MC00g0254.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0254.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ATP synthase epsilon chain, chloroplastic
Location	scaffold25: 229421 .. 229504 (-)
Sequence length	84
RNA-Seq Expression	MC00g0254.1
Synteny	MC00g0254.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGATGCGGAGAAGGCTAGTGGCATTGATCCAGAAGAAGCTCAACAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCT

mRNA sequence

AATGATGCGGAGAAGGCTAGTGGCATTGATCCAGAAGAAGCTCAACAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCT

Coding sequence (CDS)

AATGATGCGGAGAAGGCTAGTGGCATTGATCCAGAAGAAGCTCAACAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCT

Protein sequence

NDAEKASGIDPEEAQQTLEIAEANLSKA

Homology

[Close]

BLAST of MC00g0254.1 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-05
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 29
           NDAEKAS IDP+EAQQTLEIAEANL KA
Sbjct: 81  NDAEKASDIDPQEAQQTLEIAEANLRKA 108

[Close]

BLAST of MC00g0254.1 vs. ExPASy Swiss-Prot
Match: Q70XZ7 (ATP synthase epsilon chain, chloroplastic OS=Amborella trichopoda OX=13333 GN=atpE PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-05
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 29
           NDAEK S IDP+EAQQTLEIAEANLS+A
Sbjct: 79  NDAEKGSDIDPQEAQQTLEIAEANLSRA 106

[Close]

BLAST of MC00g0254.1 vs. ExPASy Swiss-Prot
Match: Q09X11 (ATP synthase epsilon chain, chloroplastic OS=Morus indica OX=248361 GN=atpE PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-05
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 29
           NDAEK S IDP+EAQQTLE+AEANLSKA
Sbjct: 79  NDAEKGSDIDPQEAQQTLEMAEANLSKA 106

[Close]

BLAST of MC00g0254.1 vs. ExPASy Swiss-Prot
Match: Q2PMU9 (ATP synthase epsilon chain, chloroplastic OS=Glycine max OX=3847 GN=atpE PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.4e-05
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 29
           NDAEK S IDP+EAQQTLEIAEANL+KA
Sbjct: 80  NDAEKGSDIDPQEAQQTLEIAEANLNKA 107

[Close]

BLAST of MC00g0254.1 vs. ExPASy Swiss-Prot
Match: Q7YJW6 (ATP synthase epsilon chain, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=atpE PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.1e-05
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 29
           NDAEK S IDP+EAQ+TLEIAEANLSKA
Sbjct: 79  NDAEKGSDIDPQEAQRTLEIAEANLSKA 106

[Close]

BLAST of MC00g0254.1 vs. NCBI nr
Match: OIW15166.1 (hypothetical protein TanjilG_21142 [Lupinus angustifolius] >OIW17249.1 hypothetical protein TanjilG_00212 [Lupinus angustifolius])

HSP 1 Score: 50.4 bits (119), Expect = 6.65e-07
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  NDAEKASGIDPEEAQQTLEIAEANLSKA 28
          NDAEK S IDPEEAQQTLEIAEANLSKA
Sbjct: 20 NDAEKGSDIDPEEAQQTLEIAEANLSKA 47

[Close]

BLAST of MC00g0254.1 vs. NCBI nr
Match: ALO22005.1 (AtpE [Cucurbita digitata])

HSP 1 Score: 51.6 bits (122), Expect = 8.45e-07
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEKASGIDP+EAQQTLEIAEANL KA
Sbjct: 81  NDAEKASGIDPQEAQQTLEIAEANLRKA 108

[Close]

BLAST of MC00g0254.1 vs. NCBI nr
Match: ALO21940.1 (AtpE [Cucurbita cordata])

HSP 1 Score: 51.6 bits (122), Expect = 8.45e-07
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEKASGIDP+EAQQTLEIAEANL KA
Sbjct: 81  NDAEKASGIDPQEAQQTLEIAEANLRKA 108

[Close]

BLAST of MC00g0254.1 vs. NCBI nr
Match: YP_009771810.1 (ATP synthase CF1 epsilon subunit [Baphia racemosa] >QIT02595.1 ATP synthase CF1 epsilon subunit [Baphia racemosa])

HSP 1 Score: 50.8 bits (120), Expect = 1.59e-06
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEK SGIDP+EAQQTLEIAEANL+KA
Sbjct: 79  NDAEKGSGIDPQEAQQTLEIAEANLNKA 106

[Close]

BLAST of MC00g0254.1 vs. NCBI nr
Match: YP_009766826.1 (ATP synthase CF1 epsilon subunit [Arachis duranensis] >QIS97361.1 ATP synthase CF1 epsilon subunit [Arachis duranensis] >QYK91453.1 ATP synthase CF1 epsilon subunit [Arachis pintoi])

HSP 1 Score: 50.8 bits (120), Expect = 1.62e-06
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEK+S IDPEEAQQTLEIAEANLSKA
Sbjct: 79  NDAEKSSDIDPEEAQQTLEIAEANLSKA 106

[Close]

BLAST of MC00g0254.1 vs. ExPASy TrEMBL
Match: A0A1J7HQW0 (ATP-synt_DE domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_00212 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.22e-07
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  NDAEKASGIDPEEAQQTLEIAEANLSKA 28
          NDAEK S IDPEEAQQTLEIAEANLSKA
Sbjct: 20 NDAEKGSDIDPEEAQQTLEIAEANLSKA 47

[Close]

BLAST of MC00g0254.1 vs. ExPASy TrEMBL
Match: A0A0S2IEP7 (AtpE OS=Cucurbita digitata OX=200225 GN=atpE PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.09e-07
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEKASGIDP+EAQQTLEIAEANL KA
Sbjct: 81  NDAEKASGIDPQEAQQTLEIAEANLRKA 108

[Close]

BLAST of MC00g0254.1 vs. ExPASy TrEMBL
Match: A0A0S2IDY4 (AtpE OS=Cucurbita cordata OX=1094862 GN=atpE PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.09e-07
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEKASGIDP+EAQQTLEIAEANL KA
Sbjct: 81  NDAEKASGIDPQEAQQTLEIAEANLRKA 108

[Close]

BLAST of MC00g0254.1 vs. ExPASy TrEMBL
Match: A0A6H0EL58 (ATP synthase CF1 epsilon subunit OS=Baphia racemosa OX=143050 GN=atpE PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.71e-07
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEK SGIDP+EAQQTLEIAEANL+KA
Sbjct: 79  NDAEKGSGIDPQEAQQTLEIAEANLNKA 106

[Close]

BLAST of MC00g0254.1 vs. ExPASy TrEMBL
Match: A0A6H0E4V2 (ATP synthase CF1 epsilon subunit OS=Arachis duranensis OX=130453 GN=atpE PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.84e-07
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 28
           NDAEK+S IDPEEAQQTLEIAEANLSKA
Sbjct: 79  NDAEKSSDIDPEEAQQTLEIAEANLSKA 106

[Close]

BLAST of MC00g0254.1 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 46.2 bits (108), Expect = 5.0e-06
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1   NDAEKASGIDPEEAQQTLEIAEANLSKA 29
           NDAEK S IDP+EAQQTLEIAEANL KA
Sbjct: 79  NDAEKNSDIDPQEAQQTLEIAEANLRKA 106

The following BLAST results are available for this feature:

BLAST of MC00g0254.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZG9	1.4e-05	89.29	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
Q70XZ7	2.4e-05	85.71	ATP synthase epsilon chain, chloroplastic OS=Amborella trichopoda OX=13333 GN=at...	[more]
Q09X11	2.4e-05	85.71	ATP synthase epsilon chain, chloroplastic OS=Morus indica OX=248361 GN=atpE PE=3...	[more]
Q2PMU9	2.4e-05	85.71	ATP synthase epsilon chain, chloroplastic OS=Glycine max OX=3847 GN=atpE PE=3 SV...	[more]
Q7YJW6	3.1e-05	85.71	ATP synthase epsilon chain, chloroplastic OS=Calycanthus floridus var. glaucus O...	[more]

BLAST of MC00g0254.1 vs. NCBI nr


Match Name	E-value	Identity	Description
OIW15166.1	6.65e-07	92.86	hypothetical protein TanjilG_21142 [Lupinus angustifolius] >OIW17249.1 hypotheti...	[more]
ALO22005.1	8.45e-07	92.86	AtpE [Cucurbita digitata]	[more]
ALO21940.1	8.45e-07	92.86	AtpE [Cucurbita cordata]	[more]
YP_009771810.1	1.59e-06	89.29	ATP synthase CF1 epsilon subunit [Baphia racemosa] >QIT02595.1 ATP synthase CF1 ...	[more]
YP_009766826.1	1.62e-06	92.86	ATP synthase CF1 epsilon subunit [Arachis duranensis] >QIS97361.1 ATP synthase C...	[more]

BLAST of MC00g0254.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1J7HQW0	3.22e-07	92.86	ATP-synt_DE domain-containing protein OS=Lupinus angustifolius OX=3871 GN=Tanjil...	[more]
A0A0S2IEP7	4.09e-07	92.86	AtpE OS=Cucurbita digitata OX=200225 GN=atpE PE=3 SV=1	[more]
A0A0S2IDY4	4.09e-07	92.86	AtpE OS=Cucurbita cordata OX=1094862 GN=atpE PE=3 SV=1	[more]
A0A6H0EL58	7.71e-07	89.29	ATP synthase CF1 epsilon subunit OS=Baphia racemosa OX=143050 GN=atpE PE=3 SV=1	[more]
A0A6H0E4V2	7.84e-07	92.86	ATP synthase CF1 epsilon subunit OS=Arachis duranensis OX=130453 GN=atpE PE=3 SV...	[more]

BLAST of MC00g0254.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00470.1	5.0e-06	85.71	ATP synthase epsilon chain	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.480		coord: 11..28 e-value: 4.9E-7 score: 31.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC00g0254	MC00g0254	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC00g0254.1-cds	MC00g0254.1-cds-scaffold25:229421..229504	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC00g0254.1	MC00g0254.1-protein	polypeptide