Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCATAACATAGTGAATTAGGTACCCAAGCATGGAAAGCTAATCAAAGTGGTGTGGTATATGCTCCATTGTCAATACATATGCTTTAAAACATCAAAATTAATTTTGAATTTACAAAATCTAAGAACTTGTTTGGTAGAGAATTTGAGTTACATTTTATCTTTTTTATATTCACTGAGTTCAGTAAATATGTGTTTGACGGCAGACAATCTAAATTTTGTTTCTGAAAACTGTTTTTCAGATTCTGTGATCCAAACAGTGCAAATAATGAAAAGAACATTTTTTTTTAATGTTTTCGTTGTACCTGAATTTTTTAATTTTAAAATTTAAAATGCAGAATTATATTAAATAAAGATAAATAAAATATTTAGAAATACAGTATGTCATGTTATAAACTTAATTTATTTTTGTAAAAAATAAGATATGTATTATAGATTACAAAATAATAATTATATACATTTTTTAATATAAATCATATCCATAAATAAATTAATAATAGTGTATTGTTAACTAAATATTAATGGGTAACTACGGACTCGTTTGGACTAGGAAAAAAAATGTTTTTAAAAAAAATCATTTTTATTTAAACTCTTTCAACAAAAATTGTTTAAAATATAATTTGAAAGTGTTTTGAGAGTGAATTTGAGCGGTTACCAAACACTTCAATTTTTTCTAAAATGACTTTTTAAAAAAAAAATTAGACATTTGAAAAGTTAAACTAAACACACCCTACAACTAGTTTTTTTATGATTTATGACTATAATATCAATAACATTTTAAACAATTGTTTAAATTAGAATCTAATTTTCTGAATCTACTACCAAACACACATTTGAAAACATAAAATACAACTCTGTTTTCATTGAATCTTATGCTTTCAAATCCTTGTTTTCAGATTTTCTACGAAACGATATTTTACCAATTAAGCCCTAAATTCTTCTATAATGTTTGTTGAACTAAAAAAAAATCTTCTGCTTTAGTTGACGAAATCTAAGTTCTTATCTAATTATATGATATTGCTAATTTCTTTAAATTAGAATGTTTCTTGTAATATCTACCTTCTTATATATTTTGTTTCTTTCCAAATGTATGTTTTTCACCACATACGCTCTCGTCTAAGTAAAATTTTCCTTTTTTTAAAAAAAAAAAAAAAATTGAGAATAGCTAAATCTTTATTTAAATAACACTATTATTTTAAGTGCATATTAGACCTTTTTTCTATCATATTAACATGATTAGTAGGAAATATTTGAAAACTTTTAATCAAAGATGGATGGAAGAAGAAAAAGAGATGAACACTCCCCTGATATCATTTGTCATAATTCAAAAAAGTATATATTACATAAATTTGTAGTTTCTCTAATTTGTTGCCTCCTCTCAACTTTTGGTAGTTAAAATCTGTAACTAATTTATTTTCCCTTTTCAATTTATTAATCTTGAACTTCTTGTATTTGTTGAGGTGAGATTTAAGTTACTAGCTATCATGATTTAAACTAAATGTATAAAAGTAAGTAAAACATGAAAAATTAAAATGTATAAACTAAAAGTAATTTAAATATAAAAACCAAATGCGTATAAATAAAAAGAAAATTACTATAAATAGAAAAAAAATATCAAACTATTTACAAATATAGAAAATTTTCACTGTCTATCACTAATAGATTACGAGGACAACAATAGAAGTCTATCACGGTCTATCAAATTTTTCTATATTTTGAAATAGTTTGATTCATTTTTCTATATTTAGAAACAACTCTAAATAAAATAACAAACTTAAAAACAAGAAGAAAAATAAATTAAAAAACTTACCTCACAAACTAGGAGAAGAAGTTGAAAAAGAAATTTAAAAAGTGAAGAATTATTGAACTTAAAGCTTTATAAAAAAATAAACAAAAATAAATCTAAAAGTAATTTAAAAATGAAGTTAAATAATCACTCCTGACTTTCTTCTTAATTTCTCGAACGATAAACATTTATTATTGGGCTAGCTAGAGTTTTTTTTAGTACAACAATTGCGGGAATGGGAGATCGAACCTCTCCCACTTTTAAGATGGACGATCATGCCAATTATCGCTGATTTAAGTTCACTTTGGCACATAAAGAGTATAAAGTTAAGGGGAGCTAGAGTTGAGGGAACACATTTACTATTGAGCTAGCTAGAGTTATTGTTATTAAGTTAGTCTTCTTTATATATAGTATTTAAAGAGCATAAAGTTGAGAGGAGCTCGAATCCCCCGAGCCCATACTATATCTGCCACTATATATATAATAAAAATCTTTATTTGTTGGTTACCAATTATGAGAGTGTGTATGTTACGTACCAACATGTTTGAAATATATTTATTTCATGGTATACCAACATGAAAATCTTATAAAACGTACTTAAACACATCATGTGGCTACACGTTCCACAAAACATAAATATATAATAATACAGGCCCTCTTTTCAAAATATTTATCATTTTTAATTACTTTTAAGTTCTTTATTTAAAATGTTTAAGAATCATTCCATGCATCTTAATTTGTAAAATTCTCAATAGCTTATTAATTTATTTTTTATTAATTTTATGTTTGAAATATATTTTAAGTATTAGACTTTGAAAGTTTGAAACTAAATTGACATATAAAGCCAATAGTTGAAAGGGTAAAAATACATTTTTTTTTTTCAAATTACAACTTGAAGAATAAGGTATTGAGAATAATTAGCAAAAATAACAAAACCTTGAAAATCTATATATTTTCAAGGCTTTGACATTGACTATATATTTTTCTTTTTCTTTGCTAATATTCTTGATAGAGACCAATTCAACTCTAAGTTTAACACCTTCACAAACCATTTACACATTTTACTACTTCTATGCTACTCGGTTAAGTAGAACTAATCAATAAATTATAACCTTTTTTATATAATTAATTTTTGTTTTTAAAAACACAAGTCTACTTCAAAGTCCAAACACACCAATTTATTTACTTTACAATGATTTACATCTTAAAATACTTCTCCAAGTTTTAATTCAATGATTAAGGTCCTGTTTATATTCCGGCGACTTAATTTAAAGCTTCACAAAAATATTAAAATGAGCAAAAAAAAAAAAAAAAAAAAAACCTTAGTTACAAGTCTAATTCATTAATTTTCAAAATTTGTGTTTTATAAATATTATTAAACTTTAAAAATGTCTAAAGACTTCTAAGATTTAAATTTTATGTCTAATAGATTCTTGACATATACGATTTCTTTTTTAAAAAATACTTCGTCTATAAGATATAAAATTCAATTTATGTCTAATAAAATTTAAAATTTGTGTTTAGTAGATCCATGAATTCTAAAAAATATCTAATAGTTGATGACTTATTATTACTCTATTAAATAGAAAAAAATCATAAATTTATTAGACAAAACATTGAAAGCGGGGTGGGAGAATCAAACCTTTGTCTTCGAGGTTGATAATACAAACACTATATCAATTAACCTATGTTCATTTTGGCTTAAGTTTACACTTTTTTAAGTTTATGGACCAAATAAATACAAGTTTTAAAATTTAGATACTAAACTTGTAATTTAATCCTGGAATTCTATCGCACTCTATCGCTGATATACAGTAGAATTTTTCTATATTTGTAAATAATTTGACTTATTTTTCTATATTTGAAAACAACTCCTTATTTAATATAAAAACACATTTAAAATGAAAGTACCTCAAATATTACTTTTGAAAAATACCAAAATTTCAAAATATCTTGAACCGTTTTTTATTGTTAACAAAATTTATCCCTTTCTATTCCAACATAGCTTTTTCAACTTTCAAACAAAGGCTTCGTCAAACTCATGTTTCGTAATTCATAGTAAAAACAAAACCCATGAAAAGTCTTAGTCAAATTGATCCTACCAAATCAAATACTTTTATTTTACTTTTATTTTTCTTAGTACTATTAATTTCAAATTAAGCATATATATAAATCACCAAATTAAATACCCCAAATGTATATATTTTCATTATTCTCAAAACAAAAAATTGGGTTAATTTTGAAAGGATTAAAGATGAGATTTTGTAAACAAAAACTCCTCTTTCTAAATCTGATTATGATCATAATTCTCTTAGTTTGTACACAAATTGAAGCGATGAGACCATTGAAAGAAGAACAATGGCCGAAGTTAATTTCTCAGTCACTGCAACGGGCGCCGGTGCCACCGTCGGGGCCGAACCCGTGTACAAATATTCCCGGACAAGGGAATGTTCCTTGTCAATAG
mRNA sequence
ATGGGGAAATATTTGAAAACTTTTAATCAAAGATGGATGGAAGAAGAAAAAGAGATGAACACTCCCCTGATATCATTTGTCATAATTCAAAAAATTTGTACACAAATTGAAGCGATGAGACCATTGAAAGAAGAACAATGGCCGAAGTTAATTTCTCAGTCACTGCAACGGGCGCCGGTGCCACCGTCGGGGCCGAACCCGTGTACAAATATTCCCGGACAAGGGAATGTTCCTTGTCAATAG
Coding sequence (CDS)
ATGGGGAAATATTTGAAAACTTTTAATCAAAGATGGATGGAAGAAGAAAAAGAGATGAACACTCCCCTGATATCATTTGTCATAATTCAAAAAATTTGTACACAAATTGAAGCGATGAGACCATTGAAAGAAGAACAATGGCCGAAGTTAATTTCTCAGTCACTGCAACGGGCGCCGGTGCCACCGTCGGGGCCGAACCCGTGTACAAATATTCCCGGACAAGGGAATGTTCCTTGTCAATAG
Protein sequence
MGKYLKTFNQRWMEEEKEMNTPLISFVIIQKICTQIEAMRPLKEEQWPKLISQSLQRAPVPPSGPNPCTNIPGQGNVPCQ
Homology
BLAST of Lsi05G009930.1 vs. ExPASy TrEMBL
Match:
A0A1Q3BFG1 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0
Query: 13 MEEEKEMNTPLISFVIIQKIC-TQIEAMRPLKEEQW--PKLISQSLQRAPVPPSGPNPCT 72
M K T +I ++ +C QI AMRPL+ EQW +++ QSLQR PV PSGPNPCT
Sbjct: 1 MGSHKNRCTSIILPMVTIVLCFQQILAMRPLEGEQWLEKRIVVQSLQRGPVTPSGPNPCT 60
Query: 73 NIPGQGNVPC 80
IPG+G C
Sbjct: 61 YIPGRGTGRC 70
BLAST of Lsi05G009930.1 vs. ExPASy TrEMBL
Match:
A0A5B6Z7Q1 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 0
Query: 23 LISFVIIQKIC-TQIEAMRPLKEEQWPK--LISQSLQRAPVPPSGPNPCTNIPGQGNVPC 80
++ F+I +C Q+ AMRPL+EEQW K L QSL R PVP SG NPCT IPG+G C
Sbjct: 48 ILIFIIFSVLCFRQLSAMRPLEEEQWLKKGLHIQSLPRGPVPSSGSNPCTYIPGRGTGRC 107
BLAST of Lsi05G009930.1 vs. ExPASy TrEMBL
Match:
M5VP99 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G228600 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 0
Query: 21 TPLISFVIIQKI---CTQIEAMRPLKEEQWPK-----LISQSLQRAPVPPSGPNPCTNIP 80
T L S +++ I C Q+ MR LK EQW K L+SQ L R PPSGPNPCT+IP
Sbjct: 8 TQLFSTLVVLLILFSCLQLGEMRHLKAEQWAKNHGLVLVSQYLARGQAPPSGPNPCTHIP 67
BLAST of Lsi05G009930.1 vs. ExPASy TrEMBL
Match:
A0A6J5Y6W4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51915 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 0
Query: 21 TPLISFVIIQKI---CTQIEAMRPLKEEQWPK-----LISQSLQRAPVPPSGPNPCTNIP 80
T L S +++ I C Q+ MR LK EQW K L+SQ L R PPSGPNPCT+IP
Sbjct: 8 TQLFSTLVVLLILFSCLQLGEMRHLKAEQWAKNHGLALVSQYLARGKAPPSGPNPCTHIP 67
BLAST of Lsi05G009930.1 vs. ExPASy TrEMBL
Match:
V4KY87 (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009900mg PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
Query: 13 MEEEKEMNTPLISFVIIQKICTQIEAMRPLKEEQWPKLISQSLQRAPVPPSGPNPCTNIP 72
M+ + + L+ F++I TQ+EA RP + + + + Q LQR PVPPSGPN CTNIP
Sbjct: 2 MKRQLILGVVLLGFLVIFLDTTQVEATRPFRADGEIRFVFQLLQRGPVPPSGPNGCTNIP 61
Query: 73 G 74
G
Sbjct: 62 G 62
BLAST of Lsi05G009930.1 vs. NCBI nr
Match:
GAV66766.1 (hypothetical protein CFOL_v3_10276 [Cephalotus follicularis])
HSP 1 Score: 61.6 bits (148), Expect = 3.5e-06
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0
Query: 13 MEEEKEMNTPLISFVIIQKIC-TQIEAMRPLKEEQW--PKLISQSLQRAPVPPSGPNPCT 72
M K T +I ++ +C QI AMRPL+ EQW +++ QSLQR PV PSGPNPCT
Sbjct: 1 MGSHKNRCTSIILPMVTIVLCFQQILAMRPLEGEQWLEKRIVVQSLQRGPVTPSGPNPCT 60
Query: 73 NIPGQGNVPC 80
IPG+G C
Sbjct: 61 YIPGRGTGRC 70
BLAST of Lsi05G009930.1 vs. NCBI nr
Match:
ONH93371.1 (hypothetical protein PRUPE_8G228600 [Prunus persica])
HSP 1 Score: 58.5 bits (140), Expect = 3.0e-05
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 0
Query: 21 TPLISFVIIQKI---CTQIEAMRPLKEEQWPK-----LISQSLQRAPVPPSGPNPCTNIP 80
T L S +++ I C Q+ MR LK EQW K L+SQ L R PPSGPNPCT+IP
Sbjct: 8 TQLFSTLVVLLILFSCLQLGEMRHLKAEQWAKNHGLVLVSQYLARGQAPPSGPNPCTHIP 67
BLAST of Lsi05G009930.1 vs. NCBI nr
Match:
CAB4291562.1 (unnamed protein product [Prunus armeniaca] >CAB4321876.1 unnamed protein product [Prunus armeniaca])
HSP 1 Score: 58.5 bits (140), Expect = 3.0e-05
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 0
Query: 21 TPLISFVIIQKI---CTQIEAMRPLKEEQWPK-----LISQSLQRAPVPPSGPNPCTNIP 80
T L S +++ I C Q+ MR LK EQW K L+SQ L R PPSGPNPCT+IP
Sbjct: 8 TQLFSTLVVLLILFSCLQLGEMRHLKAEQWAKNHGLALVSQYLARGKAPPSGPNPCTHIP 67
BLAST of Lsi05G009930.1 vs. NCBI nr
Match:
XP_006417956.1 (uncharacterized protein LOC18994259 [Eutrema salsugineum] >ESQ36309.1 hypothetical protein EUTSA_v10009900mg [Eutrema salsugineum])
HSP 1 Score: 57.8 bits (138), Expect = 5.1e-05
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
Query: 13 MEEEKEMNTPLISFVIIQKICTQIEAMRPLKEEQWPKLISQSLQRAPVPPSGPNPCTNIP 72
M+ + + L+ F++I TQ+EA RP + + + + Q LQR PVPPSGPN CTNIP
Sbjct: 2 MKRQLILGVVLLGFLVIFLDTTQVEATRPFRADGEIRFVFQLLQRGPVPPSGPNGCTNIP 61
Query: 73 G 74
G
Sbjct: 62 G 62
BLAST of Lsi05G009930.1 vs. NCBI nr
Match:
CAA3005161.1 (Hypothetical predicted protein [Olea europaea subsp. europaea])
HSP 1 Score: 57.8 bits (138), Expect = 5.1e-05
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0
Query: 19 MNTPLISFVIIQKICTQIEAMRPLKEEQWPK--LISQSLQRAPVPPSGPNPCTNIPGQG 76
+N I + I +++ A+RPL+ EQW K L+ QSL R P+PPSG NPCT IPG+G
Sbjct: 9 INIIFIFSIFFLLISSKVRAIRPLEGEQWQKRTLVIQSLPRGPIPPSGGNPCTYIPGRG 67
BLAST of Lsi05G009930.1 vs. TAIR 10
Match:
AT1G06137.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0
Query: 13 MEEEKEMNTPLISFVIIQKICTQIEAMRPLKEEQWPKLISQSLQRAPVPPSGPNPCTNIP 72
M+++ + L+ +I TQ+EA RPL+ + + + Q LQR V SGPN CTNIP
Sbjct: 1 MKKQLILGVILLGLFVIFLNTTQVEAARPLQADSEIRFVFQLLQRGQVIGSGPNGCTNIP 60
Query: 73 GQGNVPCQ 81
G G+ C+
Sbjct: 61 G-GSGTCR 67
BLAST of Lsi05G009930.1 vs. TAIR 10
Match:
AT1G06135.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31345.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 0
Query: 23 LISFVIIQKICTQIEAMRPL-KEEQWPKLISQSLQRAPVPPSGPNPCTNIP 73
L++F ++ Q+EAMRP + + Q+LQR PV SGPN CTNIP
Sbjct: 11 LVAFFVVFLDVKQVEAMRPFPTAADEIRFVFQALQRGPVSGSGPNGCTNIP 61
BLAST of Lsi05G009930.1 vs. TAIR 10
Match:
AT2G31345.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 40.4 bits (93), Expect = 7.8e-04
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 0
Query: 13 MEEEKEMNTPLISFVIIQKICTQIEAMRPLKEE-QWPKLISQSLQRAPVPPSGPNPCTNI 72
M+++ + L+ ++ TQ+EAMRP + +L+ Q+LQR PV SG N CTNI
Sbjct: 2 MKKQLVVVVMLVVMFVVFLDATQVEAMRPFPDPVDEIRLLFQALQRGPVRGSGRNGCTNI 61
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1Q3BFG1 | 1.7e-06 | 50.00 | Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4... | [more] |
A0A5B6Z7Q1 | 2.9e-06 | 55.00 | Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663... | [more] |
M5VP99 | 1.4e-05 | 49.25 | Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G228600 PE=4 SV=1 | [more] |
A0A6J5Y6W4 | 1.4e-05 | 49.25 | Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51915 PE=4 S... | [more] |
V4KY87 | 2.5e-05 | 45.90 | Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009900mg PE=... | [more] |
Match Name | E-value | Identity | Description | |
GAV66766.1 | 3.5e-06 | 50.00 | hypothetical protein CFOL_v3_10276 [Cephalotus follicularis] | [more] |
ONH93371.1 | 3.0e-05 | 49.25 | hypothetical protein PRUPE_8G228600 [Prunus persica] | [more] |
CAB4291562.1 | 3.0e-05 | 49.25 | unnamed protein product [Prunus armeniaca] >CAB4321876.1 unnamed protein product... | [more] |
XP_006417956.1 | 5.1e-05 | 45.90 | uncharacterized protein LOC18994259 [Eutrema salsugineum] >ESQ36309.1 hypothetic... | [more] |
CAA3005161.1 | 5.1e-05 | 49.15 | Hypothetical predicted protein [Olea europaea subsp. europaea] | [more] |
Match Name | E-value | Identity | Description | |
AT1G06137.1 | 1.4e-05 | 39.71 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT1G06135.1 | 2.1e-04 | 45.10 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT2G31345.1 | 7.8e-04 | 39.34 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |