Lsi02G010310.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G010310.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Peptidylprolyl isomerase
Location	chr02: 10868696 .. 10871388 (-)
Sequence length	578
RNA-Seq Expression	Lsi02G010310.1
Synteny	Lsi02G010310.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTTCCTCTCCCTTCCACCTTCTATTTCATGTCTTTCGAATCCCATTATCCTCTCCTTCCTGTAATTTCTCCACCCACTAGAAGGTCTCTCTCTCTGCACTTATCTCCACCGCCATTTCAACCTTCCTCTCCTCCTCTCTCGTCACTCCTTCCAAATCTGTCGCACCGAATTTCTTCCAGCTCCGGGACTCGGTCGGCGTCAAGGCGTTGGAGCTTCGCATTGGCTCAGGGGAAACCCCCCTCGACGGAGACCAGGTGATTTGATTTCGAAATTCATTGGGAGTGCAACAGGAATGACATTTTTTTTGTTGTTCTTCTGTTAATTAGCTTATTTCTAATCAATCGATTAATTAGTAATGAACTTCTAAATCTACTGGGGATAAGAATTTTTTAGGTTTCTCTGATGCATTTGTTATTGTTAAGGATATACCATTCTTAAAAGACTCTTAAAACGTTTAGAGGATATGATATTTTTTTTGTCGTATTTGTAATTCTCGGAGACATCTATCAGGCTTGGGTGATTGATCATTCCCCGAAAAAATTGATAGCAACTGCAATCTTTTCTTGAAAAGGTCGTTCCAATAGGATTTCAATCTAAACTAAACTAATTAGTTATCATCTGCCACCTAGTTTTTTACTGTAGAGCTTTCTGAAAAATCCGTTGATTTCATCATCTTCAATCTCCTTGTCTCTGACTAAAACCTGCCCATATAAGGTATTAATGTTATTGATTCTGTTTTTCCTCTCCTATAGGTCGTAATTTTATGGAGGAATCTTGTGTTTTCATCGCCTTCGTTAAGGCAATCATTTTTGGATTTTTTTTGTCCACTTCTGACTTCTATGTTGTTCAAGTCCAAATTCTAGAATTCTAATAGGTATTTTTTCCCTCAGTATATATATACCTGTTAAGTGTCCGGGCTAACTTACGTGTACCTCGACTAACTTCACGGGACAACTTGTCCGATCCTACAACATTTGGGTGTTAAGAAAACTCTTAAGATATTAAATTTTAGGTAGGTGACTATCATGGATTGTGCCCATGACTAAGGGCATGCCTCCTATTCCTTTGATTTCTTTTTTTTTTCCCCCAAAAAGTACTTTTGTTCCAATTTTAAATATTTGACTTCATTTACTTGAGCTTCTGACATAATGAATTACCATCCTTCTTCACCATGGACCTAAATTCAGTCCTTCTTTCGTTTCTATTTTAAGAAATTAGAAGAAGCTCAAAGAATTTAATGGAGGTACAATGATGGAAACGCTTCTCAAATTGGTTGTAGCCCCACATTTATAAGTAACCACTGAAAAGGAGGCTAGGGATAGCATAGCATTAGCTTGCTACTTCTTGGCCGATTTACCAACTTTCTCATGCCCACAACCTCTTGATTTGAGCCTCAAAGAAGACTTAACTGACAAGACACCACTGTGAGTTGAACTCCTTAACTCCCTTTTTTTGCCTTGTAGGTTACAAACAATGGACACCCCTTTTTCATCATTTTATCATGCCGAGTGAGAAAGCTTACTTTTAGACTCACAAATTCCTCAATCGTGCGTTTGACTAATGATGAATATTGTAACCACTGGGTGTACTAGTGAAGAGTCATTTAATCTTCTTTCTAAGGCTGCTTTTGATTAACATTGTGGTGGCCTACTTTCTTCCCTTGATGACTCTTACAAGTCAGAAATACGTGGAACTAAAGGAAAAAGGAACGGGAACATTTAGAGGTTTTGTTTTGTTTTTTTTTAATGGATGACCCAAATCTAGTTTGGTTAAGGTCAAATTACCCAGATTCTAAAAATAATGAAAACTAACTTTTTGCTTATGTCACAAAGCACCATCCAACGTTAAATTCTCTTTAGAGCCATTTGCGGTTATGGGTTCGCATCCATCGTGAACTGATGAGACCCATAACGCAATTTCAAGGCGCATCGCGACTTTTATAAAAAATACAAATTATCTCCTATTATTAAAATTTTTTGCGATCTTATGACTTTTTCCGAACCTGAAATAGCGTTCAGGGTCATCAATTCGCGATGGATGAGAACCTGCAATCACAAATGGACGATTTAATGTTGGTCATTGATTTCTGAAGTAAGCAAAAGGTTAATTTTCATTATCTTTAGAATCCAGGTCATTTGACATTAGCACAACTAAATTTGGTCATCCTTACAAAAATCTCTTATATTTTCTGTTCTTCTTAAAATTTTGATATATATATATATATACCAAATAATTAAGTTTTAATTTTGCCTTATGACTTTTTGTAATTGAAAAATTATTTGCATAAAAAATTGGAGGGTAAAATTTTGCCCCTCCTTTGAAAAAATTCTAGCTATGCCCTGTGTGCAAATTTTATTATTTTCTTCATTCCTCTATTGTGATTATTTCGTAGAGTTGGCTATTCGTTTGTATGCGAGTCATTAAAGTTGATTGGACTAACAAGAAGCTTGTAAGCATTGGGGTAAATTTTATTACTCGAGTATGAAATCCATATCATATTCTTAATATGGAGTATATTAACGTGAAGGTTGCAGTTCATTATTATGGAAGGTTAGCAGCAAAGCAGGGATGGCGCTTTGACACAACATATGATCACAAAGATGAAAATGGGGAGCCCCTTCCTTTCATATTTGTTCTTGGCTCTGGGAAAGTAAGTCAATTGTTGTTGATATCCTACCATTCTACCTAA

mRNA sequence

ATTATTTCCTCTCCCTTCCACCTTCTATTTCATGTCTTTCGAATCCCATTATCCTCTCCTTCCTGTAATTTCTCCACCCACTAGAAGGTCTCTCTCTCTGCACTTATCTCCACCGCCATTTCAACCTTCCTCTCCTCCTCTCTCGTCACTCCTTCCAAATCTGTCGCACCGAATTTCTTCCAGCTCCGGGACTCGGTCGGCGTCAAGGCGTTGGAGCTTCGCATTGGCTCAGGGGAAACCCCCCTCGACGGAGACCAGGTCGTAATTTTATGGAGGAATCTTGTGTTTTCATCGCCTTCGTTAAGGCAATCATTTTTGGATTTTTTTTGTCCACTTCTGACTTCTATGTTGTTCAAGTTACAAACAATGGACACCCCTTTTTCATCATTTTATCATGCCGATATATTAACGTGAAGGTTGCAGTTCATTATTATGGAAGGTTAGCAGCAAAGCAGGGATGGCGCTTTGACACAACATATGATCACAAAGATGAAAATGGGGAGCCCCTTCCTTTCATATTTGTTCTTGGCTCTGGGAAAGTAAGTCAATTGTTGTTGATATCCTACCATTCTACCTAA

Coding sequence (CDS)

ATGGAGGAATCTTGTGTTTTCATCGCCTTCGTTAAGGCAATCATTTTTGGATTTTTTTTGTCCACTTCTGACTTCTATGTTGTTCAAGTTACAAACAATGGACACCCCTTTTTCATCATTTTATCATGCCGATATATTAACGTGAAGGTTGCAGTTCATTATTATGGAAGGTTAGCAGCAAAGCAGGGATGGCGCTTTGACACAACATATGATCACAAAGATGAAAATGGGGAGCCCCTTCCTTTCATATTTGTTCTTGGCTCTGGGAAAGTAAGTCAATTGTTGTTGATATCCTACCATTCTACCTAA

Protein sequence

MEESCVFIAFVKAIIFGFFLSTSDFYVVQVTNNGHPFFIILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKVSQLLLISYHST

Homology

[Close]

BLAST of Lsi02G010310.1 vs. ExPASy Swiss-Prot
Match: O81864 (Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP17-1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-15
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 49  KVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           ++ +HYYGRLAAKQGWRFD+TYDHKD NGE +PF FVLGS KV
Sbjct: 107 QIEIHYYGRLAAKQGWRFDSTYDHKDSNGEAVPFTFVLGSSKV 149

[Close]

BLAST of Lsi02G010310.1 vs. ExPASy TrEMBL
Match: A0A5A7TKB7 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G001330 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.2e-18
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]

BLAST of Lsi02G010310.1 vs. ExPASy TrEMBL
Match: A0A5D3E097 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00180 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.2e-18
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]

BLAST of Lsi02G010310.1 vs. ExPASy TrEMBL
Match: A0A1S3C9V7 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]

BLAST of Lsi02G010310.1 vs. ExPASy TrEMBL
Match: A0A1S3C9F0 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]

BLAST of Lsi02G010310.1 vs. ExPASy TrEMBL
Match: A0A6J1KH10 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111495682 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.2e-16
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 49  KVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           +VAVHYYGRLAAKQGWRFDTTYDHKDENGEP+PF FVLGSGKV
Sbjct: 102 QVAVHYYGRLAAKQGWRFDTTYDHKDENGEPIPFTFVLGSGKV 144

[Close]

BLAST of Lsi02G010310.1 vs. NCBI nr
Match: KAG7019423.1 (Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-18
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 46  INVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           INVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEP+PF FVLGSGKV
Sbjct: 107 INVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPIPFTFVLGSGKV 152

[Close]

BLAST of Lsi02G010310.1 vs. NCBI nr
Match: KAA0043248.1 (peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]

BLAST of Lsi02G010310.1 vs. NCBI nr
Match: TYK29312.1 (peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]

BLAST of Lsi02G010310.1 vs. NCBI nr
Match: XP_008459060.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]

BLAST of Lsi02G010310.1 vs. NCBI nr
Match: XP_008459062.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isoform X3 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]

BLAST of Lsi02G010310.1 vs. TAIR 10
Match: AT4G19830.1 (FKBP-like peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-16
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 49  KVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           ++ +HYYGRLAAKQGWRFD+TYDHKD NGE +PF FVLGS KV
Sbjct: 107 QIEIHYYGRLAAKQGWRFDSTYDHKDSNGEAVPFTFVLGSSKV 149

The following BLAST results are available for this feature:

BLAST of Lsi02G010310.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81864	5.5e-15	76.74	Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Lsi02G010310.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKB7	7.2e-18	76.19	Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3E097	7.2e-18	76.19	Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3C9V7	1.2e-17	86.54	Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1	[more]
A0A1S3C9F0	1.2e-17	86.54	Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1	[more]
A0A6J1KH10	5.2e-16	93.02	Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111495682 PE=4 SV=1	[more]

BLAST of Lsi02G010310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019423.1	8.7e-18	95.65	Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic, partial [Cucurbita ...	[more]
KAA0043248.1	1.5e-17	76.19	peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa]	[more]
TYK29312.1	1.5e-17	76.19	peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa]	[more]
XP_008459060.1	2.5e-17	86.54	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isof...	[more]
XP_008459062.1	2.5e-17	86.54	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isof...	[more]

BLAST of Lsi02G010310.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19830.1	3.9e-16	76.74	FKBP-like peptidyl-prolyl cis-trans isomerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.50.40		coord: 47..96 e-value: 3.9E-6 score: 28.8
IPR044197	Peptidyl-prolyl cis-trans isomerase FKBP17-1-like	PANTHER	PTHR47860	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-1, CHLOROPLASTIC	coord: 49..91
IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	PROSITE	PS50059	FKBP_PPIASE	coord: 47..102 score: 9.135663

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi02G010310	Lsi02G010310	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G010310.1.exon.4	Lsi02G010310.1.exon.4	exon
Lsi02G010310.1.exon.3	Lsi02G010310.1.exon.3	exon
Lsi02G010310.1.exon.2	Lsi02G010310.1.exon.2	exon
Lsi02G010310.1.exon.1	Lsi02G010310.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G010310.1.CDS.3	Lsi02G010310.1.CDS.3	CDS
Lsi02G010310.1.CDS.2	Lsi02G010310.1.CDS.2	CDS
Lsi02G010310.1.CDS.1	Lsi02G010310.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi02G010310.1.five_prime_UTR.2	Lsi02G010310.1.five_prime_UTR.2	five_prime_UTR
Lsi02G010310.1.five_prime_UTR.1	Lsi02G010310.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi02G010310.1	Lsi02G010310.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity