MELO3C006987 (gene) Melon (DHL92) v4

Overview
NameMELO3C006987
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGypsy/ty3 element polyprotein
Locationchr06: 8201357 .. 8201795 (+)
RNA-Seq ExpressionMELO3C006987
SyntenyMELO3C006987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTAGACACCGTGTGGTGGAGAAAGTGAAAGTTTCATGGAAGAACTACGAACTCATCATGGAAAGAGGAAGGGCCCAGCAAAGGGATTTCTAAGAACTACGTGGTCACCTTGGAAGGTCATAAAAGAGGACAGATTACCTCTTTCATTGGGGGGAGTTGATTTGATCCTTGGAATGCAGCGGTAGAGAACCTTGGGTATGATGGAGGTGGATTGGAAGAACTTCACCCTGACGATTGGTGTGGGAGAAGAACGATATTCAGGGGGACCCAAGGAGAAGAGAGGTTTCGCTAAAATCCTTGCAGAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACATGTCCTTCGGATGGAGCATATGAAGGTGAGGACTGGAATTACGAACGATTACAGTGGAGTTAGAGATGGTAGAAGAGCAAGGGGAGAGGTCTCAG

mRNA sequence

ATGGAATTAGACACCGTGTGGTGGAGAAAGTGAAAGTTTCATGGAAGAACTACGAACTCATCATGGAAAGAGGAAGGGCCCAGCAAAGGGATTTCTAAGAACTACGTGGTCACCTTGGAAGGTCATAAAAGAGGACAGATTACCTCTTTCATTGGGGGGAGTTGATTTGATCCTTGGAATGCAGCGGTAGAGAACCTTGGGTATGATGGAGGTGGATTGGAAGAACTTCACCCTGACGATTGGTGTGGGAGAAGAACGATATTCAGGGGGACCCAAGGAGAAGAGAGGTTTCGCTAAAATCCTTGCAGAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACATGTCCTTCGGATGGAGCATATGAAGGTGAGGACTGGAATTACGAACGATTACAGTGGAGTTAGAGATGGTAGAAGAGCAAGGGGAGAGGTCTCAG

Coding sequence (CDS)

ATGATGGAGGTGGATTGGAAGAACTTCACCCTGACGATTGGTGTGGGAGAAGAACGATATTCAGGGGGACCCAAGGAGAAGAGAGGTTTCGCTAAAATCCTTGCAGAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACATGTCCTTCGGATGGAGCATATGA

Protein sequence

MMEVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNMSFGWSI
Homology
[Close]
BLAST of MELO3C006987 vs. NCBI nr
Match: KAA0031882.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 5.4e-19
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNMSFGWSI 55
           EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMN SFG SI
Sbjct: 355 EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNKSFGRSI 406

[Close]
BLAST of MELO3C006987 vs. NCBI nr
Match: KAA0051286.1 (uncharacterized protein E6C27_scaffold2143G00450 [Cucumis melo var. makuwa] >TYK29976.1 uncharacterized protein E5676_scaffold734G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKK 39
           EVDWKNFTLTIG G+ERYS GPKEKRGFAKILAEKK
Sbjct: 92  EVDWKNFTLTIGAGKERYSEGPKEKRGFAKILAEKK 127

[Close]
BLAST of MELO3C006987 vs. ExPASy TrEMBL
Match: A0A5A7SLB5 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46346G00030 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-19
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNMSFGWSI 55
           EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMN SFG SI
Sbjct: 355 EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNKSFGRSI 406

[Close]
BLAST of MELO3C006987 vs. ExPASy TrEMBL
Match: A0A5A7UAQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G00030 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.5e-10
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 3   EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKK 39
           EVDWKNFTLTIG G+ERYS GPKEKRGFAKILAEKK
Sbjct: 92  EVDWKNFTLTIGAGKERYSEGPKEKRGFAKILAEKK 127

The following BLAST results are available for this feature:
BLAST of MELO3C006987 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031882.15.4e-1996.15gypsy/ty3 element polyprotein [Cucumis melo var. makuwa][more]
KAA0051286.11.8e-0991.67uncharacterized protein E6C27_scaffold2143G00450 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of MELO3C006987 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C006987 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SLB52.6e-1996.15Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7UAQ58.5e-1091.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C006987 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006987.1MELO3C006987.1mRNA