Lsi06G000630.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G000630.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein of unknown function (DUF3511)
Locationchr06: 543462 .. 543827 (+)
Sequence length366
RNA-Seq ExpressionLsi06G000630.1
SyntenyLsi06G000630.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCCTCAACAACATAAAAAGCCTCAAAATTTCCAATTCCCACATTATCATCAAACAACGACGGGCGATGGAGATGGGGCGACGATACTCGGGAGTGGCGAGTTGCCGGAGCTCCGGTGGGATTGGGAACATGGGATTGGAAACGATTAAAGAAATCAGATCTCGGAAGGAACGAGTGGTTGAGGCAACGAAATCGTCAAAGAAATCATTGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGACGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAACTTAAGAATTCCATTAACAAAGGCTTCAAATGGATGAAGAACAAATGTGCTAAAATCATCTCTGGATTTTAA

mRNA sequence

ATGGATTCCCTCAACAACATAAAAAGCCTCAAAATTTCCAATTCCCACATTATCATCAAACAACGACGGGCGATGGAGATGGGGCGACGATACTCGGGAGTGGCGAGTTGCCGGAGCTCCGGTGGGATTGGGAACATGGGATTGGAAACGATTAAAGAAATCAGATCTCGGAAGGAACGAGTGGTTGAGGCAACGAAATCGTCAAAGAAATCATTGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGACGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAACTTAAGAATTCCATTAACAAAGGCTTCAAATGGATGAAGAACAAATGTGCTAAAATCATCTCTGGATTTTAA

Coding sequence (CDS)

ATGGATTCCCTCAACAACATAAAAAGCCTCAAAATTTCCAATTCCCACATTATCATCAAACAACGACGGGCGATGGAGATGGGGCGACGATACTCGGGAGTGGCGAGTTGCCGGAGCTCCGGTGGGATTGGGAACATGGGATTGGAAACGATTAAAGAAATCAGATCTCGGAAGGAACGAGTGGTTGAGGCAACGAAATCGTCAAAGAAATCATTGGAAAAATGGTGGAATGATCCAGAGAATAAGAGGAAAAGACGAGTGGCAAAATACAAATTCTATGCTGTGGATGCCAAACTTAAGAATTCCATTAACAAAGGCTTCAAATGGATGAAGAACAAATGTGCTAAAATCATCTCTGGATTTTAA

Protein sequence

MDSLNNIKSLKISNSHIIIKQRRAMEMGRRYSGVASCRSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISGF
Homology
BLAST of Lsi06G000630.1 vs. ExPASy TrEMBL
Match: A0A5D3CEU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004420 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 25  MEMGRRYSGVASCRSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEKWWNDPE-NKR 84
           ME  +R+SG  S +    +G   LETIKE+RSR+ERVVE TK  K+S++KWWN+ E NKR
Sbjct: 1   MEAAQRWSGATSGQRPRRMGT--LETIKEVRSRRERVVETTKMWKESVKKWWNNGEMNKR 60

Query: 85  K-RRVAKYKFYAVD-AKLKNSINKGFKWMK-NKCAKIISGF 122
           K  RVAKYKFY ++ +KLK SIN GFKWMK NK    +S F
Sbjct: 61  KGGRVAKYKFYCLNSSKLKVSINNGFKWMKINKSDNSVSSF 99

BLAST of Lsi06G000630.1 vs. ExPASy TrEMBL
Match: A0A0A0LYX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 67/129 (51.94%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 1   MDSLNNIKSLKISNSHII-------IKQRRAMEM----GRRYSGVASCRSSGGIGNMGLE 60
           MDSLNN   +  S +H         IKQ    +M     R+Y G A  +    +    LE
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRM-ETTLE 60

Query: 61  TIKEIRSRKERVVEATKSSKKSLEKWW-NDPENKRK-RRVAKYKFYAVD-AKLKNSINKG 115
           TIKEIRS +ERVVEATK  KKS++KWW N+ ENKRK  RVAKYK Y ++ +KLK SIN G
Sbjct: 61  TIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNG 120

BLAST of Lsi06G000630.1 vs. ExPASy TrEMBL
Match: A0A6J1DCB3 (uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019023 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 34/66 (51.52%), Postives = 52/66 (78.79%), Query Frame = 0

Query: 56  SRKERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCA 115
           ++++ + + ++SSK S++ WW +PE KR+RRVAKYK Y V+ K+KNSI KG KW K +C+
Sbjct: 45  TKRQAIKKPSESSKSSVKSWWKNPEMKRRRRVAKYKLYTVEGKVKNSIKKGIKWFKTRCS 104

Query: 116 KIISGF 122
           +I+SGF
Sbjct: 105 RIMSGF 110

BLAST of Lsi06G000630.1 vs. ExPASy TrEMBL
Match: A0A7J7D0P0 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G01113 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 58  KERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKI 117
           KER ++  KSS    + WWNDPE KRK+RV KYK YAV+ K+K+SI  G++W+K KC+K+
Sbjct: 52  KERNIKTHKSS--DTKSWWNDPEMKRKKRVVKYKLYAVEGKVKSSIKNGYRWLKRKCSKM 111

Query: 118 ISGF 122
           + GF
Sbjct: 112 VHGF 113

BLAST of Lsi06G000630.1 vs. ExPASy TrEMBL
Match: A0A151TW82 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010537 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 75  WWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIIS 120
           WWNDPENKRKRRVAKYK YA + KLK+S+ KG +W KNKC KI++
Sbjct: 65  WWNDPENKRKRRVAKYKLYAKEGKLKHSVKKGLRWFKNKCIKIVN 109

BLAST of Lsi06G000630.1 vs. NCBI nr
Match: KAG6588594.1 (hypothetical protein SDJN03_17159, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020542.1 hypothetical protein SDJN02_17228, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-21
Identity = 65/99 (65.66%), Postives = 74/99 (74.75%), Query Frame = 0

Query: 25  MEMGRRYSGVASC--RSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEKWWNDPENK 84
           ME GRR S  A+   RSSG +G+M  ETIKE RS K+RVVEA    KKS+EKWW   E K
Sbjct: 1   MEAGRRRSAAAAAGGRSSGFVGSM--ETIKERRSGKQRVVEA----KKSVEKWWKGSETK 60

Query: 85  RKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISGF 122
           RKRRVAKYKFYAV+ KLK SI KGF+W+K +CAKII GF
Sbjct: 61  RKRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 93

BLAST of Lsi06G000630.1 vs. NCBI nr
Match: KAG6588612.1 (hypothetical protein SDJN03_17177, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-21
Identity = 65/98 (66.33%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 25  MEMGRRYSGVAS-CRSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEKWWNDPENKR 84
           ME GRR S  A+  RSSG +G+M  ETIKE RS K+RVVEA    KKS+EKWW   E KR
Sbjct: 1   MEAGRRRSAAAAGGRSSGFVGSM--ETIKERRSGKQRVVEA----KKSVEKWWKGSETKR 60

Query: 85  KRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISGF 122
           KRRVAKYKFYAV+ KLK SI KGF+W+K +CAKII GF
Sbjct: 61  KRRVAKYKFYAVEGKLKRSITKGFQWIKKRCAKIIYGF 92

BLAST of Lsi06G000630.1 vs. NCBI nr
Match: KAA0050944.1 (hypothetical protein E6C27_scaffold761G00710 [Cucumis melo var. makuwa] >TYK10291.1 hypothetical protein E5676_scaffold16G004420 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-15
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 0

Query: 25  MEMGRRYSGVASCRSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEKWWNDPE-NKR 84
           ME  +R+SG  S +    +G   LETIKE+RSR+ERVVE TK  K+S++KWWN+ E NKR
Sbjct: 1   MEAAQRWSGATSGQRPRRMGT--LETIKEVRSRRERVVETTKMWKESVKKWWNNGEMNKR 60

Query: 85  K-RRVAKYKFYAVD-AKLKNSINKGFKWMK-NKCAKIISGF 122
           K  RVAKYKFY ++ +KLK SIN GFKWMK NK    +S F
Sbjct: 61  KGGRVAKYKFYCLNSSKLKVSINNGFKWMKINKSDNSVSSF 99

BLAST of Lsi06G000630.1 vs. NCBI nr
Match: KGN66017.1 (hypothetical protein Csa_007529 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-13
Identity = 67/129 (51.94%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 1   MDSLNNIKSLKISNSHII-------IKQRRAMEM----GRRYSGVASCRSSGGIGNMGLE 60
           MDSLNN   +  S +H         IKQ    +M     R+Y G A  +    +    LE
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRM-ETTLE 60

Query: 61  TIKEIRSRKERVVEATKSSKKSLEKWW-NDPENKRK-RRVAKYKFYAVD-AKLKNSINKG 115
           TIKEIRS +ERVVEATK  KKS++KWW N+ ENKRK  RVAKYK Y ++ +KLK SIN G
Sbjct: 61  TIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNG 120

BLAST of Lsi06G000630.1 vs. NCBI nr
Match: KAG7031408.1 (hypothetical protein SDJN02_05448, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-12
Identity = 34/64 (53.12%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 58  KERVVEATKSSKKSLEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKI 117
           K ++++ ++SSK+S   WW +P+ KR+RRVAKY+FY V+ K+K+SI KG KW+K KC++I
Sbjct: 49  KRQIIKTSESSKRSTRSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRI 108

Query: 118 ISGF 122
           I GF
Sbjct: 109 IFGF 112

BLAST of Lsi06G000630.1 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-12
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 56  SRKERVVEATKSSKKS--LEKWWNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNK 115
           S K+  V   +SS  S   + WWNDPE KRKRRVAKYK Y+ + K+K ++ K +KW+K +
Sbjct: 57  SYKDMPVRPRRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQ 116

Query: 116 CAKIISG 121
           C+KII G
Sbjct: 117 CSKIIHG 123

BLAST of Lsi06G000630.1 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 33/104 (31.73%), Postives = 50/104 (48.08%), Query Frame = 0

Query: 37  CRSSGGIGNMGLETIKEIRSRKERVVEATKSSKKSLEK-------------------WWN 96
           C    G    G++  KEI S K   +  T+    SL                       +
Sbjct: 7   CGYGSGQRTYGVDRRKEIVSGKRNQIYGTRDYPPSLPPPPGKVAAGRSNASSSLRIGGLS 66

Query: 97  DPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISGF 122
           D E KRK+R+A+YK Y V+ K+K+++  GF+W+KNKC +I+  F
Sbjct: 67  DAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

BLAST of Lsi06G000630.1 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.8 bits (120), Expect = 8.7e-07
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0

Query: 66  KSSKKSLEKWWN--DPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIIS 120
           K  + S    W   DP+ +RK+RV  Y+ Y V+ KLK S  K FKW+K+KC K+++
Sbjct: 61  KKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

BLAST of Lsi06G000630.1 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 78  DPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKNKCAKIISG 121
           D E KRK+R+A YK YA++ K+K+++ KGF W+K++ + II G
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

BLAST of Lsi06G000630.1 vs. TAIR 10
Match: AT3G13910.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 57  RKERVVEATKSSKKSLEKW-WNDPENKRKRRVAKYKFYAVDAKLKNSINKGFKWMKN 113
           + + V  A +++ +S   W ++DPE++RKRRVA YK Y+V+ K+K SI K FKW K+
Sbjct: 44  KSKSVPNADRAASRS---WSFSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFKD 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CEU14.0e-1557.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYX32.8e-1351.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1[more]
A0A6J1DCB33.1e-1251.52uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A7J7D0P02.0e-1154.69Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G01113 ... [more]
A0A151TW824.5e-1171.11Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010537 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6588594.12.0e-2165.66hypothetical protein SDJN03_17159, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588612.13.4e-2166.33hypothetical protein SDJN03_17177, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050944.18.2e-1557.43hypothetical protein E6C27_scaffold761G00710 [Cucumis melo var. makuwa] >TYK1029... [more]
KGN66017.15.9e-1351.94hypothetical protein Csa_007529 [Cucumis sativus][more]
KAG7031408.15.0e-1253.13hypothetical protein SDJN02_05448, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT3G05725.16.9e-1250.75Protein of unknown function (DUF3511) [more]
AT2G47480.11.8e-0731.73Protein of unknown function (DUF3511) [more]
AT2G19460.18.7e-0742.86Protein of unknown function (DUF3511) [more]
AT3G62640.11.5e-0648.84Protein of unknown function (DUF3511) [more]
AT3G13910.12.5e-0645.61Protein of unknown function (DUF3511) [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 76..120
e-value: 2.2E-21
score: 75.4
NoneNo IPR availablePANTHERPTHR33193:SF55DUF3511 DOMAIN PROTEINcoord: 41..121
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 41..121

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G000630Lsi06G000630gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G000630.1.exon.1Lsi06G000630.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G000630.1.CDS.1Lsi06G000630.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G000630.1Lsi06G000630.1-proteinpolypeptide