MC09g_new0261.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0261.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC09: 12346327 .. 12346747 (-)
Sequence length	273
RNA-Seq Expression	MC09g_new0261.1
Synteny	MC09g_new0261.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATACAAGTGTATCGAGGCAGAGAAGGAAGTATTTGACGATTGGGTTAAGGTATTAATGTGTTCTTCTAAGAGTTATTAGACGTGAATGTATAGTAATATATTTTATTTAATTTGCCGTCTCATCCCAATGAAAAAGGACTTTGTAACAAGCCCTTTCCACATTACAATGACCTGACAGATGCTTTTGGCAAGGACAGAGCAATAGGGGCGAATTCAGAGTGTCCAGCAGACGTGGCAACGAGTGTTGTAGCGGCAGTTGCCGAAGATGTGCACTTTGAATCGCAAGATTTCTACATCCCAGACTCGCCAATGTTCAACACCACAGAGGACGTGATGAAGGAGGACTTGCCGAATACGCTTACAAGTAGGCCAACTGTTGCGGGAACGTCATCAGGGGGAGGCAAGAGGAAATGA

mRNA sequence

ATGAAGAATACAAGTGTATCGAGGCAGAGAAGGAAGTATTTGACGATTGGGTTAAGAGCAATAGGGGCGAATTCAGAGTGTCCAGCAGACGTGGCAACGAGTGTTGTAGCGGCAGTTGCCGAAGATGTGCACTTTGAATCGCAAGATTTCTACATCCCAGACTCGCCAATGTTCAACACCACAGAGGACGTGATGAAGGAGGACTTGCCGAATACGCTTACAAGTAGGCCAACTGTTGCGGGAACGTCATCAGGGGGAGGCAAGAGGAAATGA

Coding sequence (CDS)

ATGAAGAATACAAGTGTATCGAGGCAGAGAAGGAAGTATTTGACGATTGGGTTAAGAGCAATAGGGGCGAATTCAGAGTGTCCAGCAGACGTGGCAACGAGTGTTGTAGCGGCAGTTGCCGAAGATGTGCACTTTGAATCGCAAGATTTCTACATCCCAGACTCGCCAATGTTCAACACCACAGAGGACGTGATGAAGGAGGACTTGCCGAATACGCTTACAAGTAGGCCAACTGTTGCGGGAACGTCATCAGGGGGAGGCAAGAGGAAATGA

Protein sequence

MKNTSVSRQRRKYLTIGLRAIGANSECPADVATSVVAAVAEDVHFESQDFYIPDSPMFNTTEDVMKEDLPNTLTSRPTVAGTSSGGGKRK

Homology

[Close]

BLAST of MC09g_new0261.1 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 108 bits (269), Expect = 6.36e-27
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 19  RAIGANSECPADVATSVVAAVAEDVHFESQDFYIPDSPMFNTTEDVMKEDLPNTLTSRPT 78
           RA GAN +CP D+A+S  A +AED HFE+QDFYIPD PMFNTTED ++EDLPNT TS+PT
Sbjct: 52  RATGANLDCPVDMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPT 111

Query: 79  VAGTSSGGGKRK 90
           + GTSSGG KRK
Sbjct: 112 I-GTSSGGSKRK 122

[Close]

BLAST of MC09g_new0261.1 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 3.08e-27
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 19  RAIGANSECPADVATSVVAAVAEDVHFESQDFYIPDSPMFNTTEDVMKEDLPNTLTSRPT 78
           RA GAN +CP D+A+S  A +AED HFE+QDFYIPD PMFNTTED ++EDLPNT TS+PT
Sbjct: 52  RATGANLDCPVDMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPT 111

Query: 79  VAGTSSGGGKRK 90
           + GTSSGG KRK
Sbjct: 112 I-GTSSGGSKRK 122

The following BLAST results are available for this feature:

BLAST of MC09g_new0261.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0261.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158565.1	6.36e-27	70.83	uncharacterized protein LOC111025018 [Momordica charantia]	[more]

BLAST of MC09g_new0261.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW73	3.08e-27	70.83	uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of MC09g_new0261.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC09g_new0261	MC09g_new0261	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC09g_new0261.1-cds	MC09g_new0261.1-cds-MC09:12346327..12346543	CDS
MC09g_new0261.1-cds	MC09g_new0261.1-cds-MC09:12346692..12346747	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC09g_new0261.1	MC09g_new0261.1-protein	polypeptide