MELO3C018985.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C018985.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	60S acidic ribosomal protein P1-like
Location	chr07: 14571812 .. 14573386 (-)
Sequence length	990
RNA-Seq Expression	MELO3C018985.1
Synteny	MELO3C018985.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACCCTAAATCCTAACACCTCTTCGCTCAATATATATTCCGATTCAGAGCAGTGGCGATCACCGTAAGCGCATTTTGCCTCCCAATCGTCTCCTAGTATGTTCCTCATCTGAGATCTTCATTATTCAATCTTGCTTCTCTTTCTCCATCGTTTTCTAATGCTTTTCGAGTTCTGATTGTTTAATTCGCATATCAGGCCATCTATTAGCCATGTCTACCAGTGAACTCGCCTGCGCCTACGCCGCCCTGGCTCTTCACGACGATGGAATCGCAATCACTGTACCAATCATTATCTTTCCTTGTATATATCATTTTTCCTTCTTTGGATTGTTTGATGCGTGATTAATTTGCCTATTGGGTTTAGGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTAGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCGGAGAAGAGGAACATTGGGGATCTTCTTCTTAATGTTGGATGTGGAGGTGGCGCTGCGGCTCCCGTGGCTGTAGCTGCTCCTACCGCTAGTGCTGCTGCCGCTTCTGCCATCGAGGAAAAGAAGGTATGGTGATGAATGTTTAACTGTTCTTGTAGTGAATCTTTCTGTAGATGCCCTCCTCATTTTAACAAACTCCTTTACTTCTCTGTACCTGCTAGCTCTAAATTTCCATTTACGCGCGATTTTGAATAAGGATCTCTTTCGTATATATCCATATAACACACGTCCTAATACTATTAGTTACTGCTGAATTAGTTAAGTATGAAAAAAAATGAACTCTTTAACTGTTGCCAATATAGTTTTTTTTTTTTTTTTTTGTAATCAACCCGTTAGGTAGTTCTTAATATTCCTTTGAACTTTTGAAGTTTAGGTTTTCATGTATCCAAGAGAGAGATTCAATAGAAAATTGAATATTGATGAGGGTAGTTTGTACTTTTAGAAATTTTAACTGCCACCTTCATTGATTGAAATATTAGTGAATTAGATCTTTATCGTTGCTATTTAGTTTCATTCGCCTCCTTTTTCCCTTTTCTTCGATTTGTTCATTTAAGTCAACTATGCAGGAGGAGCCAAAGGAGGAGAGCGACGATGACATGGGATTCAGCTTATTCGATTAAGAGGCTTTCTTTAGTTTTGTAGGATTTTATTAGGAAACTATTGGGTGGGTAGCTTAATCTTGATTTTCCGCTGTTGGTCTCAAGATTTGTTTTTTTTACTAGGCCGTTTTGAGTTTTGATTTGCCTTCAATGTACGATGGTAACTGCATCTTTTCACTCCTTTTTCTTAACTACACATTGGAATGAGATCAAACTTTATGAGAGGAATTCTTTGGTTAAACCCTGGAACCACGTTTTCTTGGTTTATGATTTCTAGGTTTAGTTAATAAGCACTTTTGAAATTACATTATATTTCGTTTCAAACATTCTTTTCAGTAAATTCTTTTTGAAAATGATATTAATGAAAACTCATCTATATCAATGATTTTTTTGAATTATTTCTAGTTGATAGCATTTGCTCTCTTCTTTTATTTATTGAAGTTGTAACAATAATATTGGGCTTTAAACAAT

mRNA sequence

GAAAAACCCTAAATCCTAACACCTCTTCGCTCAATATATATTCCGATTCAGAGCAGTGGCGATCACCGTAAGCGCATTTTGCCTCCCAATCGTCTCCTAGTATGTTCCTCATCTGAGATCTTCATTATTCAATCTTGCTTCTCTTTCTCCATCGTTTTCTAATGCTTTTCGAGTTCTGATTGTTTAATTCGCATATCAGGCCATCTATTAGCCATGTCTACCAGTGAACTCGCCTGCGCCTACGCCGCCCTGGCTCTTCACGACGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTAGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCGGAGAAGAGGAACATTGGGGATCTTCTTCTTAATGTTGGATGTGGAGGTGGCGCTGCGGCTCCCGTGGCTGTAGCTGCTCCTACCGCTAGTGCTGCTGCCGCTTCTGCCATCGAGGAAAAGAAGGAGGAGCCAAAGGAGGAGAGCGACGATGACATGGGATTCAGCTTATTCGATTAAGAGGCTTTCTTTAGTTTTGTAGGATTTTATTAGGAAACTATTGGGTGGGTAGCTTAATCTTGATTTTCCGCTGTTGGTCTCAAGATTTGTTTTTTTTACTAGGCCGTTTTGAGTTTTGATTTGCCTTCAATGTACGATGGTAACTGCATCTTTTCACTCCTTTTTCTTAACTACACATTGGAATGAGATCAAACTTTATGAGAGGAATTCTTTGGTTAAACCCTGGAACCACGTTTTCTTGGTTTATGATTTCTAGGTTTAGTTAATAAGCACTTTTGAAATTACATTATATTTCGTTTCAAACATTCTTTTCAGTAAATTCTTTTTGAAAATGATATTAATGAAAACTCATCTATATCAATGATTTTTTTGAATTATTTCTAGTTGATAGCATTTGCTCTCTTCTTTTATTTATTGAAGTTGTAACAATAATATTGGGCTTTAAACAAT

Coding sequence (CDS)

ATGTCTACCAGTGAACTCGCCTGCGCCTACGCCGCCCTGGCTCTTCACGACGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTAGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCGGAGAAGAGGAACATTGGGGATCTTCTTCTTAATGTTGGATGTGGAGGTGGCGCTGCGGCTCCCGTGGCTGTAGCTGCTCCTACCGCTAGTGCTGCTGCCGCTTCTGCCATCGAGGAAAAGAAGGAGGAGCCAAAGGAGGAGAGCGACGATGACATGGGATTCAGCTTATTCGATTAA

Protein sequence

MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD

Homology

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BLAST of MELO3C018985.1 vs. NCBI nr
Match: XP_008455614.1 (PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. NCBI nr
Match: KAA0045366.1 (60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPVAVAAPTASAA ASAIEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAVASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. NCBI nr
Match: XP_038905168.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 8.0e-46
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPVAVAAP  SAAAA A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. NCBI nr
Match: XP_004138012.2 (60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothetical protein Csa_013711 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAA VAVAAPTASAAAA AIEEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. NCBI nr
Match: XP_038905286.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAV+AAAGL VESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVIAAAGLSVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPVAVAAP  SAAAA A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-33
Identity = 82/110 (74.55%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           M++ ELAC YAAL L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGCGGGAAAPVAVAAPT--ASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +VG GGG AAPVA AAP   A+AAAA A+EEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGG-AAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of MELO3C018985.1 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-30
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVAVAAPTA---SAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APVA AAP A   +AAA +A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MELO3C018985.1 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-30
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVAVAAPT----ASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APVA AAP     A+AAA +A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MELO3C018985.1 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-28
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGC-GGGAAAPVAVAAPTA---SAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG  GGG  APV+ AAP A   +AAAA A EEKK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MELO3C018985.1 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-24
Identity = 67/109 (61.47%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELAC YAAL LHDDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEES-DDDMGFSLFD 109
           NVG GGGAA   A AAP A  A A+    KKEE KE S ++DMGFSLFD
Sbjct: 61  NVGAGGGAAP--AAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107

[Close]

BLAST of MELO3C018985.1 vs. ExPASy TrEMBL
Match: A0A1S3C0X1 (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.1e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. ExPASy TrEMBL
Match: A0A5A7TTB2 (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001460 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPVAVAAPTASAA ASAIEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVAVAAPTASAAVASAIEEKKEEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. ExPASy TrEMBL
Match: A0A0A0LTV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.1e-46
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPTASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAA VAVAAPTASAAAA AIEEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAASVAVAAPTASAAAAPAIEEKREEPKEESDDDMGFSLFD 108

[Close]

BLAST of MELO3C018985.1 vs. ExPASy TrEMBL
Match: A0A6J1CGB2 (60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011416 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.2e-43
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAA+AL+DDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAP---TASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAAPV+VAAP    A++AAA A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of MELO3C018985.1 vs. ExPASy TrEMBL
Match: A0A6J1G2H4 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111450051 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.4e-42
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAALALHDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAPVAVAAPT--ASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           NVGCGGGAAA V+VAAP   A++AAA A+EEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGGAASAAAPAVEEKKEEPKEESDDDMGFSLFD 110

[Close]

BLAST of MELO3C018985.1 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-31
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVAVAAPTA---SAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APVA AAP A   +AAA +A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MELO3C018985.1 vs. TAIR 10
Match: AT1G01100.2 (60S acidic ribosomal protein family )

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-31
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVAVAAPTA---SAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APVA AAP A   +AAA +A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MELO3C018985.1 vs. TAIR 10
Match: AT1G01100.4 (60S acidic ribosomal protein family )

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-31
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVAVAAPTA---SAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APVA AAP A   +AAA +A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MELO3C018985.1 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVAVAAPT----ASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APVA AAP     A+AAA +A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MELO3C018985.1 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-31
Identity = 73/113 (64.60%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVAVAAPT----ASAAAASAIEEKKEEPKEESDDDMGFSLFD 109
           +NVG GGG  APVA AAP     A+AAA +A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

The following BLAST results are available for this feature:

BLAST of MELO3C018985.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455614.1	1.5e-47	100.00	PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo]	[more]
KAA0045366.1	4.2e-47	99.07	60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038905168.1	8.0e-46	96.30	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]
XP_004138012.2	1.0e-45	97.22	60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothetical prote...	[more]
XP_038905286.1	1.5e-44	94.44	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]

BLAST of MELO3C018985.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	2.8e-33	74.55	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
Q8LCW9	4.9e-30	65.18	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
Q8LEQ0	6.4e-30	64.60	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
O23095	2.1e-28	64.60	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
P29763	1.4e-24	61.47	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of MELO3C018985.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0X1	7.1e-48	100.00	60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7TTB2	2.1e-47	99.07	60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0LTV1	5.1e-46	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1	[more]
A0A6J1CGB2	5.2e-43	90.09	60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G2H4	3.4e-42	90.00	60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]

BLAST of MELO3C018985.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01100.1	3.5e-31	65.18	60S acidic ribosomal protein family	[more]
AT1G01100.2	3.5e-31	65.18	60S acidic ribosomal protein family	[more]
AT1G01100.4	3.5e-31	65.18	60S acidic ribosomal protein family	[more]
AT5G47700.1	4.5e-31	64.60	60S acidic ribosomal protein family	[more]
AT5G47700.2	4.5e-31	64.60	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..107 e-value: 2.3E-24 score: 85.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..108
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..108
None	No IPR available	PANTHER	PTHR45696:SF20	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..108
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 16..107 e-value: 1.92615E-18 score: 71.9691
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..63 e-value: 7.0E-30 score: 104.7
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..108 score: 14.019437

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018985	MELO3C018985	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018985.1:exon:210119	MELO3C018985.1:exon:210119	exon
MELO3C018985.1:exon:210118	MELO3C018985.1:exon:210118	exon
MELO3C018985.1:exon:210117	MELO3C018985.1:exon:210117	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018985.1:three_prime_utr	MELO3C018985.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018985.1:cds	MELO3C018985.1:cds	CDS
MELO3C018985.1:cds	MELO3C018985.1:cds_2	CDS
MELO3C018985.1:cds	MELO3C018985.1:cds_3	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018985.1:five_prime_utr	MELO3C018985.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018985.1	MELO3C018985.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome