MELO3C026611.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C026611.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr04: 25772024 .. 25772350 (+)
Sequence length	327
RNA-Seq Expression	MELO3C026611.1
Synteny	MELO3C026611.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTCGACGACTGGGAACTCCTCGATTGCCACGAAGATCGTGAAGAGAAAAGCAGGCACGAAAACGAAGTAATTTCCGGCCAGAAGTTGATCGCCGACACGAAAAAGGAGTTGGAAATCGTCGCGGAGTTTGAGGTGGAGGAAGAGGAAAAGGAGAATTCAAGACGAGGGATGGATATGGCGACGGAGAAAAAGAAACAACGGGGGAGAGCGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACGATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGA

mRNA sequence

ATGGGACTCGACGACTGGGAACTCCTCGATTGCCACGAAGATCGTGAAGAGAAAAGCAGGCACGAAAACGAAGTAATTTCCGGCCAGAAGTTGATCGCCGACACGAAAAAGGAGTTGGAAATCGTCGCGGAGTTTGAGGTGGAGGAAGAGGAAAAGGAGAATTCAAGACGAGGGATGGATATGGCGACGGAGAAAAAGAAACAACGGGGGAGAGCGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACGATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGA

Coding sequence (CDS)

ATGGGACTCGACGACTGGGAACTCCTCGATTGCCACGAAGATCGTGAAGAGAAAAGCAGGCACGAAAACGAAGTAATTTCCGGCCAGAAGTTGATCGCCGACACGAAAAAGGAGTTGGAAATCGTCGCGGAGTTTGAGGTGGAGGAAGAGGAAAAGGAGAATTCAAGACGAGGGATGGATATGGCGACGGAGAAAAAGAAACAACGGGGGAGAGCGGTTGTTTGTTCGTTTGGAATTGCTGTGGCGGCTACGATTTGTAGTGTGTTGTTGGGAAGCCATAGCCACCACCATGGGGGAGGTGCGTTTGTGAATAAACGCCATTGTTGA

Protein sequence

MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMDMATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC

Homology

[Close]

BLAST of MELO3C026611.1 vs. NCBI nr
Match: KAA0057194.1 (hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK18767.1 hypothetical protein E5676_scaffold257G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 4.4e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD 60
           MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD
Sbjct: 1   MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD 60

Query: 61  MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 109
           MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC
Sbjct: 61  MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 108

[Close]

BLAST of MELO3C026611.1 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_001232 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MGLDDWELLDCHEDR-EEKSR-HENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRG 60
           MGLDDWELLDCHED  +EKSR HEN VISGQKLI DTK E+E VAEF+VEEEEK +SR G
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60

Query: 61  MDMATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 109
           MDMA EK+KQ GR VVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC
Sbjct: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 110

[Close]

BLAST of MELO3C026611.1 vs. ExPASy TrEMBL
Match: A0A5D3D5E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00740 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.1e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD 60
           MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD
Sbjct: 1   MGLDDWELLDCHEDREEKSRHENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRGMD 60

Query: 61  MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 109
           MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC
Sbjct: 61  MATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 108

[Close]

BLAST of MELO3C026611.1 vs. ExPASy TrEMBL
Match: A0A0A0LG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.9e-41
Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MGLDDWELLDCHEDR-EEKSR-HENEVISGQKLIADTKKELEIVAEFEVEEEEKENSRRG 60
           MGLDDWELLDCHED  +EKSR HEN VISGQKLI DTK E+E VAEF+VEEEEK +SR G
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRPHENVVISGQKLIGDTKNEMEAVAEFDVEEEEKVDSRGG 60

Query: 61  MDMATEKKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 109
           MDMA EK+KQ GR VVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC
Sbjct: 61  MDMAMEKRKQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRHC 110

The following BLAST results are available for this feature:

BLAST of MELO3C026611.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057194.1	4.4e-52	100.00	hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK1876...	[more]
KGN59752.1	1.0e-40	84.55	hypothetical protein Csa_001232 [Cucumis sativus]	[more]

BLAST of MELO3C026611.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C026611.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5E0	2.1e-52	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LG95	4.9e-41	84.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1	[more]

BLAST of MELO3C026611.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026611	MELO3C026611	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026611.1:exon:120460	MELO3C026611.1:exon:120460	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026611.1:cds	MELO3C026611.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C026611.1	MELO3C026611.1-protein	polypeptide