MELO3C006987.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C006987.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gypsy/ty3 element polyprotein
Location	chr06: 8201357 .. 8201795 (+)
Sequence length	439
RNA-Seq Expression	MELO3C006987.1
Synteny	MELO3C006987.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTAGACACCGTGTGGTGGAGAAAGTGAAAGTTTCATGGAAGAACTACGAACTCATCATGGAAAGAGGAAGGGCCCAGCAAAGGGATTTCTAAGAACTACGTGGTCACCTTGGAAGGTCATAAAAGAGGACAGATTACCTCTTTCATTGGGGGGAGTTGATTTGATCCTTGGAATGCAGCGGTAGAGAACCTTGGGTATGATGGAGGTGGATTGGAAGAACTTCACCCTGACGATTGGTGTGGGAGAAGAACGATATTCAGGGGGACCCAAGGAGAAGAGAGGTTTCGCTAAAATCCTTGCAGAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACATGTCCTTCGGATGGAGCATATGAAGGTGAGGACTGGAATTACGAACGATTACAGTGGAGTTAGAGATGGTAGAAGAGCAAGGGGAGAGGTCTCAG

mRNA sequence

ATGGAATTAGACACCGTGTGGTGGAGAAAGTGAAAGTTTCATGGAAGAACTACGAACTCATCATGGAAAGAGGAAGGGCCCAGCAAAGGGATTTCTAAGAACTACGTGGTCACCTTGGAAGGTCATAAAAGAGGACAGATTACCTCTTTCATTGGGGGGAGTTGATTTGATCCTTGGAATGCAGCGGTAGAGAACCTTGGGTATGATGGAGGTGGATTGGAAGAACTTCACCCTGACGATTGGTGTGGGAGAAGAACGATATTCAGGGGGACCCAAGGAGAAGAGAGGTTTCGCTAAAATCCTTGCAGAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACATGTCCTTCGGATGGAGCATATGAAGGTGAGGACTGGAATTACGAACGATTACAGTGGAGTTAGAGATGGTAGAAGAGCAAGGGGAGAGGTCTCAG

Coding sequence (CDS)

ATGATGGAGGTGGATTGGAAGAACTTCACCCTGACGATTGGTGTGGGAGAAGAACGATATTCAGGGGGACCCAAGGAGAAGAGAGGTTTCGCTAAAATCCTTGCAGAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACATGTCCTTCGGATGGAGCATATGA

Protein sequence

MMEVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNMSFGWSI

Homology

[Close]

BLAST of MELO3C006987.1 vs. NCBI nr
Match: KAA0031882.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 5.4e-19
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNMSFGWSI 55
           EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMN SFG SI
Sbjct: 355 EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNKSFGRSI 406

[Close]

BLAST of MELO3C006987.1 vs. NCBI nr
Match: KAA0051286.1 (uncharacterized protein E6C27_scaffold2143G00450 [Cucumis melo var. makuwa] >TYK29976.1 uncharacterized protein E5676_scaffold734G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKK 39
           EVDWKNFTLTIG G+ERYS GPKEKRGFAKILAEKK
Sbjct: 92  EVDWKNFTLTIGAGKERYSEGPKEKRGFAKILAEKK 127

[Close]

BLAST of MELO3C006987.1 vs. ExPASy TrEMBL
Match: A0A5A7SLB5 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46346G00030 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-19
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNMSFGWSI 55
           EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMN SFG SI
Sbjct: 355 EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNKSFGRSI 406

[Close]

BLAST of MELO3C006987.1 vs. ExPASy TrEMBL
Match: A0A5A7UAQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G00030 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-10
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKK 39
           EVDWKNFTLTIG G+ERYS GPKEKRGFAKILAEKK
Sbjct: 92  EVDWKNFTLTIGAGKERYSEGPKEKRGFAKILAEKK 127

The following BLAST results are available for this feature:

BLAST of MELO3C006987.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031882.1	5.4e-19	96.15	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
KAA0051286.1	1.8e-09	91.67	uncharacterized protein E6C27_scaffold2143G00450 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of MELO3C006987.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C006987.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLB5	2.6e-19	96.15	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UAQ5	8.5e-10	91.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C006987.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006987	MELO3C006987	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006987.1:exon:166740	MELO3C006987.1:exon:166740	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006987.1:five_prime_utr	MELO3C006987.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006987.1:cds	MELO3C006987.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006987.1:three_prime_utr	MELO3C006987.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006987.1	MELO3C006987.1-protein	polypeptide