Lsi02G010310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G010310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPeptidylprolyl isomerase
Locationchr02: 10868696 .. 10871388 (-)
RNA-Seq ExpressionLsi02G010310
SyntenyLsi02G010310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATTTCCTCTCCCTTCCACCTTCTATTTCATGTCTTTCGAATCCCATTATCCTCTCCTTCCTGTAATTTCTCCACCCACTAGAAGGTCTCTCTCTCTGCACTTATCTCCACCGCCATTTCAACCTTCCTCTCCTCCTCTCTCGTCACTCCTTCCAAATCTGTCGCACCGAATTTCTTCCAGCTCCGGGACTCGGTCGGCGTCAAGGCGTTGGAGCTTCGCATTGGCTCAGGGGAAACCCCCCTCGACGGAGACCAGGTGATTTGATTTCGAAATTCATTGGGAGTGCAACAGGAATGACATTTTTTTTGTTGTTCTTCTGTTAATTAGCTTATTTCTAATCAATCGATTAATTAGTAATGAACTTCTAAATCTACTGGGGATAAGAATTTTTTAGGTTTCTCTGATGCATTTGTTATTGTTAAGGATATACCATTCTTAAAAGACTCTTAAAACGTTTAGAGGATATGATATTTTTTTTGTCGTATTTGTAATTCTCGGAGACATCTATCAGGCTTGGGTGATTGATCATTCCCCGAAAAAATTGATAGCAACTGCAATCTTTTCTTGAAAAGGTCGTTCCAATAGGATTTCAATCTAAACTAAACTAATTAGTTATCATCTGCCACCTAGTTTTTTACTGTAGAGCTTTCTGAAAAATCCGTTGATTTCATCATCTTCAATCTCCTTGTCTCTGACTAAAACCTGCCCATATAAGGTATTAATGTTATTGATTCTGTTTTTCCTCTCCTATAGGTCGTAATTTTATGGAGGAATCTTGTGTTTTCATCGCCTTCGTTAAGGCAATCATTTTTGGATTTTTTTTGTCCACTTCTGACTTCTATGTTGTTCAAGTCCAAATTCTAGAATTCTAATAGGTATTTTTTCCCTCAGTATATATATACCTGTTAAGTGTCCGGGCTAACTTACGTGTACCTCGACTAACTTCACGGGACAACTTGTCCGATCCTACAACATTTGGGTGTTAAGAAAACTCTTAAGATATTAAATTTTAGGTAGGTGACTATCATGGATTGTGCCCATGACTAAGGGCATGCCTCCTATTCCTTTGATTTCTTTTTTTTTTCCCCCAAAAAGTACTTTTGTTCCAATTTTAAATATTTGACTTCATTTACTTGAGCTTCTGACATAATGAATTACCATCCTTCTTCACCATGGACCTAAATTCAGTCCTTCTTTCGTTTCTATTTTAAGAAATTAGAAGAAGCTCAAAGAATTTAATGGAGGTACAATGATGGAAACGCTTCTCAAATTGGTTGTAGCCCCACATTTATAAGTAACCACTGAAAAGGAGGCTAGGGATAGCATAGCATTAGCTTGCTACTTCTTGGCCGATTTACCAACTTTCTCATGCCCACAACCTCTTGATTTGAGCCTCAAAGAAGACTTAACTGACAAGACACCACTGTGAGTTGAACTCCTTAACTCCCTTTTTTTGCCTTGTAGGTTACAAACAATGGACACCCCTTTTTCATCATTTTATCATGCCGAGTGAGAAAGCTTACTTTTAGACTCACAAATTCCTCAATCGTGCGTTTGACTAATGATGAATATTGTAACCACTGGGTGTACTAGTGAAGAGTCATTTAATCTTCTTTCTAAGGCTGCTTTTGATTAACATTGTGGTGGCCTACTTTCTTCCCTTGATGACTCTTACAAGTCAGAAATACGTGGAACTAAAGGAAAAAGGAACGGGAACATTTAGAGGTTTTGTTTTGTTTTTTTTTAATGGATGACCCAAATCTAGTTTGGTTAAGGTCAAATTACCCAGATTCTAAAAATAATGAAAACTAACTTTTTGCTTATGTCACAAAGCACCATCCAACGTTAAATTCTCTTTAGAGCCATTTGCGGTTATGGGTTCGCATCCATCGTGAACTGATGAGACCCATAACGCAATTTCAAGGCGCATCGCGACTTTTATAAAAAATACAAATTATCTCCTATTATTAAAATTTTTTGCGATCTTATGACTTTTTCCGAACCTGAAATAGCGTTCAGGGTCATCAATTCGCGATGGATGAGAACCTGCAATCACAAATGGACGATTTAATGTTGGTCATTGATTTCTGAAGTAAGCAAAAGGTTAATTTTCATTATCTTTAGAATCCAGGTCATTTGACATTAGCACAACTAAATTTGGTCATCCTTACAAAAATCTCTTATATTTTCTGTTCTTCTTAAAATTTTGATATATATATATATATACCAAATAATTAAGTTTTAATTTTGCCTTATGACTTTTTGTAATTGAAAAATTATTTGCATAAAAAATTGGAGGGTAAAATTTTGCCCCTCCTTTGAAAAAATTCTAGCTATGCCCTGTGTGCAAATTTTATTATTTTCTTCATTCCTCTATTGTGATTATTTCGTAGAGTTGGCTATTCGTTTGTATGCGAGTCATTAAAGTTGATTGGACTAACAAGAAGCTTGTAAGCATTGGGGTAAATTTTATTACTCGAGTATGAAATCCATATCATATTCTTAATATGGAGTATATTAACGTGAAGGTTGCAGTTCATTATTATGGAAGGTTAGCAGCAAAGCAGGGATGGCGCTTTGACACAACATATGATCACAAAGATGAAAATGGGGAGCCCCTTCCTTTCATATTTGTTCTTGGCTCTGGGAAAGTAAGTCAATTGTTGTTGATATCCTACCATTCTACCTAA

mRNA sequence

ATTATTTCCTCTCCCTTCCACCTTCTATTTCATGTCTTTCGAATCCCATTATCCTCTCCTTCCTGTAATTTCTCCACCCACTAGAAGGTCTCTCTCTCTGCACTTATCTCCACCGCCATTTCAACCTTCCTCTCCTCCTCTCTCGTCACTCCTTCCAAATCTGTCGCACCGAATTTCTTCCAGCTCCGGGACTCGGTCGGCGTCAAGGCGTTGGAGCTTCGCATTGGCTCAGGGGAAACCCCCCTCGACGGAGACCAGGTCGTAATTTTATGGAGGAATCTTGTGTTTTCATCGCCTTCGTTAAGGCAATCATTTTTGGATTTTTTTTGTCCACTTCTGACTTCTATGTTGTTCAAGTTACAAACAATGGACACCCCTTTTTCATCATTTTATCATGCCGATATATTAACGTGAAGGTTGCAGTTCATTATTATGGAAGGTTAGCAGCAAAGCAGGGATGGCGCTTTGACACAACATATGATCACAAAGATGAAAATGGGGAGCCCCTTCCTTTCATATTTGTTCTTGGCTCTGGGAAAGTAAGTCAATTGTTGTTGATATCCTACCATTCTACCTAA

Coding sequence (CDS)

ATGGAGGAATCTTGTGTTTTCATCGCCTTCGTTAAGGCAATCATTTTTGGATTTTTTTTGTCCACTTCTGACTTCTATGTTGTTCAAGTTACAAACAATGGACACCCCTTTTTCATCATTTTATCATGCCGATATATTAACGTGAAGGTTGCAGTTCATTATTATGGAAGGTTAGCAGCAAAGCAGGGATGGCGCTTTGACACAACATATGATCACAAAGATGAAAATGGGGAGCCCCTTCCTTTCATATTTGTTCTTGGCTCTGGGAAAGTAAGTCAATTGTTGTTGATATCCTACCATTCTACCTAA

Protein sequence

MEESCVFIAFVKAIIFGFFLSTSDFYVVQVTNNGHPFFIILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKVSQLLLISYHST
Homology
[Close]
BLAST of Lsi02G010310 vs. ExPASy Swiss-Prot
Match: O81864 (Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP17-1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-15
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 49  KVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           ++ +HYYGRLAAKQGWRFD+TYDHKD NGE +PF FVLGS KV
Sbjct: 107 QIEIHYYGRLAAKQGWRFDSTYDHKDSNGEAVPFTFVLGSSKV 149

[Close]
BLAST of Lsi02G010310 vs. ExPASy TrEMBL
Match: A0A5A7TKB7 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G001330 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.2e-18
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]
BLAST of Lsi02G010310 vs. ExPASy TrEMBL
Match: A0A5D3E097 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00180 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.2e-18
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]
BLAST of Lsi02G010310 vs. ExPASy TrEMBL
Match: A0A1S3C9V7 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]
BLAST of Lsi02G010310 vs. ExPASy TrEMBL
Match: A0A1S3C9F0 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]
BLAST of Lsi02G010310 vs. ExPASy TrEMBL
Match: A0A6J1KH10 (Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111495682 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.2e-16
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 49  KVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           +VAVHYYGRLAAKQGWRFDTTYDHKDENGEP+PF FVLGSGKV
Sbjct: 102 QVAVHYYGRLAAKQGWRFDTTYDHKDENGEPIPFTFVLGSGKV 144

[Close]
BLAST of Lsi02G010310 vs. NCBI nr
Match: KAG7019423.1 (Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-18
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 46  INVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           INVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEP+PF FVLGSGKV
Sbjct: 107 INVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPIPFTFVLGSGKV 152

[Close]
BLAST of Lsi02G010310 vs. NCBI nr
Match: KAA0043248.1 (peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]
BLAST of Lsi02G010310 vs. NCBI nr
Match: TYK29312.1 (peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 36 PFFI-------ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGS 92
          PFF+       I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGS
Sbjct: 5  PFFLSEYEIQTIFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGS 64

[Close]
BLAST of Lsi02G010310 vs. NCBI nr
Match: XP_008459060.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]
BLAST of Lsi02G010310 vs. NCBI nr
Match: XP_008459062.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isoform X3 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 40  ILSCRYINVKVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           I   R I+VKV VHYYGRLAAKQGWRFDTTYDHKDENGEPLPF FVLGSGKV
Sbjct: 98  IFFIRSIHVKVVVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFTFVLGSGKV 149

[Close]
BLAST of Lsi02G010310 vs. TAIR 10
Match: AT4G19830.1 (FKBP-like peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-16
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 49  KVAVHYYGRLAAKQGWRFDTTYDHKDENGEPLPFIFVLGSGKV 92
           ++ +HYYGRLAAKQGWRFD+TYDHKD NGE +PF FVLGS KV
Sbjct: 107 QIEIHYYGRLAAKQGWRFDSTYDHKDSNGEAVPFTFVLGSSKV 149

The following BLAST results are available for this feature:
BLAST of Lsi02G010310 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O818645.5e-1576.74Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thali... [more]
BLAST of Lsi02G010310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TKB77.2e-1876.19Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3E0977.2e-1876.19Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3C9V71.2e-1786.54Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1[more]
A0A1S3C9F01.2e-1786.54Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103498282 PE=4 SV=1[more]
A0A6J1KH105.2e-1693.02Peptidylprolyl isomerase OS=Cucurbita maxima OX=3661 GN=LOC111495682 PE=4 SV=1[more]
BLAST of Lsi02G010310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019423.18.7e-1895.65Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic, partial [Cucurbita ... [more]
KAA0043248.11.5e-1776.19peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa][more]
TYK29312.11.5e-1776.19peptidyl-prolyl cis-trans isomerase FKBP17-1 [Cucumis melo var. makuwa][more]
XP_008459060.12.5e-1786.54PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isof... [more]
XP_008459062.12.5e-1786.54PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic-like isof... [more]
BLAST of Lsi02G010310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G19830.13.9e-1676.74FKBP-like peptidyl-prolyl cis-trans isomerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.50.40coord: 47..96
e-value: 3.9E-6
score: 28.8
IPR044197Peptidyl-prolyl cis-trans isomerase FKBP17-1-likePANTHERPTHR47860PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP17-1, CHLOROPLASTICcoord: 49..91
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainPROSITEPS50059FKBP_PPIASEcoord: 47..102
score: 9.135663

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G010310.1Lsi02G010310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000413 protein peptidyl-prolyl isomerization
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity