MELO.jh031450.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031450.1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr07: 20853096 .. 20854241 (+)
Sequence length	454
RNA-Seq Expression	MELO.jh031450.1.t1
Synteny	MELO.jh031450.1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGTGAAAATGAAATCCAAATATTCTCTATTTTTATGTCTTCTACTTTTGTCTGTTTTAGTCCTCTCATGGGCTACACAAATCCACACAACTCAAGATGAGAAACAAGGTATCTAATCTAACACACACATATCTCTTTTCATTTTTTAGTGTTCAAGCTTTTTTAACATAACTTGCGAAATTTCCATGCATATTTTGCATGAAAACTAAGTAAAATTATTGTTCCCACTTGTGTTAAATCTTTTGAACACATCAAACTTTACCAAAAGATTTCGAGCCGTTTTGGGATAATTAATTGATCAACAACCAATAAAAAAGAATTTTTCTTTCATCATTTTTAAAATATCTTTTAAATTTTGTTATGTGTGATTATAATTAAAAGAAAACTACACGGTGTTTACACCTATTTTTAACAACAGAGGGAGCTATATCCAAATGAAAAACCTAGCACATACCAAAGGGACAGTAAAAAACTGTAACACGGCAGTTTTTATTCTTTTCAAAAAAATGATGTTTTGTTTAAAAAAAAGGTGATCCGACAGGTGCATCTACCTAATCATTCCTCTTATTAAAATTCGATGGAGAATATGTAAATAAAAAAAAAAAAGAAGATGGAGCCAAATATTGCACTTACTTAACAAATATATGATTGAGAAAGGTTCTGTGAATTCTGATGTGTAAAGGGGTGAGAGTAAGTGGTGTAAATGAAATCTTTGTGTGTATTTAGTTTCAGCAGAGGATGTAGCACATGTGGACAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCGCCTGGCTGGGGAGGCTTCGGTGGCGGCGGAGGCGGTCGTGCATGGAAAGGAGGTGGCGGGAAGGGCGGTGGTGGAAAAGGAGGCAGAAACTGAGATTATAGCAAATATGCAATATGATGTATGTTTTGAAGGGATAAAAGTATATGTGTGTATAATAATATAAGTATAAGTAACAAAGTTTGAATAATTCAGGAAGGAGAGTTGTTCCAATAAACTTTGAAGCTGTGGATTTCCCTCGTGAAGTATGTTTGTCATTGCCAACACTTTTTTGTCTCTTTTGTTGTGAGATATATTATCAGCCAGTGTAAAGAATAAATAAAATAATGGCATTATTCAATATTCCA

mRNA sequence

GGAAGTGAAAATGAAATCCAAATATTCTCTATTTTTATGTCTTCTACTTTTGTCTGTTTTAGTCCTCTCATGGGCTACACAAATCCACACAACTCAAGATGAGAAACAAGTTTCAGCAGAGGATGTAGCACATGTGGACAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCGCCTGGCTGGGGAGGCTTCGGTGGCGGCGGAGGCGGTCGTGCATGGAAAGGAGGTGGCGGGAAGGGCGGTGGTGGAAAAGGAGGCAGAAACTGAGATTATAGCAAATATGCAATATGATGAAGGAGAGTTGTTCCAATAAACTTTGAAGCTGTGGATTTCCCTCGTGAAGTATGTTTGTCATTGCCAACACTTTTTTGTCTCTTTTGTTGTGAGATATATTATCAGCCAGTGTAAAGAATAAATAAAATAATGGCATTATTCAATATTCCA

Coding sequence (CDS)

ATGAAATCCAAATATTCTCTATTTTTATGTCTTCTACTTTTGTCTGTTTTAGTCCTCTCATGGGCTACACAAATCCACACAACTCAAGATGAGAAACAAGTTTCAGCAGAGGATGTAGCACATGTGGACAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCGCCTGGCTGGGGAGGCTTCGGTGGCGGCGGAGGCGGTCGTGCATGGAAAGGAGGTGGCGGGAAGGGCGGTGGTGGAAAAGGAGGCAGAAACTGA

Protein sequence

MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPGWGGFGGGGGGRAWKGGGGKGGGGKGGRN

Homology

[Close]

BLAST of MELO.jh031450.1.t1 vs. NCBI nr
Match: XP_031740553.1 (acanthoscurrin-1-like [Cucumis sativus])

HSP 1 Score: 137 bits (345), Expect = 4.59e-40
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSKYSLF CLLLLSVLV+SWATQIHTTQDEKQVSA+DVAHVDNDG+ ED KYATGPPPG
Sbjct: 1  MKSKYSLFFCLLLLSVLVISWATQIHTTQDEKQVSAKDVAHVDNDGSYEDGKYATGPPPG 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGGGKGG 86
          WGGFGGGGGG  W+GGGGKGGGGKGG
Sbjct: 61 WGGFGGGGGGGVWRGGGGKGGGGKGG 86

[Close]

BLAST of MELO.jh031450.1.t1 vs. NCBI nr
Match: XP_022140565.1 (acanthoscurrin-2-like isoform X2 [Momordica charantia])

HSP 1 Score: 50.4 bits (119), Expect = 5.42e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

[Close]

BLAST of MELO.jh031450.1.t1 vs. NCBI nr
Match: XP_022140564.1 (acanthoscurrin-2-like isoform X1 [Momordica charantia])

HSP 1 Score: 50.4 bits (119), Expect = 6.29e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

[Close]

BLAST of MELO.jh031450.1.t1 vs. NCBI nr
Match: XP_023534315.1 (acanthoscurrin-2-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 47.4 bits (111), Expect = 9.58e-04
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSK  L +CLLL+S LV+SWA + HT++DE+QVS      V      E+ K+  G    
Sbjct: 1  MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEV------EEAKHGHGG--- 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGGGKGG 86
           GG+GGGG G   +GG G GGGG GG
Sbjct: 61 -GGYGGGGSGGGGQGGSGSGGGGHGG 76

[Close]

BLAST of MELO.jh031450.1.t1 vs. ExPASy TrEMBL
Match: A0A6J1CFD9 (acanthoscurrin-2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011190 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.62e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

[Close]

BLAST of MELO.jh031450.1.t1 vs. ExPASy TrEMBL
Match: A0A6J1CG15 (acanthoscurrin-2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011190 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.05e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

[Close]

BLAST of MELO.jh031450.1.t1 vs. ExPASy TrEMBL
Match: A0A6J1I5V7 (acanthoscurrin-2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 7.98e-04
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSK  L +CLLL+S LV+SWA + HT++DE+QVS      V      E+ K+  G    
Sbjct: 1  MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEV------EEAKHGHGG--- 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGG 82
           GG+GGGG G   +GG G GGG
Sbjct: 61 -GGYGGGGSGGGGQGGSGSGGG 72

[Close]

BLAST of MELO.jh031450.1.t1 vs. ExPASy TrEMBL
Match: A0A6J1I2D6 (acanthoscurrin-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 8.33e-04
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSK  L +CLLL+S LV+SWA + HT++DE+QVS      V      E+ K+  G    
Sbjct: 1  MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEV------EEAKHGHGG--- 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGG 82
           GG+GGGG G   +GG G GGG
Sbjct: 61 -GGYGGGGSGGGGQGGSGSGGG 72

The following BLAST results are available for this feature:

BLAST of MELO.jh031450.1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740553.1	4.59e-40	89.53	acanthoscurrin-1-like [Cucumis sativus]	[more]
XP_022140565.1	5.42e-05	71.43	acanthoscurrin-2-like isoform X2 [Momordica charantia]	[more]
XP_022140564.1	6.29e-05	71.43	acanthoscurrin-2-like isoform X1 [Momordica charantia]	[more]
XP_023534315.1	9.58e-04	48.84	acanthoscurrin-2-like isoform X3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO.jh031450.1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031450.1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFD9	2.62e-05	71.43	acanthoscurrin-2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011190 ...	[more]
A0A6J1CG15	3.05e-05	71.43	acanthoscurrin-2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011190 ...	[more]
A0A6J1I5V7	7.98e-04	47.56	acanthoscurrin-2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=...	[more]
A0A6J1I2D6	8.33e-04	47.56	acanthoscurrin-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=...	[more]

BLAST of MELO.jh031450.1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..85 e-value: 5.9E-11 score: 42.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..48

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO.jh031450.1	MELO.jh031450.1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO.jh031450.1.t1.exon	MELO.jh031450.1.t1.exon	exon
MELO.jh031450.1.t1.exon	MELO.jh031450.1.t1.exon_2	exon
MELO.jh031450.1.t1.exon	MELO.jh031450.1.t1.exon_3	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO.jh031450.1.t1.start_codon	MELO.jh031450.1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO.jh031450.1.t1.cds	MELO.jh031450.1.t1.cds	CDS
MELO.jh031450.1.t1.cds	MELO.jh031450.1.t1.cds_2	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO.jh031450.1.t1.stop_codon	MELO.jh031450.1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO.jh031450.1.t1	MELO.jh031450.1.t1-protein	polypeptide