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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGAATACAAGTGTATCGAGGCAGAGAAGGAAGTATTTGACGATTGGGTTAAGGTATTAATGTGTTCTTCTAAGAGTTATTAGACGTGAATGTATAGTAATATATTTTATTTAATTTGCCGTCTCATCCCAATGAAAAAGGACTTTGTAACAAGCCCTTTCCACATTACAATGACCTGACAGATGCTTTTGGCAAGGACAGAGCAATAGGGGCGAATTCAGAGTGTCCAGCAGACGTGGCAACGAGTGTTGTAGCGGCAGTTGCCGAAGATGTGCACTTTGAATCGCAAGATTTCTACATCCCAGACTCGCCAATGTTCAACACCACAGAGGACGTGATGAAGGAGGACTTGCCGAATACGCTTACAAGTAGGCCAACTGTTGCGGGAACGTCATCAGGGGGAGGCAAGAGGAAATGA mRNA sequence ATGAAGAATACAAGTGTATCGAGGCAGAGAAGGAAGTATTTGACGATTGGGTTAAGAGCAATAGGGGCGAATTCAGAGTGTCCAGCAGACGTGGCAACGAGTGTTGTAGCGGCAGTTGCCGAAGATGTGCACTTTGAATCGCAAGATTTCTACATCCCAGACTCGCCAATGTTCAACACCACAGAGGACGTGATGAAGGAGGACTTGCCGAATACGCTTACAAGTAGGCCAACTGTTGCGGGAACGTCATCAGGGGGAGGCAAGAGGAAATGA Coding sequence (CDS) ATGAAGAATACAAGTGTATCGAGGCAGAGAAGGAAGTATTTGACGATTGGGTTAAGAGCAATAGGGGCGAATTCAGAGTGTCCAGCAGACGTGGCAACGAGTGTTGTAGCGGCAGTTGCCGAAGATGTGCACTTTGAATCGCAAGATTTCTACATCCCAGACTCGCCAATGTTCAACACCACAGAGGACGTGATGAAGGAGGACTTGCCGAATACGCTTACAAGTAGGCCAACTGTTGCGGGAACGTCATCAGGGGGAGGCAAGAGGAAATGA Protein sequence MKNTSVSRQRRKYLTIGLRAIGANSECPADVATSVVAAVAEDVHFESQDFYIPDSPMFNTTEDVMKEDLPNTLTSRPTVAGTSSGGGKRK
Homology
BLAST of MC09g_new0261.1 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia]) HSP 1 Score: 108 bits (269), Expect = 6.36e-27 Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 19 RAIGANSECPADVATSVVAAVAEDVHFESQDFYIPDSPMFNTTEDVMKEDLPNTLTSRPT 78
RA GAN +CP D+A+S A +AED HFE+QDFYIPD PMFNTTED ++EDLPNT TS+PT
Sbjct: 52 RATGANLDCPVDMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPT 111
Query: 79 VAGTSSGGGKRK 90
+ GTSSGG KRK
Sbjct: 112 I-GTSSGGSKRK 122
BLAST of MC09g_new0261.1 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1) HSP 1 Score: 108 bits (269), Expect = 3.08e-27 Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 19 RAIGANSECPADVATSVVAAVAEDVHFESQDFYIPDSPMFNTTEDVMKEDLPNTLTSRPT 78
RA GAN +CP D+A+S A +AED HFE+QDFYIPD PMFNTTED ++EDLPNT TS+PT
Sbjct: 52 RATGANLDCPVDMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPT 111
Query: 79 VAGTSSGGGKRK 90
+ GTSSGG KRK
Sbjct: 112 I-GTSSGGSKRK 122
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_022158565.1 | 6.36e-27 | 70.83 | uncharacterized protein LOC111025018 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DW73 | 3.08e-27 | 70.83 | uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..82 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..90 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MC09g_new0261.1-cds | MC09g_new0261.1-cds-MC09:12346327..12346543 | CDS |
| MC09g_new0261.1-cds | MC09g_new0261.1-cds-MC09:12346692..12346747 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MC09g_new0261.1 | MC09g_new0261.1-protein | polypeptide |
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