Lsi11G010060.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G010060.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DEAD-box ATP-dependent RNA helicase FANCM isoform X1
Location	chr11: 16981817 .. 16997296 (-)
Sequence length	825
RNA-Seq Expression	Lsi11G010060.1
Synteny	Lsi11G010060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTGATATGTGTCCGATGGCTTCAACAAGTAATCGAGAATTCATTGTCGACGACGACGTAAATGCCGTCCTTCCTCTTTCTTGTTCTATGGCGTTTTATATATCTGAGTCCTTTGATCCTTCTCTCCCATTCCCTTTTCAGGATTTCGACTGGGAAGCAGCCGTCAAGGAAATTGATGTGGCCTGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCGACGCCTCTGCAGAAACCCCATCTTCATTTCCAATTTCCAAGGAGAATGAAAAACGCGGGACTTCTCGCCAGTCTACACTTCACAGATTTATCGTAAATCCAAATCCCAAGTCTCGAAAGAAAACACTGGACGTCGAACAACCGGTTCAAGATCCCGGCCTTGTTGAAGACACGGTTGGTCTTGTTGACATCGATGAGGAGGCAGCTAAGACTTGGATATATCCAGGTCGTCTCTGAATTCCGAACTAATTTTGATTTCTGTTGTTTTGGGATTGTTATCCACGGACTCAATTTTGAGTTAGGGAAGCAGACACGCTAGACTTTAGGCAATTTGCTTGTAGAAAATGCCATCTATGTCCACTCCATTTTGCATCTTCATAAGCTTGAACACCATAGGATTGTCAACTAACTCACTGTAAACCTCTCCAGCACCTGCTGGTGCACACACATATTTTTTCCCTAACCGCTGAAGATTCCACTTGCTTTTTTGCTCTACTTCAATGTTAAGATTATATTTCATTTTCCCAGTACGTCAAATTCAAGGAGCATCATGAATATTAGATTTCTTAAATTCAGTGAACACAAGCTCGTCATTTTCCAGCAAGTATAAAGTCATTAGTATAAATACCAGCTTCTTCAGGTGTCGTGTTTTACTGCAAGAGTTGGACTTCTATTTTGGAATGTAACGAGTCCAACTTACTTCCTGAAACCATACAGTTTTCGATAGCTTTTCTTTTGTTTCAACTCTAAGTTTGTTTCATATGCCAACACATTCCTCAAGTTTGAGTTCACTGTTCGATATGTAGGCTATAAATTCATGAAGTCAGTAGATAAGGTGATTTATTTGGTATTATGATACAGTATTTTGCGTCATTGATTGCTTGATGGATTATTTCTATTCCTAGAAGTTAGGTGTTAATAGAATTTTAATCTGATTTGCTGTCAGTTAAATTATGTAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACCAAGACAGCACTATTTTCAAATACGTTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCCGAGGGTAAGGGAAAACTTTTGCTATCTTATTGATTGTTAAAGTTATATTATCTCAATGGTAATGTCCAGTGGCCAACTTGAACATAGTTTCACTAAGGTAGGTTCGATCCAAGGTATCATGAAGTTTTTTTTAGTCCCACTATTATTTGGAAGGATACAAATTTATAGTGCATTTTTTCTGCTTGCGAGGTTTCTTTTGCCACTAAAGTAGTGCTCTTAGAAAACTAACAGAACATCCTTGAAGCTTTTAAATAAGAACTGTGTCAAAGCTCCAAGCAAAAGGAGGGAGATTTACGTGACAATTTTTGCTACTTTGGTAGGATTTTGGGAGAAAAATAATGCTTTTTTGGTTGTTTGAGTTGATTTTAAATAGATTCAAGTGAAAATAGTTAGGAAGATATTTGTTTTATGAGTTGGGTATCCTATATAAGATTATGAGTTAGGTATCCTATTGTAAGAGACCAAACACACCGTTTGGATAAAGGCAAGGATAAAATTAAAAATGAGGATGACAAAATACCTTCAAAATCTTTCTCAACAAATATCTATCCCATCACGTGATGTTAGTTGACAAGTTCTCCACTAGAAAATAGACATGTGTAAATTCTTTATTCATTTGTAATTATTTAATTCCCTTTGTATATTCTGTAAAATCCTAAATGGGTGCCTTGTCCTTTGTATAAAAGGAGGTCTCCTCCTATCTTGAAATACAAGAAAAATTCAGTGGCTATTTCTCTATGCAAAAGACACTAAATCACTGTTTTGGTATCATAGCTATTTTGGCAAGTGCCTTGTCTTTCGTATCTTCAGCTATGTTCTCAGTTACCCCTACTTGTAGCTCTCCTCCATTAAATCAACTTCTCAACCAAGTCACTACTATCGAACTTGAACATGGAAACTTTTTTTTATGGAGGAATTTGGCACTGCCCATACTAAAAAGCTATAGATTGAAGGGGCATCTCACCGTTGAGACTGTTTATCCACTAAGATTCATTATTCTGTCCAACTAGCCGACGACCTCAGCTCAACCCACGCAGAAGCTATCCGTGGAGATTAGACGTCTGCTGCTGCCTCCGAAACGTCTCAACAAGGTACAAGTATTGCTTCAAGCTCAATCTTTGTTTTAACTGAAAATCCTCTCTATAAGTCTTGGATGGCTGTCGATCAACTTTTACTAGGTTGGCTCTATAACTCCATGAATGCCGAAATGGTAACCCAAGTTATGGGTTATGAGAGTGCTAAGGATCTATGGACAGCAATACGAGTTATTTGGGTTGCAGTCGAGAGCGGAGGAAGATTACCTTCACCAAGTTTTTCAACAAACCTGCAAGGGGTCTCTCAAGATGTCTGACTATTTCAAAACTATGAAGACACACATTGATAATCTCGAGTTAGCTGAGAGTCTAGTTCCTACGAGAGCCTTGGTGTTCCAAGTTTTGCTGAGACTAGATGAAAAGTTCAACTCGGTCGTTGCTACCATTCAGGGTCGTCCTGAAATTTCGTGGACTGATATGCAAACCGAACTCCTTAGCTTTGAAAAGAGGTTAAATTTTCAGAACACTCAAAAAAGTCCTATTTCATTTAACAACTCTCCTTGTGAATATGGCTAGCAATTTGGGTCAGAAAAACTCAAGTGGTAATGGGCAACGGAGCAATAATGGACATAATAATAGGCAAAAAAATTATGACAATCAAAACATTCAGAGGAGGCGGCGATGGACGAAATCAGGGCAAAGGACGATGGAGTAGCAGTGGAAACAACCGCCCTATTTGTCAAGTTTGGCAAGTATGGCCACATTGCCTATATTTGCTACCATAGGTTTGAGAAAGATTTTGTTGATCCTGCAAGTCAGGCTAGAGGTGGAAGCTCCGTGCCACAAAATTCTGGAAATCAGAGTAACTCGTTTGCTTTCACTGCCATTCATAACACAACTGCAACTCCTTAGATGGTGGTTGATCCTAACTGGTATGTTGATAGCGGTGCCACTAGTCATGTGACTGAGGACTATAACAACATGATCAATCCACAAATTATGGAGGTATGGAAAAAGTAGTTGGAAATGGAAATAAATTAAAAATTTCTCATGTTGGTACATCTTGCTTAAATACTAACTGTGTCTACTCACTCTTGACAATGGCTTAAATATTGATAGTGTCTACTCACTCTTGACAATGGCTTAAATATTGATAGTGTCTACTCACTCTTGAAAATGTGCTATGTGGGACTGAAATTGCAAAAAATTTAGTGAGTTTGTCAAAGTTGGCAAAAGATAATTTCATGCTGATAATTGCTTTGTAAATGACATGCGTACGGGCAAAGTGGTGCTGAAGGGGGACTTTGAGGATGGACTTTATCGGCTGAATACAAAAGGATCAGTTATTGGTAGTGCTTTAAGTGTAGAAGACAAAAGCTTGAAGTCGGCTAATAATACTGTTGTGTGTTCAATTTTTACTTTACCAAGTATTAATGTTGTTGTGTCCAAGGAAGTTTGGCATAGAAGACTTGGACACCCTTCATATAATGTGCTTAAATCTTTAATCAAGAGTCTAATTCTCGAGCTAATCAACTTTTTGAGCTTGTACATACTGATCTATGGGGTCTAGCTCTTGTGCTTTCAATTGATGGCTATCGTTGTTATGTTCATTTTTTAGATGATTTTAGTCGATTTATCCGCTTCACTTAAAGAGTGATACTGTTGCGGCATTTAATCATTTTCTCACCATGGTCAAAACTCAATTAGGAGTTACTATACAGTTTGACAATGTTGGAGAATACAAACCGATCCATCAGTTGTGTAATCAGTTGGGCATTTAGTTAAGACTGTCATGCCCCTATACTTCTGCACACAATGGACGAGCTAAATGAAAACACCAACAAATTGTTGAAACTGGTCTCACTCTATTGGCTCAAGTTGGGATGCCGTTACGTTTTTGGTGGGAACGTTCCTTATTTCTACTATGCTTATAAATGGCTTACCCTCCAAAGCTATTAATGGTAAAATTCCTCTAGAAGTACTCTTCAAAAGGAAGGTTGATTTCTCAACTTTAAAGACATTTGGATGTGCCTGCTATTCGTATTTTACGTCCCTATCATTCACAATCCTCCCTCGCCGATTCAACCCACTAGTTAGTCAGCGCCGACACCTCCACTAAAATTACTGACTTCATCCCATTACTACCAGAGGTAAAGTTGGTATTTTTAAGCCCAAGATCCTTGCCTCGCGTGTCACTACTTATTGGGTGTTGATGAAACCCACTCGTATTGTCGATGCCTTAGCCACTCCGGTATGGAAGAAAGCCATGGATGTTGATTTCTCAGCTTTACAGAAAAATAACATGTGGGTGCTTGTTCCACCGTCCAAGTCCATGAATATCGTTGGCAGCAAATGGGTGTTTCGCATAAAAAGGGGGATGGACGAGTCTATTGAGCGACATAAAGCCCACTTGGTGGCCAAAGGGTTTCATCAAACACTCGGGGTCGATTTCTTCGAGACTTTCAGTCCGGTGGTCAAGGCATCCACCATCCAAATTGTTCTTTTGTTGGCTGTATTTAGTGGTTGGCATCTACGTCAGCTCGACTCTAATAACGCGTTTCTTAATGGAGCGTTAGATGAAGATGTATATATGTCTCAACCACTCGACTACGTTGATCCACTTTATCCAACACATGTATGCAAACTGAGCAAGGCCATCTATGAGTAAGCAGGCTCCCCAGGCATGGAACTCTATGCTAAAGACCGCACTTCTGAATTGTGGGTTTACAAATAGTAAGTCTGATTCATCTCTATTTATTTATCGGCACAAAAATGTCATTATCTTGCTCCTTGTGTATGTTGATGACTGGAAATGATTCAAGCTGATAATAACTTTTCCTTAAAAGGATTTTGGCATCTTGCGTTATTTCTGGGGGATACAAGTCACTCCAACCGCCTCTGGTCTACTGCTTGCTCAAACCAAATATATTGATGATTTGTTGTTTCGGTTAAACATGGTGGATCTCAAGCCTACTCCCTCACCAAATGTCGTTGGCAAACATCTATTGTTGACTAGTGGGCGTGTCCTTGATAATCCATTTCCATATAGGAGTATGGTTGGGGCGTTACAATACATAACGCACACATGCCCGAACATTTCATATATTGTTAACCATCTAAGTCAGTTCTAAACAACCAATGAATGAACACTGGCGCACTGTTAAACAAGTCCTTCATTATCTCTCTAGTACTCGGCATCATGGTCTCCTTATACAACCAAGTGATAATGCTGCCATTACCGCCTACTCGGATGCCGACTGGGCCTCCAATATTGATGATCGTCGTTCTGTTGCAGCCTATTATGTTTTCGTTGGCAATACACTTATCTCTTGGTCTTCAAAGAAGCAATAAGTTGTTGCTCGATCAAGTACGAAATTTGAATATCGGGCTCTTGCTCATGTTGCTGCTGAGGTTATGTGGATAAGGCAGCTCCTTACTGAGGTTAGTCTTCCCCTGCCCACTATTCCTATTTTCTATTATTTGGTATGCCAACATGAGTGCCGGGGCTCTTGCTTCTAATCTTCTATTTCACGCTCGGTCGAAGCATATAGAAATCGATGTTCATTTTATTTGTGATCAAGTGTTGTGTGGTCAACTCTCAGTCCACTATGTTCCCTTTGCTGATCAACTAGCAGATTGCTTGACAAAGCCTCTTACTCACTCACACTTTCACTTATTAAGGTTTAAACTTGGGGTCATGGAACTCCCTCTCGTTTGAGGGGGGATGTAAGAGACCAAACGCACCGTTCGGATAAAGGCAAGGATAAAATTAAAATGAGGATGACAAAATACCTTCAAATCTTCCTCAACAAATATCCATCCTATCATGTGATGTTAGTTGAAAAGTTCTCCACTCTTGTATCCCTCTATGTAACTTGAGCATTAGTCTCATTTCATTATTTCAATGAAGAAACTCGTTTCCCTTTCAAAAAAAAAAAAAAAAATTGAAAAGTTCTCCACTAGAAAATAGACGTGTAAATTCTTTATTCATTTGTAATTATTTAATTCCCTTTGTATATTCGTAAAACCCTAAATGGGTGCCTTGTCCTCTGCATAAAAGGAGGTCTCCTCCTATCTCGAAAGAAAAATTCAGCGGCTATTTCTATGTGCAAAAGACCCTAAATCACTATTTCCTATATCACCAGTTTTCCTATTTGGTTTCACTTTCGAATCAAGTCAACATGAATAGCTGCATCTTCGGTTCCTATCTAATTATAAATTTTTTTTGTTTATTTGAAAAAAGTTATCCATATTTATTTATTAGTATGGTTTTCTAATGAGAAACAAAGAGTATATATATATATATATATATATATATATATATATATATATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAATTGAAAAGTTCTCCACTAGAAAATAGACGTGTAAATTCTTTATTCATTTGTAATTATTTAATTCCCTTTGTATATTCGTAAAACCCTAAATGGGTGCCTTGTCCTCTGCATAAAAGGAGGTCTCCTCCTATCTCGAAAGAAAAATTCAGCGGCTATTTCTATGTGCAAAAGACCCTAAATCACTATTTCCTATATCACCAGTTTTCCTATTTGGTTTCACTTTCGAATCAAGTCAACATGAATAGCTGCATCTTCGGTTCCTATCTAATTATAAATTTTTTTTGTTTATTTGAAAAAAGTTATCCATATTTATTTATTAGTATGGTTTTCTAATGAGAAACAAAGAGTATATATATATATATATATATATATATATATATATATATATTGACGAAAAAGAGAGTATATTCAACAAAAGAGAACACAACCTAGAGGCCGTAGGGAGGTGGGATCCCCAATCTAAGTTGATGAGGAAACACGATATATACAAAAAGAATTGTGTAAGGCACTCTAAGAAGAGACAAACACGGTAAACTATACATTTTCACAAAACAAATCAAAATAGGACGAAAACTTGTCACAGAATTCTCCCTAAATAAGTAGAGAAAAATAGAAGAGAAGGTGAAAAACTTCTCATATTGATGAAAGGCACTACAACACAAATGATTTCAACATTTTCCTCTAATATTTCATTAGTTTTTCATTTAAAGAAATATGCACATGGGTGACAATTTTGCATTAATAGTTTTCCAACAGAAAAACAACACTAGGCTCTAAATTTCTTTACTCTCGAAAATTTAGGAGTTTAAATTTTAATTAATACAATTATTAGTCTACACACGTCCGAGAATTATGAATTAACGGTTTTCAAATGAAAAAGTACAGAGGGTTTAAAGTTCTAAATTGATTTACTTTTGAAAGTTAAGGATTCTAATTTGTACAATTATTAGTTTCGGGTCTTAATTGATTCAACTTGCAATGTTTAAAAGGGTATAAATTGATTTTTTACCTAACCAAAATTATAAAATAATGGGAAAGCTCTCAGAAGAATATGGAAACAATGGACATTTATTGATGCAATTAAGCTATAAGAGTAAAATATATTACTTCATTCTACCTTTCATATTTTTTGTCCAGTGGTGCAAACTTGGGCAACATTTTTTTCTTCTTTTGATAAGAATCAAGTCACATCTTTCATTAGAAAAACATGGAATAGCACAACCTAAAGGACATAGTTAGTGATAAGGCGCCCCATCTCCAAACTGCTAGATATCATTTTGATATGTAAAAGTGTTAGATGATATAATATTAAATTTGCCTTTACCATCGGTTTAAGCTTTTGGGTCAATCGGTGATTTAACATGGTATCAGAGCAGGTTTAGGAGGTCTAGTGTTCAAATCCCTGCATCGTTGATGAGAGTGCTAAGGGGGTGTCAACATAGTTGAGATGTCTGGGTGCATTCCCTGATCCCTTGTCCTAATTTGATCATTTTGATCTTGTTTTCATGTTGTACTTTGAGATTTCGTCTCAATTCATTATATCAATGAAAGAGACATGTTTCCTTTTTTTTTTTTTAAAAAAAAACCCCTGCATTGTTGTTTCCTCCCCAATTAAAATTGATTTCCACTTGTTGGGTCTTCTTCATATTTCAAGTCCACAAGTGAAAATGAGTGTTAGATGATATAATATTAAATTTGCCTTCACTCATCAGCCTAAGCTTTTGGATCAATCGGTGATTTAACAAAAAATTGTTTATTTTGTTCATTTAGATGATAGTTCACATAGCTTTATTGAATGGTTTCGGTCTTTGAAAGGAACACATATATATAGTCGAAGTCACTTTTTATTTATTTATGATTATTATCTTTTTAATCTTTTTAGAAGGGAAACAATTTCATTGATAAATGAAATAAAAGAGGAAAAACTCCAAATCACCCAAAGGTGAAATTACATAAAGTTCTGCCAATGGAAAAATAAATAAGAAAGACTATAATCAGAAAAAGGCATGTAACGTTTACACCAATACAAAGCATAGGATAAAAAATGTTTAGTCTTCTCTGGTCACGAGCTAATGTGGAAGGAAATGTTGAAAGAACCTAAAAACTGCTAAATTCTCTTCCTCCTCTGCTACTCTTCATGTTTTGAATAATTAACTGCATGAACATTAGTTGCCTGCTTCATTTTCTCCTTGTACTCTTTTTTTTTTTTTTTTTTTGAAATGGAAACATAACTTTTCATTGAAATTATGAAATGAGACTAATGCTCAAATTTCATAAGAGGAAACTAAACATAAAGCTATCAATAGCCTGCCAGAAGAAGAAGAGAAAATCAAAACTAGATCAAGATAACAAATAAAAAGAGAAGAAAAAAACTTGACATGAAATACTTTGAGCATTTGTCTCTTTTCTTTTCATTACATCAATGAAAGGTTATGTTTCTGTTTCAAAAAAAAAAAGAAAACTTGACATGAAATGAGACTTCTTCTAGGTCCTAGGGCAGCTTGAATTCTGAAGAAACCAAAATCCAGCTCCTATCAACCAAACTTCAACCCTCTTTCAAACAAATAAGATCAAAATCTTCAAGAATATCAAAATTAAAATCCTTCTCAAAATGCAACGAAAGATATAAAGAAAGAAGGTTTATTTGGCCATGTGGGATGAAAGTAAGATCAATGTTGTTGAAGTGGAATCCTTTGAAAAATCGGGAGGTATTTTGGGATGAAAGTAATATCAATGTTGTTGAAGTACTTAAGGAGGGCTACTCATTATCTGTGAAATGCATAACCATGTGTAAAAAGTCTGTTGGCTTACAAATGTGTATGGTCCAACAGATTATTAAGAAAGAAGGTTTATTTGGCCAGAATTATCCTCTCTTGCTGATTATTGTTAAGATCCATGGTGCATTGGTGGGGATTTTAACATTACTAGATGGGCTCCTGAACGCTTTCCTTTTGGAAGAGTGACGAAAGCTATGAAAAAATTCAATAAATTCATTGAAATGGCTAGTCTGATGGAAGTGCCCCTTTCGAACAATCACTTTACTTGGTCCTGAGAAGGTAATGTGATCTCCCCCTCACTCATTGATAGATTTTTTGTCTCCAAAGAGTGGGACGATTTGTTTGAAAATACAAGAGTAACAAGGCAAGTCAGAACCTTCTTCGATCATTTTCCTCTACTGCTTGAAGCTAGAACTGTCTCATATCACCCTTTCGGTTTTGTAATAGTTGGCTGGAAAATAAAGAATGCTGTCGGGTTATTGAGAGATCTCTGAGTAATAACAGTTTCCAAGGGTGGGCTGGGTTCGTCATCAATTCCAGATTGAGAAGTGTTAAGAATTCCTTAAGGACTTGGCATGCTGAGTTTACAACTAAGCAGAAAAGAAAACAAGAAGCTTTGTTAAGAGAAATAGATGCTTGTGATGCTTTGGCTAAAACTTTAATCCACCCTCCTTAGAAATGGACATTCGAATCACCTTGAACGCAAAATTATTAAATATCTATAGGATGGATGAAAGGAATTTAATTCAGAAAAGCAAACTGAATTGGATTAGATTGGGGGACAAGAACACCAGCTTTTTCCATAGATTTTTAAGAGCTAAAAAAAGGATATTTTTAAGAGCTAAAAAAAGGAGAAGTCTGATTTTGGAATTGTATAATGAGCAAGGAAACCCTACTACTTCCTTTCGCGACATTGAAGGACTAATTCTGGGTTTTTATGAAAGACTAGTTGAAGTCAACTGGGATTTGAGTTTTACCATTCAATTTTGAATGGCCCTGTGTCACAACAATCCAAAATGCCATGCTTACTACACAGTTTTCAGCTGAAGAAATCCACAGAGCATTGAAGTTGCTTGGTAAGAATAAAGCACCCAGACCCGATGGGTTTATTGGGGAGTTTTTCCTTAAGTTTTGGGATCAATGCAAAGAGGATTTTATGAGCATGTTTGAGGACTTCTATGGCAATTGTAAACTGAATGCTTGTATCAAGGAAAACTTCATTTGCTTAATTCAGAAGAAGGAGGATGCACTCCTAGTTAAAGATTTTAAGGCCTATTAGCTTAACTACCTCTGTTTATAAGGTAGTTGCAAAAGTCCTTGCTGAAAGGTTAAAGAAGATCATGCAACCATCATGGGTTGACCTAGTGGTAAAAAAGGAGACAAAGTCTCAATAATTGGCTAAGAGGTCATGAGTTCAATCCATGGTGGCCACCTACCTAGGAATTAATTTCCTACGAGTTTCCTTGACACCTAAATGTTGTAGGATCATGCGGGTTGTCCCGTGAGATTAGTTGAGGTGCGCGTAAGCTGGCCCGGACACTCACGGATATAAAAAAAAAAAAAAGGTTAAAGAAGATCATGCCCAATATAATAGCTCCTACTTTGAGTGCATATATTGGAGGGAGACAGATACTTGACCCGGTTCTTATCGCAAATGAAGTTGTGGAAGATTATTGGATTAAGAAGAAAAAAGACTGGTTACTTAGATTAGATTTAGAAAAAGCCTTTGATTGTGTGGATTGGCTCTTCCTCGAAAAGATTTTAACGTGTAAAAAGTTCAATCATAAATGGATTACATGGATCATGGGTTGTGTCAAAGACCCAAGATTCTCAATTTTCATTAACGAAAGACCAAGAGGGAGAATTTTTGCATCAAGGGGCATTAGGCAAGGGGACCCCCTTTCACCTTTTTTATTCCTCCTAGTGAGTGAGGTGTTGAGTGCTCTAATTGCTAGAATATGAGAATGGGCTATTTGAAGGATTTGTTGTTGGAAAAGATAGGATTCGTGTCTCAATCCTCCAATTCGCTGATGACACTCTACTTTCTGTAAATATGATGACACCGCATGCTGGATAATTTAATAAAAACCATTGAGCTTTTTGAATGGTGCTTGGGCCAAAAGGTTAACTGGGAGAAATCAACATTGTATGGGGTTAATGTGGAGGAGGATAAGTTGCTGTATACTGCTTCTCGCTTGAACTATAAAGCCAATCACCTGCCATTCATGTACCTTGGGTTGCCTTTGGGGGGTTATCCTAGAAAGGTCTCTTTTTGGCAGCCAATTGTTGAGAAAATCCAGAAGAAGCTAGATAAATGGAAGAGATTCAACTTATCTCGTGGAGGGAGAGCTACTCTTTGTAAATCTATCATCTCTAATCTTCCCACTTATTATATATCTTCTTTTTTAATGCTGGAAAAGGTGATTCTAACCCTAGAAAGAATAATGAGGAACTTCTTCTGGGAGGGTTATAAAGGAAGCAAAATCAACCATTTGGTGAAGTGGAATCTGATCTCTAGATCACTTGAGGATGGGGTCTCGACTTTGGAAGCATAAAAGCTAGAAATTTGGCCTTATTAGCAAAATGGGGCTGGAGATATATGAACGAAGGAGGCTCTCTTTGGTGTCAAGTGGTTAGTAGCATTCATGGTAGAAATTCTTTTAATTGGCATACAGCTGGTAAGACCAATCTCAGTTTGAGAAGCCCCTGGATTAGTATTTTCAGATCTTGGGCAAAAAGTTGAAGCATTGGCTACCTTTAAACTTGGGAATGGTACTAGAATCGGCTTTTGGATTGACCATTGGATTGACTCTCTTCCCTTAAAATTGCGCTTTCCTAGGCTTTTTAGGATTGCACTTCATCCAAAGGGTTCAGTTGCTGACCTTTGGGAAACGACATCTTCCTCCTCGGCTGTTTTTTTCCGTTGATTGTTAAAGGAAGACGAAATTAGTGATTTCCAAAATCTCTTGCTGCTGTTGTCGGATGTCAGGGTAACAAGTATGGTAGATAGGCGTATTTGGTCGATAGAAGCCTCTGGGGCCTTTTTGGTGAAGTCCCTTACACACCATTTGTCACCTTCCTCACCTTTAGACCAACTGCTATATAAGGCATTATGGAAGTCTAGAAGCCTACGATGCACCAACATACTTATATGGATAATGATCTTTGGCCATTTGAACTGTTCCTTAGTATTGCAAAGAAAGCTTCCCACACATTGTTTGTCTCCCTCAGTTTGTCCTCTCTGTATGGCCGAGAAGGAAGATCTACAACATCTATTTTTTGATTGTGGCTATGCTAAGCGATGCTGGTGGAACCTTTTTTCCTTGTTCAATTTAGATTGGGTGTTCGGTGTTGAATTCCGAGATAATGTTACTCAATTATTGGTTGGTCCAGCTTTAAAGAAGAGATCCATGTTGATTTGGGTCAACGCGATTGAAGCATCGCTTGCTGAGCTTTGGTTTGAAAGAAACCAAAGGGTTTTTCATGACAATCCCTTGCTTGGTTGAATCGTTTTGAAGCTGCCCGTCTCAATGCCTCCTCTTGGTGCACTCTTTCTACAACCTTTGAGGATTACTCAATTCAAGATCATTGTCTAAATTGGAGGGCTTTTATTTCCCAAGAATAATGATCATTCAGCATAAGTGGGCATCCTTGAAGATGTTTTTGATTGTTTTGTTTGGTTGATTCTTAGTTTTGAAGTTGTATTTGCTATGTATTGTTAGAACTTAATATTTCTTTTGTGTTCCTTTGTCCTCCATTGTTGTTAGTTGGTTTATTTTATCCTCCGAATATGATGAGGGTGCTAAGATGGTGTCAACCTAGTTGAGATGCTAGGGTGCACCCGCTGATCCTTTAGCTCTTTGTACTAGTGTATCTCTTTTTGTACCTTGAGCATTAGTCTCATTTCATTATTTCGATGAAGAGGCTTGTTTTCATTTCAAAAAAAAAATCTCAAAATGCAATGAACTATAAAACCCACCCAAGCTACCAAAAGAACCACATAACTTAAGTAAACTTTCCAAACTCCACGGGTGGCAACTAAAGCTTTCCCCAAGATTATCGTGAACCAAGCCCAAGAAGCAAATAAACGTCCCATTTTTTTTTTTTTTTAAACGAAAACAGAATTTTTCATTGATATAATGAAAAGAGAAAAACTTAAATTACAAAGAGCCATGAACCAAATAGACTACTAAGGATCAGGAGATGCACCTATATATCTCAACTAGGTTGACACATCCTTAGCACCCTCATCATATCCAATACAAAACAAGATTTAAAAAATACAATAGTTCTAAAATATTTGATTACATAGAAGAAATAAAAACATTCCAGTCAGCAAATATCCTGAATAGAGTAATCTTCAAAGAGCATGGACTGCAAACTCCAAGAAGAAGTTAGAAAAGGAACTAAACCCCATCTGTCTGACCAATCCTTGGAATTATCATGAAAAACTCTCTGATTATGTTCAAACCAATCTTAGAAACTAGAGCTTTAACTGCATTTGACCATAAAATCTAAGCTCTAGAAGATAGAGAAGGACCAACCAAAAGATGAGAAATATTGTCCCTAACATTGTTCCCAAAAACCCACAGCAAACCGAAGATAGAAAACAAGTTCCACCAGCAATTTCTTGAGAAAGAACAATCAAATAACAAATGTTGCAAATCTTCTCCATAGGTTAAACGTCCCAAATTTTCTGAAATCTTAAAATGCGGTGAAAAGTATTTGTTGCAAGAACAACCAAATACCATATTCTCCTTGTACTCTTTCAACTTTAAGAAACTAATCCTAATCCTAATAAACCAAGAAAACTAATCCTAGTCTTAATATACCAAGGCAACTAATCTCTATCCTATTCAGTTAAAGATTTGACCAAAATAATCCAATTTACCCTAATCCTTAGTACATCACTCAATCAGACCTAAGCGCACTCTGGTACTCACAGAGATATGCAATATAATGCATGTGGATGAAGTTATCTTCCCTTTGTTTGCATGAAGACGAGTTTTAGAATTTATTTGATACATTTGCGAACTTAAAGGATGTTGACATCTTTTCCTAGTTATTGCTTGCAGGCAAAATAGTATTTACTGCTCCTTCTCGACCACTGGTCTTGCAACAGATAGAAGCATGCCATAATATTGTCGGAATACCACAAGTATGGCGGTAAACTCGTTTCTCAATGAAGTGGTTTGATGGATCAGTGGCCTTTCTCTAGATATCTATTATGTTAATTGGAACAATTTCAATGACTTTCTAATCAAACATGTTGCAGGAATGGACCATTGACATGACAGGGCTGATAAATCCGACAAAAAGAGCATGTTTTTGGAGAAGTAAAAGAGTTTTCTTTGTTACTCCACAAGTGCTAGAGAAGGATATTCAATCAGGTGGTTCTTTTGATCCTTAG

mRNA sequence

ATGGCGTTTGATATGTGTCCGATGGCTTCAACAAGTAATCGAGAATTCATTGTCGACGACGACGTAAATGCCGTCCTTCCTCTTTCTTGTTCTATGGCGTTTTATATATCTGAGTCCTTTGATCCTTCTCTCCCATTCCCTTTTCAGGATTTCGACTGGGAAGCAGCCGTCAAGGAAATTGATGTGGCCTGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCGACGCCTCTGCAGAAACCCCATCTTCATTTCCAATTTCCAAGGAGAATGAAAAACGCGGGACTTCTCGCCAGTCTACACTTCACAGATTTATCGTAAATCCAAATCCCAAGTCTCGAAAGAAAACACTGGACGTCGAACAACCGGTTCAAGATCCCGGCCTTGTTGAAGACACGGTTGGTCTTGTTGACATCGATGAGGAGGCAGCTAAGACTTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACCAAGACAGCACTATTTTCAAATACGTTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCCGAGGGCAAAATAGTATTTACTGCTCCTTCTCGACCACTGGTCTTGCAACAGATAGAAGCATGCCATAATATTGTCGGAATACCACAAGAATGGACCATTGACATGACAGGGCTGATAAATCCGACAAAAAGAGCATGTTTTTGGAGAAGTAAAAGAGTTTTCTTTGTTACTCCACAAGTGCTAGAGAAGGATATTCAATCAGGTGGTTCTTTTGATCCTTAG

Coding sequence (CDS)

ATGGCGTTTGATATGTGTCCGATGGCTTCAACAAGTAATCGAGAATTCATTGTCGACGACGACGTAAATGCCGTCCTTCCTCTTTCTTGTTCTATGGCGTTTTATATATCTGAGTCCTTTGATCCTTCTCTCCCATTCCCTTTTCAGGATTTCGACTGGGAAGCAGCCGTCAAGGAAATTGATGTGGCCTGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCGACGCCTCTGCAGAAACCCCATCTTCATTTCCAATTTCCAAGGAGAATGAAAAACGCGGGACTTCTCGCCAGTCTACACTTCACAGATTTATCGTAAATCCAAATCCCAAGTCTCGAAAGAAAACACTGGACGTCGAACAACCGGTTCAAGATCCCGGCCTTGTTGAAGACACGGTTGGTCTTGTTGACATCGATGAGGAGGCAGCTAAGACTTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACCAAGACAGCACTATTTTCAAATACGTTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCCGAGGGCAAAATAGTATTTACTGCTCCTTCTCGACCACTGGTCTTGCAACAGATAGAAGCATGCCATAATATTGTCGGAATACCACAAGAATGGACCATTGACATGACAGGGCTGATAAATCCGACAAAAAGAGCATGTTTTTGGAGAAGTAAAAGAGTTTTCTTTGTTACTCCACAAGTGCTAGAGAAGGATATTCAATCAGGTGGTTCTTTTGATCCTTAG

Protein sequence

MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEIDVACLSGIHSASSHSLHPSDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNPKSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSGGSFDP

Homology

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BLAST of Lsi11G010060.1 vs. ExPASy Swiss-Prot
Match: I3XHK1 (DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.0e-73
Identity = 151/223 (67.71%), Postives = 166/223 (74.44%), Query Frame = 0


Query: 50  DFDWEAAVKEIDVACLSGIHSASSHSLHPSDASAETP-SSFPISKENEKRGTSRQSTLHR 109
           +FDWEAAVKEID+ACL   +++SS S H       TP ++ PI+    K    RQSTL +
Sbjct: 15  EFDWEAAVKEIDLACLKTTNASSSSSSH------FTPLANPPITANLTKPPAKRQSTLDK 74

Query: 110 FIVNPNPKSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVN--VPLRDYQLAI 169
           FI     K     +  E  V D     D   LV ID EAAKTWIYPVN  VPLRDYQ AI
Sbjct: 75  FIGRTEHKPENHQVVSECGVND----NDNSPLVGIDPEAAKTWIYPVNGSVPLRDYQFAI 134

Query: 170 TKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIV 229
           TKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+GKIVF APSRPLV+QQIEACHNIV
Sbjct: 135 TKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIV 194

Query: 230 GIPQEWTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           GIPQEWTID+TG   P+KRA  W+SKRVFFVTPQVLEKDIQSG
Sbjct: 195 GIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSG 227

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BLAST of Lsi11G010060.1 vs. ExPASy Swiss-Prot
Match: Q8IYD8 (Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-40
Identity = 75/123 (60.98%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 147 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIV 206
           A   WIYP N P+RDYQL I++ ALF NTLV LPTGLGKT IAAVVMYN++RWFP GK+V
Sbjct: 79  AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 138

Query: 207 FTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDI 266
           F AP++PLV QQIEAC+ ++GIPQ    +MTG    + R   W SKRV F+TPQV+  D+
Sbjct: 139 FMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDL 198

Query: 267 QSG 270
             G
Sbjct: 199 SRG 201

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BLAST of Lsi11G010060.1 vs. ExPASy Swiss-Prot
Match: Q8BGE5 (Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3)

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-39
Identity = 73/123 (59.35%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 147 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIV 206
           A   WIYP N P+RDYQL I+++ALF NTLV LPTGLGKT IAAVVMYN++RWFP GK+V
Sbjct: 67  AGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 126

Query: 207 FTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDI 266
           F AP++PLV QQ+EAC +++GIPQ    +MTG      R   W S+RV F+TPQV+  D+
Sbjct: 127 FMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGSTQAVNRKEIWSSRRVLFLTPQVMVNDL 186

Query: 267 QSG 270
             G
Sbjct: 187 TRG 189

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BLAST of Lsi11G010060.1 vs. ExPASy Swiss-Prot
Match: Q9UT23 (ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 PE=1 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-38
Identity = 73/128 (57.03%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 142 DIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP 201
           ++DE AA+ W+YP+NV  RDYQ  I + ALF N LVALPTGLGKT IAAVVM NY RWFP
Sbjct: 56  ELDESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFP 115

Query: 202 EGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGLINPTKRACFWRSKRVFFVTPQV 261
           +  IVF AP++PLV QQ+EAC+ I GIP+  T +++G +  T R  +++S+ VFFVTPQ 
Sbjct: 116 KSYIVFMAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQT 175

Query: 262 LEKDIQSG 270
           +  DI+ G
Sbjct: 176 ILNDIKHG 183

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BLAST of Lsi11G010060.1 vs. ExPASy Swiss-Prot
Match: A4RN08 (ATP-dependent DNA helicase MPH1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MPH1 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-35
Identity = 84/191 (43.98%), Postives = 110/191 (57.59%), Query Frame = 0


Query: 80  DASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNPKSRKKTLDVEQPVQDPGLVEDTVG 139
           D S E   + PI     +  T +Q+TL   I +  P+    T      V    L  +   
Sbjct: 61  DYSPERERAKPIQTARNQARTFQQTTLLGRIASQAPEP-LGTQPRNSRVFRADLPPEVPT 120

Query: 140 LVDIDEEAAKTWIYPVNV-PLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFR 199
              +D EA KTW+YP N+ P+RDYQ +I K  LF+NTLVALPTGLGKT IAA V+ N+FR
Sbjct: 121 HHALDPEALKTWVYPTNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFR 180

Query: 200 WFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGLINPTKRACFWRSKRVFFVT 259
           W    ++VF AP++PL  QQ+EAC NI GIP+  +  +TG   P  R   W  KR+FF+T
Sbjct: 181 WTRNAQMVFVAPTKPLASQQVEACLNIAGIPRSQSTLLTGETKPVLREAEWEGKRLFFMT 240

Query: 260 PQVLEKDIQSG 270
           PQ L  D+  G
Sbjct: 241 PQTLMNDLSKG 250

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BLAST of Lsi11G010060.1 vs. ExPASy TrEMBL
Match: A0A5A7T298 (Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G001860 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.6e-115
Identity = 224/278 (80.58%), Postives = 235/278 (84.53%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIV----DDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAA 60
           MAF MCPMA+ SNREF V    DDDVNA                         DFDWEAA
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDDDVNA-------------------------DFDWEAA 60

Query: 61  VKEIDVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIV 120
           VKEIDVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+
Sbjct: 61  VKEIDVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM 120

Query: 121 NPNPKSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTAL 180
             N K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTAL
Sbjct: 121 --NAKFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTAL 180

Query: 181 FSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQE 240
           FSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQE
Sbjct: 181 FSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQE 240

Query: 241 WTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           WTIDMTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 WTIDMTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 250

[Close]

BLAST of Lsi11G010060.1 vs. ExPASy TrEMBL
Match: A0A1S3B3H7 (Fanconi anemia group M protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 220/274 (80.29%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEI 60
           MAF MCPMA+ SNREF VDD+ +                          DFDWEAAVKEI
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDD------------------------DDFDWEAAVKEI 60

Query: 61  DVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNP 120
           DVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+  N 
Sbjct: 61  DVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM--NA 120

Query: 121 KSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180
           K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT
Sbjct: 121 KFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180

Query: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240
           LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID
Sbjct: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240

Query: 241 MTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           MTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 MTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 247

[Close]

BLAST of Lsi11G010060.1 vs. ExPASy TrEMBL
Match: A0A1S4DTZ2 (Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 220/274 (80.29%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEI 60
           MAF MCPMA+ SNREF VDD+ +                          DFDWEAAVKEI
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDD------------------------DDFDWEAAVKEI 60

Query: 61  DVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNP 120
           DVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+  N 
Sbjct: 61  DVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM--NA 120

Query: 121 KSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180
           K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT
Sbjct: 121 KFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180

Query: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240
           LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID
Sbjct: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240

Query: 241 MTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           MTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 MTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 247

[Close]

BLAST of Lsi11G010060.1 vs. ExPASy TrEMBL
Match: A0A1S4DUR1 (Fanconi anemia group M protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 220/274 (80.29%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEI 60
           MAF MCPMA+ SNREF VDD+ +                          DFDWEAAVKEI
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDD------------------------DDFDWEAAVKEI 60

Query: 61  DVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNP 120
           DVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+  N 
Sbjct: 61  DVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM--NA 120

Query: 121 KSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180
           K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT
Sbjct: 121 KFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180

Query: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240
           LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID
Sbjct: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240

Query: 241 MTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           MTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 MTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 247

[Close]

BLAST of Lsi11G010060.1 vs. ExPASy TrEMBL
Match: A0A1S3B2A7 (Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 220/274 (80.29%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEI 60
           MAF MCPMA+ SNREF VDD+ +                          DFDWEAAVKEI
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDD------------------------DDFDWEAAVKEI 60

Query: 61  DVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNP 120
           DVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+  N 
Sbjct: 61  DVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM--NA 120

Query: 121 KSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180
           K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT
Sbjct: 121 KFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180

Query: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240
           LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID
Sbjct: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240

Query: 241 MTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           MTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 MTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 247

[Close]

BLAST of Lsi11G010060.1 vs. NCBI nr
Match: XP_038884538.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X4 [Benincasa hispida])

HSP 1 Score: 434.1 bits (1115), Expect = 8.9e-118
Identity = 225/270 (83.33%), Postives = 231/270 (85.56%), Query Frame = 0


Query: 5   MCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEIDVAC 64
           MC MASTSNREFIVDDD +                          DFDWEAAVKEIDVAC
Sbjct: 1   MCSMASTSNREFIVDDDDDD------------------------DDFDWEAAVKEIDVAC 60

Query: 65  LSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNPKSRK 124
           LSGIHSASSHSLHP     SDASAETP+SFP SK+NEKRGTSRQSTLHRFIVNP  KSRK
Sbjct: 61  LSGIHSASSHSLHPSLTASSDASAETPASFPSSKDNEKRGTSRQSTLHRFIVNPIAKSRK 120

Query: 125 KTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVAL 184
           KTLDVE+PVQDPGLVED+VGLV IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVAL
Sbjct: 121 KTLDVEEPVQDPGLVEDSVGLVGIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVAL 180

Query: 185 PTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGL 244
           PTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGL
Sbjct: 181 PTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTIDMTGL 240

Query: 245 INPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           INP KRA FW+SKRVFFVTPQVLEKDIQSG
Sbjct: 241 INPAKRAGFWKSKRVFFVTPQVLEKDIQSG 246

[Close]

BLAST of Lsi11G010060.1 vs. NCBI nr
Match: KAA0037083.1 (Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa])

HSP 1 Score: 424.9 bits (1091), Expect = 5.4e-115
Identity = 224/278 (80.58%), Postives = 235/278 (84.53%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIV----DDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAA 60
           MAF MCPMA+ SNREF V    DDDVNA                         DFDWEAA
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDDDVNA-------------------------DFDWEAA 60

Query: 61  VKEIDVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIV 120
           VKEIDVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+
Sbjct: 61  VKEIDVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM 120

Query: 121 NPNPKSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTAL 180
             N K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTAL
Sbjct: 121 --NAKFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTAL 180

Query: 181 FSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQE 240
           FSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQE
Sbjct: 181 FSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQE 240

Query: 241 WTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           WTIDMTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 WTIDMTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 250

[Close]

BLAST of Lsi11G010060.1 vs. NCBI nr
Match: XP_008441145.1 (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo])

HSP 1 Score: 422.2 bits (1084), Expect = 3.5e-114
Identity = 220/274 (80.29%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEI 60
           MAF MCPMA+ SNREF VDD+ +                          DFDWEAAVKEI
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDD------------------------DDFDWEAAVKEI 60

Query: 61  DVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNP 120
           DVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+  N 
Sbjct: 61  DVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM--NA 120

Query: 121 KSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180
           K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT
Sbjct: 121 KFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180

Query: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240
           LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID
Sbjct: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240

Query: 241 MTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           MTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 MTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 247

[Close]

BLAST of Lsi11G010060.1 vs. NCBI nr
Match: XP_016899456.1 (PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo])

HSP 1 Score: 422.2 bits (1084), Expect = 3.5e-114
Identity = 220/274 (80.29%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEI 60
           MAF MCPMA+ SNREF VDD+ +                          DFDWEAAVKEI
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDD------------------------DDFDWEAAVKEI 60

Query: 61  DVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNP 120
           DVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+  N 
Sbjct: 61  DVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM--NA 120

Query: 121 KSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180
           K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT
Sbjct: 121 KFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180

Query: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240
           LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID
Sbjct: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240

Query: 241 MTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           MTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 MTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 247

[Close]

BLAST of Lsi11G010060.1 vs. NCBI nr
Match: XP_008441146.1 (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis melo])

HSP 1 Score: 422.2 bits (1084), Expect = 3.5e-114
Identity = 220/274 (80.29%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 1   MAFDMCPMASTSNREFIVDDDVNAVLPLSCSMAFYISESFDPSLPFPFQDFDWEAAVKEI 60
           MAF MCPMA+ SNREF VDD+ +                          DFDWEAAVKEI
Sbjct: 1   MAFRMCPMAA-SNREFTVDDNDDD------------------------DDFDWEAAVKEI 60

Query: 61  DVACLSGIHSASSHSLHP-----SDASAETPSSFPISKENEKRGTSRQSTLHRFIVNPNP 120
           DVACLSGIHSASSHSLHP     SDA+AETP+SFP+S+ENEKRGTSRQSTLHRFI+  N 
Sbjct: 61  DVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIM--NA 120

Query: 121 KSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180
           K +KKT+DVE+PVQDPGLVED+VGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT
Sbjct: 121 KFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNT 180

Query: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240
           LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID
Sbjct: 181 LVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGIPQEWTID 240

Query: 241 MTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           MTG+INP KRA FWRSKRVFFVTPQVLEKDIQSG
Sbjct: 241 MTGMINPAKRASFWRSKRVFFVTPQVLEKDIQSG 247

[Close]

BLAST of Lsi11G010060.1 vs. TAIR 10
Match: AT1G35530.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-73
Identity = 149/221 (67.42%), Postives = 164/221 (74.21%), Query Frame = 0


Query: 50  DFDWEAAVKEIDVACLSGIHSASSHSLHPSDASAETP-SSFPISKENEKRGTSRQSTLHR 109
           +FDWEAAVKEID+ACL   +++SS S H       TP ++ PI+    K    RQSTL +
Sbjct: 15  EFDWEAAVKEIDLACLKTTNASSSSSSH------FTPLANPPITANLTKPPAKRQSTLDK 74

Query: 110 FIVNPNPKSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITK 169
           FI     K     +  E  V D     D   LV ID EAAKTWIYP  VPLRDYQ AITK
Sbjct: 75  FIGRTEHKPENHQVVSECGVND----NDNSPLVGIDPEAAKTWIYPGFVPLRDYQFAITK 134

Query: 170 TALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGI 229
           TALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+GKIVF APSRPLV+QQIEACHNIVGI
Sbjct: 135 TALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGI 194

Query: 230 PQEWTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           PQEWTID+TG   P+KRA  W+SKRVFFVTPQVLEKDIQSG
Sbjct: 195 PQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSG 225

[Close]

BLAST of Lsi11G010060.1 vs. TAIR 10
Match: AT1G35530.2 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-73
Identity = 149/221 (67.42%), Postives = 164/221 (74.21%), Query Frame = 0


Query: 50  DFDWEAAVKEIDVACLSGIHSASSHSLHPSDASAETP-SSFPISKENEKRGTSRQSTLHR 109
           +FDWEAAVKEID+ACL   +++SS S H       TP ++ PI+    K    RQSTL +
Sbjct: 15  EFDWEAAVKEIDLACLKTTNASSSSSSH------FTPLANPPITANLTKPPAKRQSTLDK 74

Query: 110 FIVNPNPKSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIYPVNVPLRDYQLAITK 169
           FI     K     +  E  V D     D   LV ID EAAKTWIYP  VPLRDYQ AITK
Sbjct: 75  FIGRTEHKPENHQVVSECGVND----NDNSPLVGIDPEAAKTWIYPGFVPLRDYQFAITK 134

Query: 170 TALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFTAPSRPLVLQQIEACHNIVGI 229
           TALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+GKIVF APSRPLV+QQIEACHNIVGI
Sbjct: 135 TALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGI 194

Query: 230 PQEWTIDMTGLINPTKRACFWRSKRVFFVTPQVLEKDIQSG 270
           PQEWTID+TG   P+KRA  W+SKRVFFVTPQVLEKDIQSG
Sbjct: 195 PQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSG 225

[Close]

BLAST of Lsi11G010060.1 vs. TAIR 10
Match: AT1G36020.1 (BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-09
Identity = 43/104 (41.35%), Postives = 52/104 (50.00%), Query Frame = 0


Query: 50  DFDWEAAVKEIDVACLSGIHSASSHSLHPSDASAETPSSFPISKENEKRGTSRQSTLHRF 109
           +FDWEAAVKEID+ACL       + + HP           PI++   K    RQSTL +F
Sbjct: 25  EFDWEAAVKEIDLACL------KTTNAHP-----------PITENLTKPPAKRQSTLDKF 84

Query: 110 IVNPNPKSRKKTLDVEQPVQDPGLVEDTVGLVDIDEEAAKTWIY 154
           I    PK     +  E    D     D   LV+ID EAAKTWIY
Sbjct: 85  IGRTEPKPENHQVVSECGGND----NDNSLLVEIDPEAAKTWIY 107

[Close]

BLAST of Lsi11G010060.1 vs. TAIR 10
Match: AT3G03300.1 (dicer-like 2 )

HSP 1 Score: 43.5 bits (101), Expect = 3.2e-04
Identity = 27/65 (41.54%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 160 RDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK---IVFTAPSRPLVL 219
           R YQ+   + A+  NT+V L TG GKTLIA +++ +Y   F +      VF  P   LV 
Sbjct: 25  RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQVVLVT 84

Query: 220 QQIEA 222
           QQ EA
Sbjct: 85  QQAEA 89

[Close]

BLAST of Lsi11G010060.1 vs. TAIR 10
Match: AT3G03300.3 (dicer-like 2 )

HSP 1 Score: 43.5 bits (101), Expect = 3.2e-04
Identity = 27/65 (41.54%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 160 RDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK---IVFTAPSRPLVL 219
           R YQ+   + A+  NT+V L TG GKTLIA +++ +Y   F +      VF  P   LV 
Sbjct: 25  RSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRKPSPCFCVFLVPQVVLVT 84

Query: 220 QQIEA 222
           QQ EA
Sbjct: 85  QQAEA 89

The following BLAST results are available for this feature:

BLAST of Lsi11G010060.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
I3XHK1	7.0e-73	67.71	DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FAN...	[more]
Q8IYD8	2.7e-40	60.98	Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2	[more]
Q8BGE5	1.3e-39	59.35	Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV...	[more]
Q9UT23	1.1e-38	57.03	ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
A4RN08	2.0e-35	43.98	ATP-dependent DNA helicase MPH1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4...	[more]

BLAST of Lsi11G010060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T298	2.6e-115	80.58	Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B3H7	1.7e-114	80.29	Fanconi anemia group M protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S4DTZ2	1.7e-114	80.29	Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S4DUR1	1.7e-114	80.29	Fanconi anemia group M protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S3B2A7	1.7e-114	80.29	Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]

BLAST of Lsi11G010060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884538.1	8.9e-118	83.33	DEAD-box ATP-dependent RNA helicase FANCM isoform X4 [Benincasa hispida]	[more]
KAA0037083.1	5.4e-115	80.58	Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa]	[more]
XP_008441145.1	3.5e-114	80.29	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]	[more]
XP_016899456.1	3.5e-114	80.29	PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo]	[more]
XP_008441146.1	3.5e-114	80.29	PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis melo]	[more]

BLAST of Lsi11G010060.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35530.1	1.1e-73	67.42	DEAD/DEAH box RNA helicase family protein	[more]
AT1G35530.2	1.1e-73	67.42	DEAD/DEAH box RNA helicase family protein	[more]
AT1G36020.1	4.3e-09	41.35	BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family pr...	[more]
AT3G03300.1	3.2e-04	41.54	dicer-like 2	[more]
AT3G03300.3	3.2e-04	41.54	dicer-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006935	Helicase/UvrB, N-terminal	PFAM	PF04851	ResIII	coord: 171..266 e-value: 3.5E-10 score: 40.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 160..269 e-value: 2.3E-34 score: 121.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 141..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..94
None	No IPR available	PANTHER	PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	coord: 50..269
IPR039686	FANCM/Mph1-like	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 50..269
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 166..274 score: 10.993214

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi11G010060	Lsi11G010060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G010060.1.exon.4	Lsi11G010060.1.exon.4	exon
Lsi11G010060.1.exon.3	Lsi11G010060.1.exon.3	exon
Lsi11G010060.1.exon.2	Lsi11G010060.1.exon.2	exon
Lsi11G010060.1.exon.1	Lsi11G010060.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi11G010060.1.CDS.4	Lsi11G010060.1.CDS.4	CDS
Lsi11G010060.1.CDS.3	Lsi11G010060.1.CDS.3	CDS
Lsi11G010060.1.CDS.2	Lsi11G010060.1.CDS.2	CDS
Lsi11G010060.1.CDS.1	Lsi11G010060.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi11G010060.1	Lsi11G010060.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0032508	DNA duplex unwinding
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity