MELO.jh031450.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh031450.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr07: 20853096 .. 20854241 (+)
RNA-Seq ExpressionMELO.jh031450.1
SyntenyMELO.jh031450.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGTGAAAATGAAATCCAAATATTCTCTATTTTTATGTCTTCTACTTTTGTCTGTTTTAGTCCTCTCATGGGCTACACAAATCCACACAACTCAAGATGAGAAACAAGGTATCTAATCTAACACACACATATCTCTTTTCATTTTTTAGTGTTCAAGCTTTTTTAACATAACTTGCGAAATTTCCATGCATATTTTGCATGAAAACTAAGTAAAATTATTGTTCCCACTTGTGTTAAATCTTTTGAACACATCAAACTTTACCAAAAGATTTCGAGCCGTTTTGGGATAATTAATTGATCAACAACCAATAAAAAAGAATTTTTCTTTCATCATTTTTAAAATATCTTTTAAATTTTGTTATGTGTGATTATAATTAAAAGAAAACTACACGGTGTTTACACCTATTTTTAACAACAGAGGGAGCTATATCCAAATGAAAAACCTAGCACATACCAAAGGGACAGTAAAAAACTGTAACACGGCAGTTTTTATTCTTTTCAAAAAAATGATGTTTTGTTTAAAAAAAAGGTGATCCGACAGGTGCATCTACCTAATCATTCCTCTTATTAAAATTCGATGGAGAATATGTAAATAAAAAAAAAAAAGAAGATGGAGCCAAATATTGCACTTACTTAACAAATATATGATTGAGAAAGGTTCTGTGAATTCTGATGTGTAAAGGGGTGAGAGTAAGTGGTGTAAATGAAATCTTTGTGTGTATTTAGTTTCAGCAGAGGATGTAGCACATGTGGACAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCGCCTGGCTGGGGAGGCTTCGGTGGCGGCGGAGGCGGTCGTGCATGGAAAGGAGGTGGCGGGAAGGGCGGTGGTGGAAAAGGAGGCAGAAACTGAGATTATAGCAAATATGCAATATGATGTATGTTTTGAAGGGATAAAAGTATATGTGTGTATAATAATATAAGTATAAGTAACAAAGTTTGAATAATTCAGGAAGGAGAGTTGTTCCAATAAACTTTGAAGCTGTGGATTTCCCTCGTGAAGTATGTTTGTCATTGCCAACACTTTTTTGTCTCTTTTGTTGTGAGATATATTATCAGCCAGTGTAAAGAATAAATAAAATAATGGCATTATTCAATATTCCA

mRNA sequence

GGAAGTGAAAATGAAATCCAAATATTCTCTATTTTTATGTCTTCTACTTTTGTCTGTTTTAGTCCTCTCATGGGCTACACAAATCCACACAACTCAAGATGAGAAACAAGTTTCAGCAGAGGATGTAGCACATGTGGACAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCGCCTGGCTGGGGAGGCTTCGGTGGCGGCGGAGGCGGTCGTGCATGGAAAGGAGGTGGCGGGAAGGGCGGTGGTGGAAAAGGAGGCAGAAACTGAGATTATAGCAAATATGCAATATGATGAAGGAGAGTTGTTCCAATAAACTTTGAAGCTGTGGATTTCCCTCGTGAAGTATGTTTGTCATTGCCAACACTTTTTTGTCTCTTTTGTTGTGAGATATATTATCAGCCAGTGTAAAGAATAAATAAAATAATGGCATTATTCAATATTCCA

Coding sequence (CDS)

ATGAAATCCAAATATTCTCTATTTTTATGTCTTCTACTTTTGTCTGTTTTAGTCCTCTCATGGGCTACACAAATCCACACAACTCAAGATGAGAAACAAGTTTCAGCAGAGGATGTAGCACATGTGGACAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCGCCTGGCTGGGGAGGCTTCGGTGGCGGCGGAGGCGGTCGTGCATGGAAAGGAGGTGGCGGGAAGGGCGGTGGTGGAAAAGGAGGCAGAAACTGA

Protein sequence

MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPGWGGFGGGGGGRAWKGGGGKGGGGKGGRN
Homology
BLAST of MELO.jh031450.1 vs. NCBI nr
Match: XP_031740553.1 (acanthoscurrin-1-like [Cucumis sativus])

HSP 1 Score: 137 bits (345), Expect = 4.59e-40
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSKYSLF CLLLLSVLV+SWATQIHTTQDEKQVSA+DVAHVDNDG+ ED KYATGPPPG
Sbjct: 1  MKSKYSLFFCLLLLSVLVISWATQIHTTQDEKQVSAKDVAHVDNDGSYEDGKYATGPPPG 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGGGKGG 86
          WGGFGGGGGG  W+GGGGKGGGGKGG
Sbjct: 61 WGGFGGGGGGGVWRGGGGKGGGGKGG 86

BLAST of MELO.jh031450.1 vs. NCBI nr
Match: XP_022140565.1 (acanthoscurrin-2-like isoform X2 [Momordica charantia])

HSP 1 Score: 50.4 bits (119), Expect = 5.42e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

BLAST of MELO.jh031450.1 vs. NCBI nr
Match: XP_022140564.1 (acanthoscurrin-2-like isoform X1 [Momordica charantia])

HSP 1 Score: 50.4 bits (119), Expect = 6.29e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

BLAST of MELO.jh031450.1 vs. NCBI nr
Match: XP_023534315.1 (acanthoscurrin-2-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 47.4 bits (111), Expect = 9.58e-04
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSK  L +CLLL+S LV+SWA + HT++DE+QVS      V      E+ K+  G    
Sbjct: 1  MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEV------EEAKHGHGG--- 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGGGKGG 86
           GG+GGGG G   +GG G GGGG GG
Sbjct: 61 -GGYGGGGSGGGGQGGSGSGGGGHGG 76

BLAST of MELO.jh031450.1 vs. ExPASy TrEMBL
Match: A0A6J1CFD9 (acanthoscurrin-2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011190 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.62e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

BLAST of MELO.jh031450.1 vs. ExPASy TrEMBL
Match: A0A6J1CG15 (acanthoscurrin-2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011190 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.05e-05
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVS 35
          MKSK  LFLCLLLLS LV+SWA + HTT+DEK+V+
Sbjct: 1  MKSKGFLFLCLLLLSALVISWAIESHTTKDEKEVN 35

BLAST of MELO.jh031450.1 vs. ExPASy TrEMBL
Match: A0A6J1I5V7 (acanthoscurrin-2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 7.98e-04
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSK  L +CLLL+S LV+SWA + HT++DE+QVS      V      E+ K+  G    
Sbjct: 1  MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEV------EEAKHGHGG--- 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGG 82
           GG+GGGG G   +GG G GGG
Sbjct: 61 -GGYGGGGSGGGGQGGSGSGGG 72

BLAST of MELO.jh031450.1 vs. ExPASy TrEMBL
Match: A0A6J1I2D6 (acanthoscurrin-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 8.33e-04
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 1  MKSKYSLFLCLLLLSVLVLSWATQIHTTQDEKQVSAEDVAHVDNDGTSEDQKYATGPPPG 60
          MKSK  L +CLLL+S LV+SWA + HT++DE+QVS      V      E+ K+  G    
Sbjct: 1  MKSKGFLLVCLLLVSALVVSWAIEAHTSEDEQQVSENVAQEV------EEAKHGHGG--- 60

Query: 61 WGGFGGGGGGRAWKGGGGKGGG 82
           GG+GGGG G   +GG G GGG
Sbjct: 61 -GGYGGGGSGGGGQGGSGSGGG 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031740553.14.59e-4089.53acanthoscurrin-1-like [Cucumis sativus][more]
XP_022140565.15.42e-0571.43acanthoscurrin-2-like isoform X2 [Momordica charantia][more]
XP_022140564.16.29e-0571.43acanthoscurrin-2-like isoform X1 [Momordica charantia][more]
XP_023534315.19.58e-0448.84acanthoscurrin-2-like isoform X3 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CFD92.62e-0571.43acanthoscurrin-2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011190 ... [more]
A0A6J1CG153.05e-0571.43acanthoscurrin-2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011190 ... [more]
A0A6J1I5V77.98e-0447.56acanthoscurrin-2-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=... [more]
A0A6J1I2D68.33e-0447.56acanthoscurrin-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469872 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 1..85
e-value: 5.9E-11
score: 42.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh031450.1.t1MELO.jh031450.1.t1mRNA