MC03g0256.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0256.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC03: 7534558 .. 7534758 (+)
Sequence length	201
RNA-Seq Expression	MC03g0256.1
Synteny	MC03g0256.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACATTAAAATCCTATTTAGAGTCTCAAGGAACACTGAAACTGGACGAAGAAATTATGATGACCACCCTTAGGAAAATATTAGATTATATGATAGGAATGAGATATGGACCAAAGCTACCTAAAAGTCAACGATTGATATTGTACTCAGAAGAGTATGTCCAGACTTTAGAGTCTCACCTTGCAAAGGTTGAGGAA

mRNA sequence

ATGATTACATTAAAATCCTATTTAGAGTCTCAAGGAACACTGAAACTGGACGAAGAAATTATGATGACCACCCTTAGGAAAATATTAGATTATATGATAGGAATGAGATATGGACCAAAGCTACCTAAAAGTCAACGATTGATATTGTACTCAGAAGAGTATGTCCAGACTTTAGAGTCTCACCTTGCAAAGGTTGAGGAA

Coding sequence (CDS)

ATGATTACATTAAAATCCTATTTAGAGTCTCAAGGAACACTGAAACTGGACGAAGAAATTATGATGACCACCCTTAGGAAAATATTAGATTATATGATAGGAATGAGATATGGACCAAAGCTACCTAAAAGTCAACGATTGATATTGTACTCAGAAGAGTATGTCCAGACTTTAGAGTCTCACCTTGCAAAGGTTGAGGAA

Protein sequence

MITLKSYLESQGTLKLDEEIMMTTLRKILDYMIGMRYGPKLPKSQRLILYSEEYVQTLESHLAKVEE

Homology

[Close]

BLAST of MC03g0256.1 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 4.31e-09
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   MITLKSYLESQGTLKLDEEIMMTTLRKILDYMIGMRYGPKLPKSQ-RLILYSEEYVQTLE 60
           MITLK+Y  SQG  K +EEIM T L K  +Y+IGM YGPK  +++     YS+EYV++LE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  SHLAKVEE 67
           + L K EE
Sbjct: 167 ARLQKHEE 174

[Close]

BLAST of MC03g0256.1 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 6.25e-09
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   MITLKSYLESQGTLKLDEEIMMTTLRKILDYMIGMRYGPKLPKSQ-RLILYSEEYVQTLE 60
           MITLK+Y  SQG  K +EEIM T L K  +Y+IGM YGPK  +++     YS+EYV++LE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  SHLAKVEE 67
           + L K EE
Sbjct: 172 ARLQKHEE 179

[Close]

BLAST of MC03g0256.1 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.09e-09
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   MITLKSYLESQGTLKLDEEIMMTTLRKILDYMIGMRYGPKLPKSQ-RLILYSEEYVQTLE 60
           MITLK+Y  SQG  K +EEIM T L K  +Y+IGM YGPK  +++     YS+EYV++LE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  SHLAKVEE 67
           + L K EE
Sbjct: 167 ARLQKHEE 174

[Close]

BLAST of MC03g0256.1 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.03e-09
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1   MITLKSYLESQGTLKLDEEIMMTTLRKILDYMIGMRYGPKLPKSQ-RLILYSEEYVQTLE 60
           MITLK+Y  SQG  K +EEIM T L K  +Y+IGM YGPK  +++     YS+EYV++LE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  SHLAKVEE 67
           + L K EE
Sbjct: 172 ARLQKHEE 179

The following BLAST results are available for this feature:

BLAST of MC03g0256.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g0256.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143616.1	4.31e-09	52.94	uncharacterized protein LOC111013476 [Momordica charantia]	[more]
XP_022148911.1	6.25e-09	52.94	uncharacterized protein LOC111017461 [Momordica charantia]	[more]

BLAST of MC03g0256.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQT5	2.09e-09	52.94	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D6S9	3.03e-09	52.94	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of MC03g0256.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC03g0256	MC03g0256	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC03g0256.1-cds	MC03g0256.1-cds-MC03:7534558..7534758	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC03g0256.1	MC03g0256.1-protein	polypeptide