein Csa_020968, partial [Cucumis sativus]	[more]
KAA0035234.1	5.5e-42	100.00	hypothetical protein E6C27_scaffold228G00110 [Cucumis melo var. makuwa] >TYK2238...	[more]
KAG6570806.1	1.5e-39	87.04	hypothetical protein SDJN03_29721, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3961747.1	2.1e-17	61.54	hypothetical protein CMV_013666 [Castanea mollissima]	[more]
PON66506.1	2.3e-16	53.06	hypothetical protein PanWU01x14_109280, partial [Parasponia andersonii]	[more]

BLAST of MELO3C026916.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD3	1.4e-51	96.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147570 PE=4 SV=1	[more]
A0A5D3DGK4	2.6e-42	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P5CZN8	1.1e-16	53.06	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5FTP0	5.6e-16	52.04	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_029170 PE=4 SV...	[more]
A0A314YWA3	4.7e-15	55.81	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_047...	[more]

BLAST of MELO3C026916.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36619:SF2	OS04G0208900 PROTEIN	coord: 1..103
None	No IPR available	PANTHER	PTHR36619	OS04G0208900 PROTEIN	coord: 1..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026916	MELO3C026916	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026916.1:exon:334731	MELO3C026916.1:exon:334731	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026916.1:five_prime_utr	MELO3C026916.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026916.1:cds	MELO3C026916.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026916.1:three_prime_utr	MELO3C026916.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C026916.1	MELO3C026916.1-protein	polypeptide