MELO3C001992.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C001992.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr12: 25597998 .. 25598553 (+)
Sequence length	267
RNA-Seq Expression	MELO3C001992.1
Synteny	MELO3C001992.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTTAAGTCTTAACTAATTTTGGAATCATCAAGGTACCAAAATGGTACGATGCGGGGAAAGCAGAGTATTTTGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAATCAGAAGACGGCAAGATATAAAGAACTCAGGAAATGTAAATAAATATCCAATATTTAAGCAATACAGCTTGCCACCAAATGATGTTGGATACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAAGAAAAGGAGATTGCTAATGGTAAATGTCTCAAAAACAAACTAGTTAATCAACTACCTTAATTATTACACGTATAATAATGCGATTAATCAAAAGTTTTGATGATCTCTACAGGAAGACTGGCAATGTTGGCATCCTTGGGACTCATTGTTCAACACAATGTGCCTGGAAAAGGTCCATTTGACAACATCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG

mRNA sequence

ATGGCTGATGGGCGATGCTCGGAGTTGCAGCAATACAGCTTGCCACCAAATGATGTTGGATACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATCCTTGGGACTCATTGTTCAACACAATGTGCCTGGAAAAGGTCCATTTGACAACATCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG

Coding sequence (CDS)

ATGGCTGATGGGCGATGCTCGGAGTTGCAGCAATACAGCTTGCCACCAAATGATGTTGGATACCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATCCTTGGGACTCATTGTTCAACACAATGTGCCTGGAAAAGGTCCATTTGACAACATCTTGCAGCACATTTCAGACCCATGGCACAACACTATAGTTCAAACACTAAGGGGATAG

Protein sequence

MADGRCSELQQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHISDPWHNTIVQTLRG

Homology

[Close]

BLAST of MELO3C001992.1 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.4e-36
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLP  +VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN
Sbjct: 173 KQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDN 232

Query: 70  ILQHISDPWHNTIVQTLRG 89
           +LQHISDPWHNTIVQTL G
Sbjct: 233 LLQHISDPWHNTIVQTLGG 251

[Close]

BLAST of MELO3C001992.1 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-33
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLP  +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLA LG +VQHNV GKGPF+N
Sbjct: 174 KQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFEN 233

Query: 70  ILQHISDPWHNTIVQT 86
           +LQH+SDPWHNTIVQT
Sbjct: 234 LLQHLSDPWHNTIVQT 249

[Close]

BLAST of MELO3C001992.1 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-29
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           + YSLPP++ GYPG +FNPLNF P LE KEKE+ANGRLAMLA LG +VQHNV GKGPF+N
Sbjct: 153 KSYSLPPHECGYPGRVFNPLNFAP-LENKEKELANGRLAMLAFLGFLVQHNVHGKGPFEN 212

Query: 70  ILQHISDPWHNTIVQTLRG 89
           + QH++DPWHNTI+QT+ G
Sbjct: 213 LQQHLADPWHNTIIQTISG 230

[Close]

BLAST of MELO3C001992.1 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-14
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 20  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHI 79
           GYPGG + NPL     ++     K KEI NGRLAM+A LG  VQ +V   GP DN+++H+
Sbjct: 180 GYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHL 239

Query: 80  SDPWHNTIVQTL 87
           S+PWH TI+QTL
Sbjct: 240 SNPWHKTIIQTL 251

[Close]

BLAST of MELO3C001992.1 vs. ExPASy Swiss-Prot
Match: Q9SDM1 (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-13
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 16  PNDVGYPGGIFNPLNF--EPTL--EAKEKEIANGRLAMLASLGLIVQHNV-PGKGPFDNI 75
           P    YPGG F+PL F  +P    E K KEI NGRLAMLA +G  VQ +  PG GP +N+
Sbjct: 162 PEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENL 221

Query: 76  LQHISDPWHNTI 83
             H++DPWHN I
Sbjct: 222 ATHLADPWHNNI 233

[Close]

BLAST of MELO3C001992.1 vs. NCBI nr
Match: XP_038894825.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG IVQHNV GKGPFDN
Sbjct: 173 KQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDN 232

Query: 70  ILQHISDPWHNTIVQTLRG 89
            LQHISDPWHNTIVQTLRG
Sbjct: 233 FLQHISDPWHNTIVQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. NCBI nr
Match: XP_023524863.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN
Sbjct: 173 KQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDN 232

Query: 70  ILQHISDPWHNTIVQTLRG 89
            LQHISDPWHNTIVQTLRG
Sbjct: 233 FLQHISDPWHNTIVQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. NCBI nr
Match: XP_022949090.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN
Sbjct: 173 KQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDN 232

Query: 70  ILQHISDPWHNTIVQTLRG 89
            LQHISDPWHNTIVQTLRG
Sbjct: 233 FLQHISDPWHNTIVQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. NCBI nr
Match: XP_022998805.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 2.7e-36
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN
Sbjct: 173 KQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDN 232

Query: 70  ILQHISDPWHNTIVQTLRG 89
            LQHISDPWHNT+VQTLRG
Sbjct: 233 FLQHISDPWHNTVVQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. NCBI nr
Match: XP_022137160.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 12  YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNIL 71
           YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG IVQHNV GKGPFDN L
Sbjct: 175 YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFL 234

Query: 72  QHISDPWHNTIVQTLRG 89
           QHISDPWHNTI+QTLRG
Sbjct: 235 QHISDPWHNTIIQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. ExPASy TrEMBL
Match: A0A6J1GBT1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452545 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN
Sbjct: 173 KQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDN 232

Query: 70  ILQHISDPWHNTIVQTLRG 89
            LQHISDPWHNTIVQTLRG
Sbjct: 233 FLQHISDPWHNTIVQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. ExPASy TrEMBL
Match: A0A6J1KDI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493358 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG I+QHNV GKGPFDN
Sbjct: 173 KQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDN 232

Query: 70  ILQHISDPWHNTIVQTLRG 89
            LQHISDPWHNT+VQTLRG
Sbjct: 233 FLQHISDPWHNTVVQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. ExPASy TrEMBL
Match: A0A6J1C5V9 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008702 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.1e-36
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 12  YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNIL 71
           YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLA LG IVQHNV GKGPFDN L
Sbjct: 175 YSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFL 234

Query: 72  QHISDPWHNTIVQTLRG 89
           QHISDPWHNTI+QTLRG
Sbjct: 235 QHISDPWHNTIIQTLRG 251

[Close]

BLAST of MELO3C001992.1 vs. ExPASy TrEMBL
Match: A0A314YV68 (Chlorophyll a-b binding protein, chloroplastic OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16420 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-36
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPN+VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLA LGL+VQHNV GKGPFDN
Sbjct: 176 KQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGLLVQHNVTGKGPFDN 235

Query: 70  ILQHISDPWHNTIVQTLRG 89
           +LQH+SDPWHNTIVQTLRG
Sbjct: 236 LLQHLSDPWHNTIVQTLRG 254

[Close]

BLAST of MELO3C001992.1 vs. ExPASy TrEMBL
Match: M5WBL1 (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica OX=3760 GN=PRUPE_5G195100 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLPPN+VGYPGGIFNPLNF PTLEAKEKEIANGRLAMLA LG +VQHNV GKGPFDN
Sbjct: 176 KQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFVVQHNVTGKGPFDN 235

Query: 70  ILQHISDPWHNTIVQTLRG 89
           +LQH+SDPWHNTIVQTLRG
Sbjct: 236 LLQHLSDPWHNTIVQTLRG 254

[Close]

BLAST of MELO3C001992.1 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-34
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 10  QQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDN 69
           +QYSLP  +VGYPGGIFNPLNF PT EAKEKE+ANGRLAMLA LG +VQHNV GKGPF+N
Sbjct: 174 KQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFEN 233

Query: 70  ILQHISDPWHNTIVQT 86
           +LQH+SDPWHNTIVQT
Sbjct: 234 LLQHLSDPWHNTIVQT 249

[Close]

BLAST of MELO3C001992.1 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-16
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 20  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHI 79
           GYPGG + NPL     ++     K KEI NGRLAM+A LG  VQ +V   GP DN+++H+
Sbjct: 180 GYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHL 239

Query: 80  SDPWHNTIVQTL 87
           S+PWH TI+QTL
Sbjct: 240 SNPWHKTIIQTL 251

[Close]

BLAST of MELO3C001992.1 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 80.1 bits (196), Expect = 9.8e-16
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 20  GYPGG-IFNPLNFEPTLEA----KEKEIANGRLAMLASLGLIVQHNVPGKGPFDNILQHI 79
           GYPGG + NPL     ++     K KEI NGRLAM+A LG  VQ +V   GP DN+++H+
Sbjct: 180 GYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHL 239

Query: 80  SDPWHNTIVQTL 87
           S+PWH TI+QTL
Sbjct: 240 SNPWHKTIIQTL 251

[Close]

BLAST of MELO3C001992.1 vs. TAIR 10
Match: AT1G76570.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-14
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 16  PNDVGYPGG-IFNPLNF--EPTL--EAKEKEIANGRLAMLASLGLIVQHNVPGKGPFDNI 75
           P D+ YPGG +F+PLN   +P    + K KEI NGRLAM+A LG   Q    GKGP  N+
Sbjct: 250 PGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNL 309

Query: 76  LQHISDPWHNTIVQTLR 88
           + H+SDP HN ++  L+
Sbjct: 310 VDHVSDPLHNNLIAMLQ 326

[Close]

BLAST of MELO3C001992.1 vs. TAIR 10
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 73.6 bits (179), Expect = 9.2e-14
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 16  PNDVGYPGGIFNPLNF----EPTLEAKEKEIANGRLAMLASLGLIVQHNV-PGKGPFDNI 75
           P    YPGG F+PL +    +   E K KEI NGRLA+LA +G  VQ +  PG GP +N+
Sbjct: 162 PEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 221

Query: 76  LQHISDPWHNTI 83
             H++DPWHN I
Sbjct: 222 ATHLADPWHNNI 233

The following BLAST results are available for this feature:

BLAST of MELO3C001992.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQL2	6.4e-36	86.08	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	3.0e-33	81.58	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q36718	1.2e-29	70.89	Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulga...	[more]
Q9C639	1.4e-14	52.78	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
Q9SDM1	3.4e-13	52.78	Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 ...	[more]

BLAST of MELO3C001992.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894825.1	1.6e-36	93.67	chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida]	[more]
XP_023524863.1	2.1e-36	92.41	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita pepo subsp. pe...	[more]
XP_022949090.1	2.1e-36	92.41	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata]	[more]
XP_022998805.1	2.7e-36	91.14	chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima]	[more]
XP_022137160.1	1.0e-35	93.51	chlorophyll a-b binding protein P4, chloroplastic-like [Momordica charantia]	[more]

BLAST of MELO3C001992.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBT1	1.0e-36	92.41	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KDI3	1.3e-36	91.14	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1C5V9	5.1e-36	93.51	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A314YV68	6.6e-36	89.87	Chlorophyll a-b binding protein, chloroplastic OS=Prunus yedoensis var. nudiflor...	[more]
M5WBL1	1.5e-35	88.61	Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica OX=3760 GN=PRUP...	[more]

BLAST of MELO3C001992.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47470.1	2.1e-34	81.58	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	9.8e-16	52.78	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	9.8e-16	52.78	photosystem I light harvesting complex gene 5	[more]
AT1G76570.1	2.4e-14	48.05	Chlorophyll A-B binding family protein	[more]
AT3G54890.1	9.2e-14	48.61	photosystem I light harvesting complex gene 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 15..59 e-value: 1.3E-11 score: 45.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 3..88 e-value: 6.8E-25 score: 90.0
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 12..88
None	No IPR available	PANTHER	PTHR21649:SF109	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 12..88
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 15..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C001992	MELO3C001992	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C001992.1:exon:365429	MELO3C001992.1:exon:365429	exon
MELO3C001992.1:exon:365430	MELO3C001992.1:exon:365430	exon
MELO3C001992.1:exon:365431	MELO3C001992.1:exon:365431	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C001992.1:cds	MELO3C001992.1:cds	CDS
MELO3C001992.1:cds	MELO3C001992.1:cds_2	CDS
MELO3C001992.1:cds	MELO3C001992.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C001992.1	MELO3C001992.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane