MC11g_new0223.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0223.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pentatricopeptide repeat-containing protein
Location	MC11: 9163901 .. 9165907 (-)
Sequence length	1017
RNA-Seq Expression	MC11g_new0223.1
Synteny	MC11g_new0223.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTGCGTCTGCTCCATATCTCCGCTCCACGTACCAGCCCTTCACCACAGAGCCTCTCCCACGCCCGATCTTCTCCACACCTTCAACTCCCCATTTGAGCTGAAGCAGGTCCACGCCCATCTCGTCAAAACCAATTCCCCCCTCTCTTCCCTCCCACTTTCACGGGTAGCCTCTGTTTGCGCGCTCAATTCGGGTTTCTCTTACGCCAAGTTGATATTCGAGCTCCTGGACGCACCGGAGGTCGCCCTGTGGAACACCTGTTTGAGAACTTTCGCCGAGGGAGATTCCCCTGCCGATGCTATTTCGCTTTTCTACCGGTTGCGCCAGTTTGACGTTTGCCCGGATGATTATTCTTGTTCGTTTGTTCTAAAAGCGTGTTCTAGATTATTGGATGTTGGAAATGGTAGAATTGTTCATGGGTATGTTGAGAAACTTGGGTTGCAATCGAATGTGTTCTTGCGGAATATGATTGTGAATTTGTATGCGTTGTGTGGCGAAATGGAAGTTGCCCGGATGGTGTTTGATAAAATGCCGCAGAGAGATGTGATAACGTGGAATATTATGATAGCCCAGTTGATTAAAAGAGCTGATGTCGAGGGGGCGTACAACTTGTTCGCTGAAATGCCTGAGAGGAGTGTGAGGTCGTGGACTTCAATGATTGCTGGCTATGCCCAATGTGGGAAGCCCAAGGAGGCCATTGATCTATTTCTCGAGATGGAAGAGGCTGGTTTGTTGCCCAACGAAGTAACAGTGGTGGCTGTCCTTGTAGCTTGTGCTGATCTGGGCAACTTGGATTTGGGGAGGAGGATACACGATTTTGCAAACCGGAATGGCTATGAGAGAAATGTTCGTGTTTGTAACACTCTGATTGATATGTATGTGAAATGTGGGTGCTTGGAGGATGCTCGTAGGATCTTCGACAACATGGAAGGATGTACAGTCGTTTCATGGTCGGCTATGATTGCAGGACTGGCAGCGCATGGACAGGCTGAGGATGCTCTTGTGTTTTTCACTAAAATGATAAACACAGGCATGAAGCCCAATGCAGTGACTTTCATTGGTATCTTGCATGCATGCAGCCATATGGGTATGGTAGAGAAAGGCCGTAAATATTTTGCTAGCATGACTAAGGATTATGGGATAGTTCCTAGGATTGAACACTATGGTTGTATGGTTGATCTTTTCAGCCGAGCAGGGCTGCTGCAAGAGGCTCACGAGTTCATCATGAACATGCCTATTGAGCCAAATGGTGTTGTTTGGGGAGCCCTCCTTGGTGGTTGCAAAGTTCACAAGAACTTAAAACTGGCTGAAGAAGCCATCCGTCACCTCTCCAAATTGGATCCATTAAATGATGGATACTATGTGGTCCTATCGAACATTTATGCGGAAGCAGGGAGATGGGAGGATGTGGCGCGAGTGAGAAAGTTAATGAGAGATAGAGGAGTAAAAAAGACACCTGGCTGGAGTTCAATCGTGGTGGAAGGAATGGTTCATAATTTTGTAGCAGGGGATGAGACTCATCCTCAAGCTGAGGAGATATTCAAAACATGGGAGAAGTTGCTCGAGCGAATGAAGATCAAAGGATATGTGCCCAACACCTCGGTGGTAATGCTTGACATGGAAGAGGATGAGAAGGAAAGGTTTTTGTATCGACATAGTGAGAAGTTAGCAGTAGCGTTCGGATTAATCAAAACCGCACCTGGAACTGTTATTAGGATCATGAAGAATCTCCGTGTTTGTGAGGATTGCCACACTGCTTTGAAGATCATATCGGTTGTTAGTACCAGAGAGATAGTTGTTCGTGATAGAAACCGATTCCATTGTTTCAAAAACGGTTCGTGTTCTTGTGCTGATTACTGGTAGTTGTAGTTGAGATGGAATGCTGATTTGTATATTTGAGAAACTGATAATTTTGATTCATCAGTTACAATCTTTGGTATTGAAATATCCCCACTTTTGAGTTCAATTGAGCTTGAGCAAGATAGAAGGAAATTAGGAAGATAA

mRNA sequence

ATGCTCTGCGTCTGCTCCATATCTCCGCTCCACGTACCAGCCCTTCACCACAGAGCCTCTCCCACGCCCGATCTTCTCCACACCTTCAACTCCCCATTTGAGCTGAAGCAGGTCCACGCCCATCTCGTCAAAACCAATTCCCCCCTCTCTTCCCTCCCACTTTCACGGGTAGCCTCTGTTTGCGCGCTCAATTCGGGTTTCTCTTACGCCAAGTTGATATTCGAGCTCCTGGACGCACCGGAGGTCGCCCTGTGGAACACCTGTTTGAGAACTTTCGCCGAGGGAGATTCCCCTGCCGATGCTATTTCGCTTTTCTACCGGTTGCGCCAGTTTGACGTTTGCCCGGATGATTATTCTTGTTCGTTTGTTCTAAAAGCGTGTTCTAGATTATTGGATGTTGGAAATGGTAGAATTGTTCATGGGTATGTTGAGAAACTTGGGTTGCAATCGAATGTGTTCTTGCGGAATATGATTGTGAATTTGTATGCGTTGTGTGGCGAAATGGAAGTTGCCCGGATGGTGTTTGATAAAATGCCGCAGAGAGATGTGATAACGTGGAATATTATGATAGCCCAGTTGATTAAAAGAGCTGATGTCGAGGGGGCGTACAACTTGTTCGCTGAAATGCCTGAGAGGAGTGTGAGGTCGTGGACTTCAATGATTGCTGGCTATGCCCAATGTGGGAAGCCCAAGGAGGCCATTGATCTATTTCTCGAGATGGAAGAGGCTGGTTTGTTGCCCAACGAAGTAACAGTGGTGGCTGTCCTTGTAGCTTGTGCTGATCTGGGCAACTTGGATTTGGGGAGGAGGATACACGATTTTGCAAACCGGAATGGCTATGAGAGAAATGTTCGTGTTTGTAACACTCTGATTGATATGTATGTGAAATGTGGGTGCTTGGAGGATGCTCGTAGGATCTTCGACAACATGGAAGGATTTACAATCTTTGGTATTGAAATATCCCCACTTTTGAGTTCAATTGAGCTTGAGCAAGATAGAAGGAAATTAGGAAGATAA

Coding sequence (CDS)

ATGCTCTGCGTCTGCTCCATATCTCCGCTCCACGTACCAGCCCTTCACCACAGAGCCTCTCCCACGCCCGATCTTCTCCACACCTTCAACTCCCCATTTGAGCTGAAGCAGGTCCACGCCCATCTCGTCAAAACCAATTCCCCCCTCTCTTCCCTCCCACTTTCACGGGTAGCCTCTGTTTGCGCGCTCAATTCGGGTTTCTCTTACGCCAAGTTGATATTCGAGCTCCTGGACGCACCGGAGGTCGCCCTGTGGAACACCTGTTTGAGAACTTTCGCCGAGGGAGATTCCCCTGCCGATGCTATTTCGCTTTTCTACCGGTTGCGCCAGTTTGACGTTTGCCCGGATGATTATTCTTGTTCGTTTGTTCTAAAAGCGTGTTCTAGATTATTGGATGTTGGAAATGGTAGAATTGTTCATGGGTATGTTGAGAAACTTGGGTTGCAATCGAATGTGTTCTTGCGGAATATGATTGTGAATTTGTATGCGTTGTGTGGCGAAATGGAAGTTGCCCGGATGGTGTTTGATAAAATGCCGCAGAGAGATGTGATAACGTGGAATATTATGATAGCCCAGTTGATTAAAAGAGCTGATGTCGAGGGGGCGTACAACTTGTTCGCTGAAATGCCTGAGAGGAGTGTGAGGTCGTGGACTTCAATGATTGCTGGCTATGCCCAATGTGGGAAGCCCAAGGAGGCCATTGATCTATTTCTCGAGATGGAAGAGGCTGGTTTGTTGCCCAACGAAGTAACAGTGGTGGCTGTCCTTGTAGCTTGTGCTGATCTGGGCAACTTGGATTTGGGGAGGAGGATACACGATTTTGCAAACCGGAATGGCTATGAGAGAAATGTTCGTGTTTGTAACACTCTGATTGATATGTATGTGAAATGTGGGTGCTTGGAGGATGCTCGTAGGATCTTCGACAACATGGAAGGATTTACAATCTTTGGTATTGAAATATCCCCACTTTTGAGTTCAATTGAGCTTGAGCAAGATAGAAGGAAATTAGGAAGATAA

Protein sequence

MLCVCSISPLHVPALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSCSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCLEDARRIFDNMEGFTIFGIEISPLLSSIELEQDRRKLGR

Homology

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BLAST of MC11g_new0223.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.4e-53
Identity = 102/296 (34.46%), Postives = 173/296 (58.45%), Query Frame = 0


Query: 18  RASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALN---SGFSYAKLIF 77
           R  P+  LLH   +   L+ +HA ++K     ++  LS++   C L+    G  YA  +F
Sbjct: 32  RNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVF 91

Query: 78  ELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSCSFVLKACSRLLDVG 137
           + +  P + +WNT  R  A    P  A+ L+  +    + P+ Y+  FVLK+C++     
Sbjct: 92  KTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFK 151

Query: 138 NGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMIAQLI 197
            G+ +HG+V KLG   ++++   ++++Y   G +E A  VFDK P RDV+++  +I    
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211

Query: 198 KRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEVTVVA 257
            R  +E A  LF E+P + V SW +MI+GYA+ G  KEA++LF +M +  + P+E T+V 
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271

Query: 258 VLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCLEDARRIFDNM 311
           V+ ACA  G+++LGR++H + + +G+  N+++ N LID+Y KCG LE A  +F+ +
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL 327

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy Swiss-Prot
Match: Q38959 (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.2e-52
Identity = 107/292 (36.64%), Postives = 168/292 (57.53%), Query Frame = 0


Query: 26  LHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALNSGFSYAKLIFELLDAPEVALW 85
           L T ++  +LKQ+H  ++K N     L + ++ SV +      YA L+F  L +P    W
Sbjct: 27  LRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTW 86

Query: 86  NTCLRTFAEGDSPADAISLFYRL-----RQFDVCPDDYSCSFVLKACSRLLDVGNGRIVH 145
           N  +R+ +    P +A+ LF  +      QF    D ++  FV+KAC     +  G  VH
Sbjct: 87  NLMIRSLSVNHKPREALLLFILMMISHQSQF----DKFTFPFVIKACLASSSIRLGTQVH 146

Query: 146 GYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMIAQLIKRADVE 205
           G   K G  ++VF +N +++LY  CG+ +  R VFDKMP R +++W  M+  L+  + ++
Sbjct: 147 GLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLD 206

Query: 206 GAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEVTVVAVLVACA 265
            A  +F +MP R+V SWT+MI  Y +  +P EA  LF  M+   + PNE T+V +L A  
Sbjct: 207 SAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAST 266

Query: 266 DLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCLEDARRIFDNMEG 313
            LG+L +GR +HD+A++NG+  +  +   LIDMY KCG L+DAR++FD M+G
Sbjct: 267 QLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQG 314

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BLAST of MC11g_new0223.1 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 7.8e-50
Identity = 121/313 (38.66%), Postives = 178/313 (56.87%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPF-ELKQVHAHLVKTNSPLSSLPLSRV- 63
           + S S + VPA+    S + +    L+ T  S   ELKQ+HA L+KT     ++  SRV 
Sbjct: 5   ILSFSGVTVPAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVL 64

Query: 64  ASVCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRL--RQFDVCP 123
           A  CA  S  +YA L+F  ++     +WNT +R F+    P  AIS+F  +      V P
Sbjct: 65  AFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKP 124

Query: 124 DDYSCSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVF 183
              +   V KA  RL    +GR +HG V K GL+ + F+RN ++++Y  CG +  A  +F
Sbjct: 125 QRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF 184

Query: 184 DKMPQRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAID 243
             M   DV+ WN MI    K   ++ A NLF EMP+R+  SW SMI+G+ + G+ K+A+D
Sbjct: 185 LGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALD 244

Query: 244 LFLEMEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYV 303
           +F EM+E  + P+  T+V++L ACA LG  + GR IH++  RN +E N  V   LIDMY 
Sbjct: 245 MFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYC 304

Query: 304 KCGCLEDARRIFD 309
           KCGC+E+   +F+
Sbjct: 305 KCGCIEEGLNVFE 317

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.3e-49
Identity = 100/301 (33.22%), Postives = 169/301 (56.15%), Query Frame = 0


Query: 14  ALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALNSG---FSYA 73
           +L H    T   L   +   ELKQ+HA ++KT     S  +++  S C  ++      YA
Sbjct: 9   SLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYA 68

Query: 74  KLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSCSFVLKACSRL 133
           +++F+  D P+  LWN  +R F+  D P  ++ L+ R+       + Y+   +LKACS L
Sbjct: 69  QIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNL 128

Query: 134 LDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMI 193
                   +H  + KLG +++V+  N ++N YA+ G  ++A ++FD++P+ D ++WN +I
Sbjct: 129 SAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVI 188

Query: 194 AQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEV 253
              +K   ++ A  LF +M E++  SWT+MI+GY Q    KEA+ LF EM+ + + P+ V
Sbjct: 189 KGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNV 248

Query: 254 TVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCLEDARRIFDNM 312
           ++   L ACA LG L+ G+ IH + N+     +  +   LIDMY KCG +E+A  +F N+
Sbjct: 249 SLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNI 308

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy Swiss-Prot
Match: O80488 (Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E70 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.9e-49
Identity = 107/288 (37.15%), Postives = 165/288 (57.29%), Query Frame = 0


Query: 25  LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALNSGFSYAKLIFELLDAPEVAL 84
           LLH  N+   L ++HAHL++     S+L L+   S+C   S   YA  +F  +  P V +
Sbjct: 10  LLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLV 69

Query: 85  WNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSCSFVLKACSRLLDVGNGRIVHGYVE 144
           +N  ++ ++    P +++S F  ++   +  D+Y+ + +LK+CS L D+  G+ VHG + 
Sbjct: 70  FNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELI 129

Query: 145 KLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMIAQLIKRADVEGAYN 204
           + G      +R  +V LY   G M  A+ VFD+M +R+V+ WN+MI       DVE   +
Sbjct: 130 RTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLH 189

Query: 205 LFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEVTVVAVLVACADLGN 264
           LF +M ERS+ SW SMI+  ++CG+ +EA++LF EM + G  P+E TVV VL   A LG 
Sbjct: 190 LFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGV 249

Query: 265 LDLGRRIHDFANRNG-YERNVRVCNTLIDMYVKCGCLEDARRIFDNME 312
           LD G+ IH  A  +G ++  + V N L+D Y K G LE A  IF  M+
Sbjct: 250 LDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQ 297

[Close]

BLAST of MC11g_new0223.1 vs. NCBI nr
Match: XP_022139353.1 (pentatricopeptide repeat-containing protein At5g66520-like [Momordica charantia])

HSP 1 Score: 640 bits (1651), Expect = 2.18e-226
Identity = 313/315 (99.37%), Postives = 314/315 (99.68%), Query Frame = 0


Query: 1   MLCVCSISPLHVPALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASV 60
           MLCVCSISPLHVPALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASV
Sbjct: 10  MLCVCSISPLHVPALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASV 69

Query: 61  CALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSC 120
           CALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSC
Sbjct: 70  CALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSC 129

Query: 121 SFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQ 180
           SFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQ
Sbjct: 130 SFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQ 189

Query: 181 RDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEM 240
           RDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEM
Sbjct: 190 RDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEM 249

Query: 241 EEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCL 300
           EEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCL
Sbjct: 250 EEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCL 309

Query: 301 EDARRIFDNMEGFTI 315
           EDARRIFDNMEG T+
Sbjct: 310 EDARRIFDNMEGCTV 324

[Close]

BLAST of MC11g_new0223.1 vs. NCBI nr
Match: XP_038897525.1 (pentatricopeptide repeat-containing protein At5g66520-like [Benincasa hispida])

HSP 1 Score: 556 bits (1434), Expect = 1.50e-193
Identity = 269/316 (85.13%), Postives = 293/316 (92.72%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHVP LHHRAS TP+    LLH F SPFELKQVHAHL+KTNSPLSSLPLSRVAS
Sbjct: 2   ICSLSLLHVPPLHHRASSTPNPMTHLLHNFTSPFELKQVHAHLLKTNSPLSSLPLSRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           VCALNS FSYAKLIF+LLDA EVALWNTCLR+FAEGDSP DAISLFYRLR+FD+CPD+Y+
Sbjct: 62  VCALNSSFSYAKLIFDLLDASEVALWNTCLRSFAEGDSPVDAISLFYRLREFDICPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLDV NGR+VHGYVEKLGLQSN+FL+NMIV+LYALCGEM VAR VFDKMP
Sbjct: 122 CSFVLKACSRLLDVRNGRVVHGYVEKLGLQSNMFLQNMIVHLYALCGEMGVARKVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIAQL+K+ D EGAY LFAEMPER+VRSWTSMI GYAQCGKPKEAIDLFL+
Sbjct: 182 QRDVITWNIMIAQLVKKGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKPKEAIDLFLK 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           MEEAGLLPNEVTVVAVLVACAD+GNL LGRRIHDF+NR+GYE+N+RVCNTLIDMYVKCGC
Sbjct: 242 MEEAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           LEDA RIFDNME  T+
Sbjct: 302 LEDACRIFDNMEERTV 317

[Close]

BLAST of MC11g_new0223.1 vs. NCBI nr
Match: KAG7037315.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 549 bits (1414), Expect = 1.57e-190
Identity = 265/316 (83.86%), Postives = 290/316 (91.77%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHVP L HRASPTP+    LLH F+SPFELKQVHAHL+KTNSPLSS+PL RVAS
Sbjct: 2   ICSVSLLHVPPLPHRASPTPNPITHLLHNFSSPFELKQVHAHLLKTNSPLSSIPLLRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           VCALNS FSYAKLIFEL+DA EVALWNTCLR+ AEGDSP DAISLFYRLR+FDVCPD+Y+
Sbjct: 62  VCALNSSFSYAKLIFELVDASEVALWNTCLRSLAEGDSPVDAISLFYRLREFDVCPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLDV NGRIVHGYVEKLGLQSN+FL NMIV+LYALCGEM VARMVFDKMP
Sbjct: 122 CSFVLKACSRLLDVRNGRIVHGYVEKLGLQSNMFLLNMIVHLYALCGEMGVARMVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIAQL+KR D+EGAY LF EMPER+VRSWTSMI GYAQCGKPKEA+DLFLE
Sbjct: 182 QRDVITWNIMIAQLVKRGDIEGAYKLFVEMPERNVRSWTSMIGGYAQCGKPKEAVDLFLE 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           MEEAGLLPNEVTVVAVLVACAD+GNLDLGRRIHDF+NR GY +N+RVCNTLIDMY KCGC
Sbjct: 242 MEEAGLLPNEVTVVAVLVACADMGNLDLGRRIHDFSNRIGYHKNIRVCNTLIDMYAKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           L+DA RIF++ME  T+
Sbjct: 302 LDDAYRIFNDMEERTV 317

[Close]

BLAST of MC11g_new0223.1 vs. NCBI nr
Match: XP_022940221.1 (pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita moschata])

HSP 1 Score: 549 bits (1414), Expect = 1.62e-190
Identity = 265/316 (83.86%), Postives = 290/316 (91.77%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHVP L HRASPTP+    LLH F+SPFELKQVHAHL+KTNSPLSS+PL RVAS
Sbjct: 2   ICSVSLLHVPPLPHRASPTPNPITHLLHNFSSPFELKQVHAHLLKTNSPLSSIPLLRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           VCALNS FSYAKLIFEL+DA EVALWNTCLR+ AEGDSP DAISLFYRLR+FDVCPD+Y+
Sbjct: 62  VCALNSSFSYAKLIFELVDASEVALWNTCLRSLAEGDSPVDAISLFYRLREFDVCPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLDV NGRIVHGYVEKLGLQSN+FL NMIV+LYALCGEM VARMVFDKMP
Sbjct: 122 CSFVLKACSRLLDVRNGRIVHGYVEKLGLQSNMFLLNMIVHLYALCGEMGVARMVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIAQL+KR D+EGAY LF EMPER+VRSWTSMI GYAQCGKPKEA+DLFLE
Sbjct: 182 QRDVITWNIMIAQLVKRGDIEGAYKLFVEMPERNVRSWTSMIGGYAQCGKPKEAVDLFLE 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           MEEAGLLPNEVTVVAVLVACAD+GNLDLGRRIHDF+NR GY +N+RVCNTLIDMY KCGC
Sbjct: 242 MEEAGLLPNEVTVVAVLVACADMGNLDLGRRIHDFSNRIGYHKNIRVCNTLIDMYAKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           L+DA RIF++ME  T+
Sbjct: 302 LDDAYRIFNDMEERTV 317

[Close]

BLAST of MC11g_new0223.1 vs. NCBI nr
Match: KAG6607740.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 547 bits (1410), Expect = 6.55e-190
Identity = 264/316 (83.54%), Postives = 290/316 (91.77%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHVP L  RASPTP+    LLH F+SPFELKQVHAHL+KTNSPLSS+PLSRVAS
Sbjct: 2   ICSVSLLHVPPLPQRASPTPNPITHLLHNFSSPFELKQVHAHLLKTNSPLSSVPLSRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           +CALNS FSYAKLIFEL+DA EVALWNTCLR+ AEGDSP DAISLFYRLR+FDVCPD+Y+
Sbjct: 62  ICALNSSFSYAKLIFELVDASEVALWNTCLRSLAEGDSPVDAISLFYRLREFDVCPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLDV NGRIVHGYVEKLGLQSN+FL NMIV+LYALCGEM VARMVFDKMP
Sbjct: 122 CSFVLKACSRLLDVRNGRIVHGYVEKLGLQSNMFLLNMIVHLYALCGEMGVARMVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIAQL+KR D+EGAY LF EMPER+VRSWTSMI GYAQCGKPKEA+DLFLE
Sbjct: 182 QRDVITWNIMIAQLVKRGDIEGAYKLFVEMPERNVRSWTSMIGGYAQCGKPKEAVDLFLE 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           MEEAGLLPNEVTVVAVLVACAD+GNLDLGRRIHDF+NR GY +N+RVCNTLIDMY KCGC
Sbjct: 242 MEEAGLLPNEVTVVAVLVACADMGNLDLGRRIHDFSNRIGYHKNIRVCNTLIDMYAKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           L+DA RIF++ME  T+
Sbjct: 302 LDDAYRIFNDMEERTV 317

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy TrEMBL
Match: A0A6J1CFF1 (pentatricopeptide repeat-containing protein At5g66520-like OS=Momordica charantia OX=3673 GN=LOC111010302 PE=3 SV=1)

HSP 1 Score: 640 bits (1651), Expect = 1.06e-226
Identity = 313/315 (99.37%), Postives = 314/315 (99.68%), Query Frame = 0


Query: 1   MLCVCSISPLHVPALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASV 60
           MLCVCSISPLHVPALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASV
Sbjct: 10  MLCVCSISPLHVPALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASV 69

Query: 61  CALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSC 120
           CALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSC
Sbjct: 70  CALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSC 129

Query: 121 SFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQ 180
           SFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQ
Sbjct: 130 SFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQ 189

Query: 181 RDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEM 240
           RDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEM
Sbjct: 190 RDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEM 249

Query: 241 EEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCL 300
           EEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCL
Sbjct: 250 EEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCL 309

Query: 301 EDARRIFDNMEGFTI 315
           EDARRIFDNMEG T+
Sbjct: 310 EDARRIFDNMEGCTV 324

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy TrEMBL
Match: A0A6J1FHW1 (pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita moschata OX=3662 GN=LOC111445907 PE=3 SV=1)

HSP 1 Score: 549 bits (1414), Expect = 7.85e-191
Identity = 265/316 (83.86%), Postives = 290/316 (91.77%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHVP L HRASPTP+    LLH F+SPFELKQVHAHL+KTNSPLSS+PL RVAS
Sbjct: 2   ICSVSLLHVPPLPHRASPTPNPITHLLHNFSSPFELKQVHAHLLKTNSPLSSIPLLRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           VCALNS FSYAKLIFEL+DA EVALWNTCLR+ AEGDSP DAISLFYRLR+FDVCPD+Y+
Sbjct: 62  VCALNSSFSYAKLIFELVDASEVALWNTCLRSLAEGDSPVDAISLFYRLREFDVCPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLDV NGRIVHGYVEKLGLQSN+FL NMIV+LYALCGEM VARMVFDKMP
Sbjct: 122 CSFVLKACSRLLDVRNGRIVHGYVEKLGLQSNMFLLNMIVHLYALCGEMGVARMVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIAQL+KR D+EGAY LF EMPER+VRSWTSMI GYAQCGKPKEA+DLFLE
Sbjct: 182 QRDVITWNIMIAQLVKRGDIEGAYKLFVEMPERNVRSWTSMIGGYAQCGKPKEAVDLFLE 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           MEEAGLLPNEVTVVAVLVACAD+GNLDLGRRIHDF+NR GY +N+RVCNTLIDMY KCGC
Sbjct: 242 MEEAGLLPNEVTVVAVLVACADMGNLDLGRRIHDFSNRIGYHKNIRVCNTLIDMYAKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           L+DA RIF++ME  T+
Sbjct: 302 LDDAYRIFNDMEERTV 317

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy TrEMBL
Match: A0A6J1IWH8 (pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita maxima OX=3661 GN=LOC111480545 PE=3 SV=1)

HSP 1 Score: 545 bits (1404), Expect = 2.58e-189
Identity = 264/316 (83.54%), Postives = 289/316 (91.46%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHVP L  RASPTP+    LLH F+SPFELKQVHAHL+KTNSPLSSLPLSRVAS
Sbjct: 2   ICSVSLLHVPPLPQRASPTPNPITHLLHNFSSPFELKQVHAHLLKTNSPLSSLPLSRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           +CALNS FSYAKLIFEL+DA EVALWNTCLR+FAEGDSP DAISLFYRLR+FDVCPD+Y+
Sbjct: 62  ICALNSSFSYAKLIFELVDASEVALWNTCLRSFAEGDSPVDAISLFYRLREFDVCPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLDV NGRIVHGYVEKLGLQSN+FL NMIV+LYALCGEM VARMVFDKMP
Sbjct: 122 CSFVLKACSRLLDVRNGRIVHGYVEKLGLQSNMFLLNMIVHLYALCGEMGVARMVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIAQL+KR D+ GAY LF EMPER+VRSWTSMI GYAQCGK KEA+DLFLE
Sbjct: 182 QRDVITWNIMIAQLVKRGDIVGAYKLFVEMPERNVRSWTSMIGGYAQCGKSKEAVDLFLE 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           MEEAGLLPNEVTVVAVLVACAD+GNLDLGRRIHDF+NR GY +N+RVCNTLIDMY KCGC
Sbjct: 242 MEEAGLLPNEVTVVAVLVACADMGNLDLGRRIHDFSNRIGYHKNIRVCNTLIDMYAKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           L+DA RIF++ME  T+
Sbjct: 302 LDDAYRIFNDMEERTV 317

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy TrEMBL
Match: A0A5D3CCF9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001400 PE=3 SV=1)

HSP 1 Score: 540 bits (1392), Expect = 1.70e-187
Identity = 262/316 (82.91%), Postives = 287/316 (90.82%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHV  LHHR SPTP+    LLH F SPFELKQVHAHL+KTNSPLSSLPLSRVAS
Sbjct: 2   ICSLSLLHVSPLHHRPSPTPNPSTHLLHNFTSPFELKQVHAHLLKTNSPLSSLPLSRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           VCA NS FSYAKLIFEL+DA EV  WNTCLR+FAEGDSPADAISLFYRLR+FD+CPD+Y+
Sbjct: 62  VCAFNSSFSYAKLIFELVDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDICPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLD+ NG+IVHGYVEKLGLQSN+FL+NMIV+LYA CGE+ VAR VFDKMP
Sbjct: 122 CSFVLKACSRLLDIRNGKIVHGYVEKLGLQSNMFLQNMIVHLYASCGEIGVARKVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIA+L+K  D EGAY LFAEMPER+VRSWTSMI GYAQCGK KEAIDLFLE
Sbjct: 182 QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLE 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           ME+AGLLPNEVTVVAVLVACAD+GNL LGRRIHDF+NR+GYE+N+RVCNTLIDMYVKCGC
Sbjct: 242 MEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           LEDA RIFDNME  TI
Sbjct: 302 LEDACRIFDNMEERTI 317

[Close]

BLAST of MC11g_new0223.1 vs. ExPASy TrEMBL
Match: A0A1S3CI89 (pentatricopeptide repeat-containing protein At5g66520-like OS=Cucumis melo OX=3656 GN=LOC103501262 PE=3 SV=1)

HSP 1 Score: 540 bits (1392), Expect = 1.70e-187
Identity = 262/316 (82.91%), Postives = 287/316 (90.82%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVAS 63
           +CS+S LHV  LHHR SPTP+    LLH F SPFELKQVHAHL+KTNSPLSSLPLSRVAS
Sbjct: 2   ICSLSLLHVSPLHHRPSPTPNPSTHLLHNFTSPFELKQVHAHLLKTNSPLSSLPLSRVAS 61

Query: 64  VCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYS 123
           VCA NS FSYAKLIFEL+DA EV  WNTCLR+FAEGDSPADAISLFYRLR+FD+CPD+Y+
Sbjct: 62  VCAFNSSFSYAKLIFELVDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDICPDNYT 121

Query: 124 CSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMP 183
           CSFVLKACSRLLD+ NG+IVHGYVEKLGLQSN+FL+NMIV+LYA CGE+ VAR VFDKMP
Sbjct: 122 CSFVLKACSRLLDIRNGKIVHGYVEKLGLQSNMFLQNMIVHLYASCGEIGVARKVFDKMP 181

Query: 184 QRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLE 243
           QRDVITWNIMIA+L+K  D EGAY LFAEMPER+VRSWTSMI GYAQCGK KEAIDLFLE
Sbjct: 182 QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLE 241

Query: 244 MEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGC 303
           ME+AGLLPNEVTVVAVLVACAD+GNL LGRRIHDF+NR+GYE+N+RVCNTLIDMYVKCGC
Sbjct: 242 MEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGC 301

Query: 304 LEDARRIFDNMEGFTI 315
           LEDA RIFDNME  TI
Sbjct: 302 LEDACRIFDNMEERTI 317

[Close]

BLAST of MC11g_new0223.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 2.4e-54
Identity = 102/296 (34.46%), Postives = 173/296 (58.45%), Query Frame = 0


Query: 18  RASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALN---SGFSYAKLIF 77
           R  P+  LLH   +   L+ +HA ++K     ++  LS++   C L+    G  YA  +F
Sbjct: 32  RNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVF 91

Query: 78  ELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSCSFVLKACSRLLDVG 137
           + +  P + +WNT  R  A    P  A+ L+  +    + P+ Y+  FVLK+C++     
Sbjct: 92  KTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFK 151

Query: 138 NGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMIAQLI 197
            G+ +HG+V KLG   ++++   ++++Y   G +E A  VFDK P RDV+++  +I    
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211

Query: 198 KRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEVTVVA 257
            R  +E A  LF E+P + V SW +MI+GYA+ G  KEA++LF +M +  + P+E T+V 
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271

Query: 258 VLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCLEDARRIFDNM 311
           V+ ACA  G+++LGR++H + + +G+  N+++ N LID+Y KCG LE A  +F+ +
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL 327

[Close]

BLAST of MC11g_new0223.1 vs. TAIR 10
Match: AT3G26630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-53
Identity = 107/292 (36.64%), Postives = 168/292 (57.53%), Query Frame = 0


Query: 26  LHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALNSGFSYAKLIFELLDAPEVALW 85
           L T ++  +LKQ+H  ++K N     L + ++ SV +      YA L+F  L +P    W
Sbjct: 27  LRTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTW 86

Query: 86  NTCLRTFAEGDSPADAISLFYRL-----RQFDVCPDDYSCSFVLKACSRLLDVGNGRIVH 145
           N  +R+ +    P +A+ LF  +      QF    D ++  FV+KAC     +  G  VH
Sbjct: 87  NLMIRSLSVNHKPREALLLFILMMISHQSQF----DKFTFPFVIKACLASSSIRLGTQVH 146

Query: 146 GYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMIAQLIKRADVE 205
           G   K G  ++VF +N +++LY  CG+ +  R VFDKMP R +++W  M+  L+  + ++
Sbjct: 147 GLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLD 206

Query: 206 GAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEVTVVAVLVACA 265
            A  +F +MP R+V SWT+MI  Y +  +P EA  LF  M+   + PNE T+V +L A  
Sbjct: 207 SAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAST 266

Query: 266 DLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCLEDARRIFDNMEG 313
            LG+L +GR +HD+A++NG+  +  +   LIDMY KCG L+DAR++FD M+G
Sbjct: 267 QLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQG 314

[Close]

BLAST of MC11g_new0223.1 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 199.1 bits (505), Expect = 5.6e-51
Identity = 121/313 (38.66%), Postives = 178/313 (56.87%), Query Frame = 0


Query: 4   VCSISPLHVPALHHRASPTPD----LLHTFNSPF-ELKQVHAHLVKTNSPLSSLPLSRV- 63
           + S S + VPA+    S + +    L+ T  S   ELKQ+HA L+KT     ++  SRV 
Sbjct: 5   ILSFSGVTVPAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVL 64

Query: 64  ASVCALNSGFSYAKLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRL--RQFDVCP 123
           A  CA  S  +YA L+F  ++     +WNT +R F+    P  AIS+F  +      V P
Sbjct: 65  AFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKP 124

Query: 124 DDYSCSFVLKACSRLLDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVF 183
              +   V KA  RL    +GR +HG V K GL+ + F+RN ++++Y  CG +  A  +F
Sbjct: 125 QRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF 184

Query: 184 DKMPQRDVITWNIMIAQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAID 243
             M   DV+ WN MI    K   ++ A NLF EMP+R+  SW SMI+G+ + G+ K+A+D
Sbjct: 185 LGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALD 244

Query: 244 LFLEMEEAGLLPNEVTVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYV 303
           +F EM+E  + P+  T+V++L ACA LG  + GR IH++  RN +E N  V   LIDMY 
Sbjct: 245 MFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYC 304

Query: 304 KCGCLEDARRIFD 309
           KCGC+E+   +F+
Sbjct: 305 KCGCIEEGLNVFE 317

[Close]

BLAST of MC11g_new0223.1 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.6e-50
Identity = 100/301 (33.22%), Postives = 169/301 (56.15%), Query Frame = 0


Query: 14  ALHHRASPTPDLLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALNSG---FSYA 73
           +L H    T   L   +   ELKQ+HA ++KT     S  +++  S C  ++      YA
Sbjct: 9   SLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYA 68

Query: 74  KLIFELLDAPEVALWNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSCSFVLKACSRL 133
           +++F+  D P+  LWN  +R F+  D P  ++ L+ R+       + Y+   +LKACS L
Sbjct: 69  QIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNL 128

Query: 134 LDVGNGRIVHGYVEKLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMI 193
                   +H  + KLG +++V+  N ++N YA+ G  ++A ++FD++P+ D ++WN +I
Sbjct: 129 SAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVI 188

Query: 194 AQLIKRADVEGAYNLFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEV 253
              +K   ++ A  LF +M E++  SWT+MI+GY Q    KEA+ LF EM+ + + P+ V
Sbjct: 189 KGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNV 248

Query: 254 TVVAVLVACADLGNLDLGRRIHDFANRNGYERNVRVCNTLIDMYVKCGCLEDARRIFDNM 312
           ++   L ACA LG L+ G+ IH + N+     +  +   LIDMY KCG +E+A  +F N+
Sbjct: 249 SLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNI 308

[Close]

BLAST of MC11g_new0223.1 vs. TAIR 10
Match: AT1G09190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-50
Identity = 107/288 (37.15%), Postives = 165/288 (57.29%), Query Frame = 0


Query: 25  LLHTFNSPFELKQVHAHLVKTNSPLSSLPLSRVASVCALNSGFSYAKLIFELLDAPEVAL 84
           LLH  N+   L ++HAHL++     S+L L+   S+C   S   YA  +F  +  P V +
Sbjct: 10  LLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLV 69

Query: 85  WNTCLRTFAEGDSPADAISLFYRLRQFDVCPDDYSCSFVLKACSRLLDVGNGRIVHGYVE 144
           +N  ++ ++    P +++S F  ++   +  D+Y+ + +LK+CS L D+  G+ VHG + 
Sbjct: 70  FNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELI 129

Query: 145 KLGLQSNVFLRNMIVNLYALCGEMEVARMVFDKMPQRDVITWNIMIAQLIKRADVEGAYN 204
           + G      +R  +V LY   G M  A+ VFD+M +R+V+ WN+MI       DVE   +
Sbjct: 130 RTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLH 189

Query: 205 LFAEMPERSVRSWTSMIAGYAQCGKPKEAIDLFLEMEEAGLLPNEVTVVAVLVACADLGN 264
           LF +M ERS+ SW SMI+  ++CG+ +EA++LF EM + G  P+E TVV VL   A LG 
Sbjct: 190 LFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGV 249

Query: 265 LDLGRRIHDFANRNG-YERNVRVCNTLIDMYVKCGCLEDARRIFDNME 312
           LD G+ IH  A  +G ++  + V N L+D Y K G LE A  IF  M+
Sbjct: 250 LDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQ 297

The following BLAST results are available for this feature:

BLAST of MC11g_new0223.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	3.4e-53	34.46	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q38959	2.2e-52	36.64	Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop...	[more]
Q9SJG6	7.8e-50	38.66	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
Q9FJY7	2.3e-49	33.22	Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX...	[more]
O80488	3.9e-49	37.15	Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana OX...	[more]

BLAST of MC11g_new0223.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139353.1	2.18e-226	99.37	pentatricopeptide repeat-containing protein At5g66520-like [Momordica charantia]	[more]
XP_038897525.1	1.50e-193	85.13	pentatricopeptide repeat-containing protein At5g66520-like [Benincasa hispida]	[more]
KAG7037315.1	1.57e-190	83.86	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022940221.1	1.62e-190	83.86	pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita moschata]	[more]
KAG6607740.1	6.55e-190	83.54	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of MC11g_new0223.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFF1	1.06e-226	99.37	pentatricopeptide repeat-containing protein At5g66520-like OS=Momordica charanti...	[more]
A0A6J1FHW1	7.85e-191	83.86	pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita moschata...	[more]
A0A6J1IWH8	2.58e-189	83.54	pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita maxima O...	[more]
A0A5D3CCF9	1.70e-187	82.91	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CI89	1.70e-187	82.91	pentatricopeptide repeat-containing protein At5g66520-like OS=Cucumis melo OX=36...	[more]

BLAST of MC11g_new0223.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	2.4e-54	34.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G26630.1	1.6e-53	36.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G42920.1	5.6e-51	38.66	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G66520.1	1.6e-50	33.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G09190.1	2.8e-50	37.15	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 30..179 e-value: 1.5E-13 score: 52.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 180..312 e-value: 3.0E-28 score: 101.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 156..182 e-value: 0.053 score: 13.8 coord: 286..312 e-value: 1.8E-5 score: 24.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 213..260 e-value: 1.6E-10 score: 41.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 216..249 e-value: 5.5E-9 score: 33.7 coord: 286..311 e-value: 6.1E-6 score: 24.1 coord: 184..214 e-value: 2.4E-4 score: 19.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 283..317 score: 9.382931
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 213..247 score: 12.846701
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 182..212 score: 9.240434
None	No IPR available	PANTHER	PTHR47925:SF107	SUBFAMILY NOT NAMED	coord: 171..314
None	No IPR available	PANTHER	PTHR47925:SF107	SUBFAMILY NOT NAMED	coord: 27..221
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 171..314
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 27..221

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g_new0223	MC11g_new0223	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g_new0223.1-cds	MC11g_new0223.1-cds-MC11:9163901..9163980	CDS
MC11g_new0223.1-cds	MC11g_new0223.1-cds-MC11:9164971..9165907	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g_new0223.1	MC11g_new0223.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding