MC08g2060.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2060.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	BnaA10g11140D protein
Location	MC08: 29238597 .. 29238782 (-)
Sequence length	186
RNA-Seq Expression	MC08g2060.1
Synteny	MC08g2060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTCTGCAAGGAGGAGGAGCTGGTTCGCCGGCAGGCCAGCGGCACGTGCCCGTCATGTGGGGGGAAAGTTGAGGCGGTGGACGTGGAGAGGAAATGGAGATTGTTTTCTGTTCCGCTGTGTTTCAAAATCAAGAGGAAGTATCTCTGTGTAATGTGTGGTCGTCGATTGGAGTTGAACCAT

mRNA sequence

ATGATATTCTGCAAGGAGGAGGAGCTGGTTCGCCGGCAGGCCAGCGGCACGTGCCCGTCATGTGGGGGGAAAGTTGAGGCGGTGGACGTGGAGAGGAAATGGAGATTGTTTTCTGTTCCGCTGTGTTTCAAAATCAAGAGGAAGTATCTCTGTGTAATGTGTGGTCGTCGATTGGAGTTGAACCAT

Coding sequence (CDS)

ATGATATTCTGCAAGGAGGAGGAGCTGGTTCGCCGGCAGGCCAGCGGCACGTGCCCGTCATGTGGGGGGAAAGTTGAGGCGGTGGACGTGGAGAGGAAATGGAGATTGTTTTCTGTTCCGCTGTGTTTCAAAATCAAGAGGAAGTATCTCTGTGTAATGTGTGGTCGTCGATTGGAGTTGAACCAT

Protein sequence

MIFCKEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLELNH

Homology

[Close]

BLAST of MC08g2060.1 vs. NCBI nr
Match: XP_022149938.1 (uncharacterized protein LOC111018230 [Momordica charantia])

HSP 1 Score: 137 bits (346), Expect = 5.04e-41
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MIFCKEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL 60
          MIFCKEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL
Sbjct: 1  MIFCKEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL 60

Query: 61 NH 62
          NH
Sbjct: 61 NH 62

[Close]

BLAST of MC08g2060.1 vs. NCBI nr
Match: XP_038891000.1 (uncharacterized protein LOC120080412 [Benincasa hispida])

HSP 1 Score: 115 bits (287), Expect = 5.27e-32
Identity = 53/63 (84.13%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60
          M+FC EE EL RRQA+GTCPSCGGKV+AVDVERKWRL  VPLCFKIKRKY CVMCGRRLE
Sbjct: 1  MLFCNEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LNH 62
          L H
Sbjct: 61 LYH 63

[Close]

BLAST of MC08g2060.1 vs. NCBI nr
Match: XP_008451097.1 (PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo])

HSP 1 Score: 114 bits (285), Expect = 1.07e-31
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60
          M+FCKEE EL RRQA+GTCPSCGGKV+AVDVERKWRL  VPLCFKIKRKY C++CGRRLE
Sbjct: 1  MLFCKEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCLICGRRLE 60

Query: 61 LNH 62
          L H
Sbjct: 61 LYH 63

[Close]

BLAST of MC08g2060.1 vs. NCBI nr
Match: XP_011648964.1 (uncharacterized protein LOC105434563 [Cucumis sativus])

HSP 1 Score: 110 bits (274), Expect = 5.09e-30
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60
          M+FCKEE EL R+QA+GTCPSCGGKV+AVDVER+WR   VPLCFKIKRKY C++CGRRLE
Sbjct: 1  MLFCKEEKELGRQQATGTCPSCGGKVQAVDVERRWRFCFVPLCFKIKRKYYCLICGRRLE 60

Query: 61 LNH 62
          L H
Sbjct: 61 LYH 63

[Close]

BLAST of MC08g2060.1 vs. NCBI nr
Match: XP_022929732.1 (uncharacterized protein LOC111436231 [Cucurbita moschata] >XP_022996867.1 uncharacterized protein LOC111491984 [Cucurbita maxima])

HSP 1 Score: 107 bits (268), Expect = 4.19e-29
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60
          M+FCKE+ EL RRQA G CP CGGKVEAVDVERKWRL   PLCFKIKRKY CVMCGRRLE
Sbjct: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LNH 62
          L +
Sbjct: 61 LYY 63

[Close]

BLAST of MC08g2060.1 vs. ExPASy TrEMBL
Match: A0A6J1D838 (uncharacterized protein LOC111018230 OS=Momordica charantia OX=3673 GN=LOC111018230 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 2.44e-41
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MIFCKEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL 60
          MIFCKEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL
Sbjct: 1  MIFCKEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL 60

Query: 61 NH 62
          NH
Sbjct: 61 NH 62

[Close]

BLAST of MC08g2060.1 vs. ExPASy TrEMBL
Match: A0A1S3BRU0 (uncharacterized protein LOC103492473 OS=Cucumis melo OX=3656 GN=LOC103492473 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 5.16e-32
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60
          M+FCKEE EL RRQA+GTCPSCGGKV+AVDVERKWRL  VPLCFKIKRKY C++CGRRLE
Sbjct: 1  MLFCKEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCLICGRRLE 60

Query: 61 LNH 62
          L H
Sbjct: 61 LYH 63

[Close]

BLAST of MC08g2060.1 vs. ExPASy TrEMBL
Match: A0A6J1K383 (uncharacterized protein LOC111491984 OS=Cucurbita maxima OX=3661 GN=LOC111491984 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 2.03e-29
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60
          M+FCKE+ EL RRQA G CP CGGKVEAVDVERKWRL   PLCFKIKRKY CVMCGRRLE
Sbjct: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LNH 62
          L +
Sbjct: 61 LYY 63

[Close]

BLAST of MC08g2060.1 vs. ExPASy TrEMBL
Match: A0A6J1ENJ0 (uncharacterized protein LOC111436231 OS=Cucurbita moschata OX=3662 GN=LOC111436231 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 2.03e-29
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60
          M+FCKE+ EL RRQA G CP CGGKVEAVDVERKWRL   PLCFKIKRKY CVMCGRRLE
Sbjct: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LNH 62
          L +
Sbjct: 61 LYY 63

[Close]

BLAST of MC08g2060.1 vs. ExPASy TrEMBL
Match: A0A6J1JA50 (uncharacterized protein LOC111484931 OS=Cucurbita maxima OX=3661 GN=LOC111484931 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.46e-23
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 5  KEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLELNH 62
          KE+EL R+QA GTCP C GKV A+DVER+W+L  +PLC KIKRKYLC +C RRLEL H
Sbjct: 10 KEKELGRQQAPGTCPFCRGKVNAIDVERRWKLCFLPLCLKIKRKYLCTLCSRRLELCH 67

[Close]

BLAST of MC08g2060.1 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-17
Identity = 38/58 (65.52%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 5  KEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLELNH 63
          +E EL R+QA G+CP CGGKV+ +DVERKW    VPLCFKIKRKY C  C RRL L H
Sbjct: 10 EETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCDRRLVLYH 67

[Close]

BLAST of MC08g2060.1 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-14
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 5  KEEELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL 61
          ++ EL R+QA G CP CGGKV AVD+E KW    +PLCFK+KRKY C  C R L L
Sbjct: 10 EKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCERHLVL 65

[Close]

BLAST of MC08g2060.1 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 4  CKEEELV--RRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRL 59
          C ++E V  R  A G CP CGG V+ VDV  +WR   VPL  K KR++LC  CG+RL
Sbjct: 7  CDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCGKRL 63

The following BLAST results are available for this feature:

BLAST of MC08g2060.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g2060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149938.1	5.04e-41	100.00	uncharacterized protein LOC111018230 [Momordica charantia]	[more]
XP_038891000.1	5.27e-32	84.13	uncharacterized protein LOC120080412 [Benincasa hispida]	[more]
XP_008451097.1	1.07e-31	82.54	PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo]	[more]
XP_011648964.1	5.09e-30	77.78	uncharacterized protein LOC105434563 [Cucumis sativus]	[more]
XP_022929732.1	4.19e-29	79.37	uncharacterized protein LOC111436231 [Cucurbita moschata] >XP_022996867.1 unchar...	[more]

BLAST of MC08g2060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D838	2.44e-41	100.00	uncharacterized protein LOC111018230 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1S3BRU0	5.16e-32	82.54	uncharacterized protein LOC103492473 OS=Cucumis melo OX=3656 GN=LOC103492473 PE=...	[more]
A0A6J1K383	2.03e-29	79.37	uncharacterized protein LOC111491984 OS=Cucurbita maxima OX=3661 GN=LOC111491984...	[more]
A0A6J1ENJ0	2.03e-29	79.37	uncharacterized protein LOC111436231 OS=Cucurbita moschata OX=3662 GN=LOC1114362...	[more]
A0A6J1JA50	1.46e-23	68.97	uncharacterized protein LOC111484931 OS=Cucurbita maxima OX=3661 GN=LOC111484931...	[more]

BLAST of MC08g2060.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57123.1	1.6e-17	65.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	1.3e-14	58.93	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10695.1	1.1e-10	50.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 5..60
None	No IPR available	PANTHER	PTHR33320:SF13	SUBFAMILY NOT NAMED	coord: 5..60

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g2060	MC08g2060	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g2060.1-cds	MC08g2060.1-cds-MC08:29238597..29238782	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g2060.1	MC08g2060.1-protein	polypeptide