Lcy12g020870.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy12g020870.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glucose-1-phosphate adenylyltransferase
Location	Chr12: 48052840 .. 48053635 (-)
Sequence length	543
RNA-Seq Expression	Lcy12g020870.1
Synteny	Lcy12g020870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGTTTGGTGTGACCTTGAAGGCCAATACCATTCCATTTAGAATCAGCGGTCGGTGTGCTAGGAATCAACGTTCCGGGTTCTGGGGAGAGAGTATTGGGAGAAGCGGAAGATGCAACCAGATACAGATGAATGTGCACTCGCGGAAGAATTCTTCTTCTCAGAGCAGGGCTAGAAAGCTTAAACCAGGAGTTGCCCATTCTGTTCTCATGTCGGATATTATTGAGGAAACACTGGTAAGTGGACTCAGTACTTTGATATTCAAAAGTATACGAACTTTTACAGGAGTTTTGACTCCAAATTTTATCTCAGACTATACAGGCTCCTACATTTGAGACTCCAAGAGCTGATCCGAAAAAGGTTGCTTCAATCATATTGGGTGGAGGTGCTGGAACTCGCTTGTTTCCTCTTACCAGTCAGCGAGCCAAACCAGCGGTAAACACCTCTAACAAATTGCTCACTTCTTGAAGGACAACTTCACAGTCTTGAATGCATTTTTAATTGGGGGATATATTTAGATGGTTATAGTAGATAATTGATAACAGAAGCTATCGATCCAATCCAGGAGAACGAGTTAGTGCACGAATTTAAGTAGATAATCTTTGCTTGCAGGTTCCAATTGGTGGTTGCTATAGGCTGATCGACGTACCCATGAGTAATTGCATCAACAGTGGCATCGAAAAGATATTCGTTCTAACACAGTTTAACTCCTTTTCTCTCAATCGTCACCTTGCTCGAATTTATAATTTTGGTAATGGAGTGAATTTTGGCGATGGATTCGTGGAGGTATGA

mRNA sequence

ATGGATTCGTTTGGTGTGACCTTGAAGGCCAATACCATTCCATTTAGAATCAGCGGTCGGTGTGCTAGGAATCAACGTTCCGGGTTCTGGGGAGAGAGTATTGGGAGAAGCGGAAGATGCAACCAGATACAGATGAATGTGCACTCGCGGAAGAATTCTTCTTCTCAGAGCAGGGCTAGAAAGCTTAAACCAGGAGTTGCCCATTCTGTTCTCATGTCGGATATTATTGAGGAAACACTGACTATACAGGCTCCTACATTTGAGACTCCAAGAGCTGATCCGAAAAAGGTTGCTTCAATCATATTGGGTGGAGGTGCTGGAACTCGCTTGTTTCCTCTTACCAGTCAGCGAGCCAAACCAGCGGTTCCAATTGGTGGTTGCTATAGGCTGATCGACGTACCCATGAGTAATTGCATCAACAGTGGCATCGAAAAGATATTCGTTCTAACACAGTTTAACTCCTTTTCTCTCAATCGTCACCTTGCTCGAATTTATAATTTTGGTAATGGAGTGAATTTTGGCGATGGATTCGTGGAGGTATGA

Coding sequence (CDS)

ATGGATTCGTTTGGTGTGACCTTGAAGGCCAATACCATTCCATTTAGAATCAGCGGTCGGTGTGCTAGGAATCAACGTTCCGGGTTCTGGGGAGAGAGTATTGGGAGAAGCGGAAGATGCAACCAGATACAGATGAATGTGCACTCGCGGAAGAATTCTTCTTCTCAGAGCAGGGCTAGAAAGCTTAAACCAGGAGTTGCCCATTCTGTTCTCATGTCGGATATTATTGAGGAAACACTGACTATACAGGCTCCTACATTTGAGACTCCAAGAGCTGATCCGAAAAAGGTTGCTTCAATCATATTGGGTGGAGGTGCTGGAACTCGCTTGTTTCCTCTTACCAGTCAGCGAGCCAAACCAGCGGTTCCAATTGGTGGTTGCTATAGGCTGATCGACGTACCCATGAGTAATTGCATCAACAGTGGCATCGAAAAGATATTCGTTCTAACACAGTTTAACTCCTTTTCTCTCAATCGTCACCTTGCTCGAATTTATAATTTTGGTAATGGAGTGAATTTTGGCGATGGATTCGTGGAGGTATGA

Protein sequence

MDSFGVTLKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV

Homology

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy Swiss-Prot
Match: P55233 (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris OX=161934 GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.2e-50
Identity = 105/177 (59.32%), Postives = 129/177 (72.88%), Query Frame = 0


Query: 8   LKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKL-KPGV 67
           + A+     ++       +  F GE I +S +   ++        S ++S+ R + KPGV
Sbjct: 1   MDASAAAINVNAHLTEVGKKRFLGERISQSLKGKDLRALF-----SRTESKGRNVNKPGV 60

Query: 68  AHSVLMSDI---IEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVP 127
           A SVL SD    ++E+L  +   FE+P+ADPK VA+I+LGGGAGTRLFPLTS+RAKPAVP
Sbjct: 61  AFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVP 120

Query: 128 IGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           IGGCYRLIDVPMSNCINSGI KIF+LTQFNSFSLNRHLAR YNFG+GVNFGDGFVEV
Sbjct: 121 IGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGFVEV 172

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy Swiss-Prot
Match: P55230 (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APL2 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-48
Identity = 101/180 (56.11%), Postives = 119/180 (66.11%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRAR 60
           M+S    +K N   F ++      + S FWG          Q+    H R      +  +
Sbjct: 1   MESCFPAMKLNQCTFGLNNEIVSERVSAFWG---------TQVVKPNHLRTTKLRSAPQK 60

Query: 61  KLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKP 120
           K++  +  SVL   + +E+     P   T  ADPK VASIILGGGAGTRLFPLTS+RAKP
Sbjct: 61  KIQTNLIRSVLTPFVDQES---HEPLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKP 120

Query: 121 AVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 180
           AVPIGGCYRLID+PMSNCINSGI KIF+LTQFNSFSLNRHL+R YNFGNGVNFGDGFVEV
Sbjct: 121 AVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEV 168

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy Swiss-Prot
Match: P55242 (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum OX=4113 GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-47
Identity = 105/158 (66.46%), Postives = 116/158 (73.42%), Query Frame = 0


Query: 24  NQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKLKPGVAHSVLMSDIIEETLTIQ 83
           NQ S FWGE I      N+    V S K+ ++Q R R + P    +VL  DI +E L  +
Sbjct: 19  NQESAFWGEKISGRRLINK-GFGVRSCKSFTTQQRGRNVTP----AVLTRDINKEMLPFE 78

Query: 84  APTF-ETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSG 143
              F E P ADPK VAS+ILGGG GTRLFPLTS+RAKPAVPIGGCYRLIDVPMSNCINSG
Sbjct: 79  ESMFEEQPTADPKAVASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSG 138

Query: 144 IEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           I KIF+LTQFNSFSLNRHLA  YNFGNGV FGDGFVEV
Sbjct: 139 IRKIFILTQFNSFSLNRHLA-TYNFGNGVGFGDGFVEV 170

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy Swiss-Prot
Match: P55231 (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APL3 PE=2 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 8.4e-43
Identity = 95/158 (60.13%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 23  RNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKLKPGVAHSVLMSDIIEETLTI 82
           +N  + F GE I  S       +   S   SS + R RKL+PGVA+++  S   +E L  
Sbjct: 21  KNVENKFLGEKIKGS------VLKPFSSDLSSKKFRNRKLRPGVAYAIATSKNAKEALKN 80

Query: 83  QAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSG 142
           Q   FE  RADPK VA+IILGGG G +LFPLT + A PAVP+GGCYR+ID+PMSNCINS 
Sbjct: 81  QPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSC 140

Query: 143 IEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           I KIFVLTQFNS SLNRHLAR Y FGNG+NFGDGFVEV
Sbjct: 141 INKIFVLTQFNSASLNRHLARTY-FGNGINFGDGFVEV 171

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy Swiss-Prot
Match: Q9SIK1 (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.2e-42
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 23  RNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKLKPGVAHSVLMSDIIEETLTI 82
           RN  + F+GE    +G C +   ++ S+K      R +K K GV ++V  SD  ++ +T+
Sbjct: 22  RNVENRFYGEKNNNNGLCKRFGSDLGSKK-----FRNQKFKHGVVYAVATSDNPKKAMTV 81

Query: 83  QAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSG 142
           +   FE  + DP+ VA+IILGGG G +LFPLT + A PAVP+GGCYRLID+PMSNCINS 
Sbjct: 82  KTSMFERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSC 141

Query: 143 IEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           I KIFVLTQFNS SLNRHLAR Y FGNG+NFG GFVEV
Sbjct: 142 INKIFVLTQFNSASLNRHLARTY-FGNGINFGGGFVEV 173

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy TrEMBL
Match: A0A6J1BSV7 (Glucose-1-phosphate adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC111005044 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.9e-82
Identity = 155/180 (86.11%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRAR 60
           MDSFGVTLKAN +PFRIS +CARNQ SGFWGESIGRSGRC  IQ N H  KNS SQSR R
Sbjct: 1   MDSFGVTLKANAVPFRISSQCARNQCSGFWGESIGRSGRCKLIQTNAHLWKNSCSQSRDR 60

Query: 61  KLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKP 120
           KLK GV +SVL S+I EET+T+QAP FETPRADPKKVASIILGGGAG+RLFPLTSQRAKP
Sbjct: 61  KLKSGVVYSVLTSEISEETMTLQAPLFETPRADPKKVASIILGGGAGSRLFPLTSQRAKP 120

Query: 121 AVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 180
           AVPIGGCYRLIDVPMSNCIN GIEKIF+LTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV
Sbjct: 121 AVPIGGCYRLIDVPMSNCINGGIEKIFILTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 180

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy TrEMBL
Match: A0A6J1F7S7 (Glucose-1-phosphate adenylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111442877 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.8e-81
Identity = 158/183 (86.34%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARN-QRSGFWGESIGRSGRCNQIQMNVHSRKN--SSSQS 60
           MDSFGVTLKANT+PFR S  C R  Q SGFWGESI RSG+C QIQMN +SRKN  SSS S
Sbjct: 1   MDSFGVTLKANTMPFRASRHCGRKVQCSGFWGESIERSGKCKQIQMNAYSRKNSDSSSHS 60

Query: 61  RARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQR 120
           RARKL  GVAHSVLMS++ EET T+QAP FETPRADPKK+ASIILGGGAGTRLFPLTSQR
Sbjct: 61  RARKLTAGVAHSVLMSEVSEETATLQAPIFETPRADPKKIASIILGGGAGTRLFPLTSQR 120

Query: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180
           AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF
Sbjct: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy TrEMBL
Match: A0A6J1IGX2 (Glucose-1-phosphate adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111474940 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 157/183 (85.79%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARN-QRSGFWGESIGRSGRCNQIQMNVHSRKN--SSSQS 60
           MDSFGVTLKANT+PFR S +C R  Q SGFWGESI RSG+C QIQMN +SRKN  SSS S
Sbjct: 1   MDSFGVTLKANTMPFRASRQCGRKVQCSGFWGESIERSGKCKQIQMNAYSRKNSYSSSHS 60

Query: 61  RARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQR 120
           RARKL  GVAHSVLMS++ EET T+QA  FETPRADPKK+ASIILGGGAGTRLFPLTSQR
Sbjct: 61  RARKLTAGVAHSVLMSEVSEETTTLQASIFETPRADPKKIASIILGGGAGTRLFPLTSQR 120

Query: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180
           AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF
Sbjct: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy TrEMBL
Match: A0A0A0LG55 (Glucose-1-phosphate adenylyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G859710 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.6e-79
Identity = 152/182 (83.52%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRK--NSSSQSR 60
           MDSFGV LK NT+PFRI+ +C RNQ SGFWG+ IGR+GR  QIQ N +S K  NSSS SR
Sbjct: 1   MDSFGVALKPNTMPFRITSQCVRNQCSGFWGDGIGRNGRSKQIQRNAYSLKNSNSSSFSR 60

Query: 61  ARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRA 120
           ARKL PGVA+SVLMS+I EET T+QAP FE PRADPKK+ASIILGGGAGTRLFPLTSQRA
Sbjct: 61  ARKLAPGVAYSVLMSEINEETSTLQAPIFEAPRADPKKIASIILGGGAGTRLFPLTSQRA 120

Query: 121 KPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFV 180
           KPAVPIGGCYRLID+PMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFV
Sbjct: 121 KPAVPIGGCYRLIDIPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFV 180

[Close]

BLAST of Lcy12g020870.1 vs. ExPASy TrEMBL
Match: A0A6J1FK33 (Glucose-1-phosphate adenylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446454 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.4e-79
Identity = 151/180 (83.89%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRAR 60
           MDSFG+TL A++IPFRI G+C  NQRSG WGESI    RC Q+QMNVHSRKN SSQS A 
Sbjct: 1   MDSFGMTLMADSIPFRIGGQCGWNQRSGLWGESI---RRCKQMQMNVHSRKNPSSQSCAT 60

Query: 61  KLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKP 120
           KLKPGVAHSVLMSDI EE + +QAP  E PRADPKKVASIILGGGAGTRL+PLTSQR+KP
Sbjct: 61  KLKPGVAHSVLMSDIDEEAMILQAPILEAPRADPKKVASIILGGGAGTRLYPLTSQRSKP 120

Query: 121 AVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 180
           AVPIGGCYRLID+PMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV
Sbjct: 121 AVPIGGCYRLIDIPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 177

[Close]

BLAST of Lcy12g020870.1 vs. NCBI nr
Match: XP_022132087.1 (glucose-1-phosphate adenylyltransferase large subunit 1-like [Momordica charantia])

HSP 1 Score: 315.1 bits (806), Expect = 4.0e-82
Identity = 155/180 (86.11%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRAR 60
           MDSFGVTLKAN +PFRIS +CARNQ SGFWGESIGRSGRC  IQ N H  KNS SQSR R
Sbjct: 1   MDSFGVTLKANAVPFRISSQCARNQCSGFWGESIGRSGRCKLIQTNAHLWKNSCSQSRDR 60

Query: 61  KLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKP 120
           KLK GV +SVL S+I EET+T+QAP FETPRADPKKVASIILGGGAG+RLFPLTSQRAKP
Sbjct: 61  KLKSGVVYSVLTSEISEETMTLQAPLFETPRADPKKVASIILGGGAGSRLFPLTSQRAKP 120

Query: 121 AVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 180
           AVPIGGCYRLIDVPMSNCIN GIEKIF+LTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV
Sbjct: 121 AVPIGGCYRLIDVPMSNCINGGIEKIFILTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 180

[Close]

BLAST of Lcy12g020870.1 vs. NCBI nr
Match: KAG6591303.1 (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024188.1 Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311.6 bits (797), Expect = 4.4e-81
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARN-QRSGFWGESIGRSGRCNQIQMNVHSRK--NSSSQS 60
           MDSFGVTLKANT+PFR S +C R  Q SGFWGESI RSG+C QIQMN +SRK  NSSS S
Sbjct: 1   MDSFGVTLKANTMPFRASRQCGRKVQCSGFWGESIERSGKCKQIQMNAYSRKNSNSSSHS 60

Query: 61  RARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQR 120
           RARKL  GVAHSVLMS++ EET T+QAP FETPRADPKK+ASIILGGGAGTRLFPLTSQR
Sbjct: 61  RARKLTAGVAHSVLMSEVSEETATLQAPIFETPRADPKKIASIILGGGAGTRLFPLTSQR 120

Query: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180
           AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF
Sbjct: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180

[Close]

BLAST of Lcy12g020870.1 vs. NCBI nr
Match: XP_022936202.1 (glucose-1-phosphate adenylyltransferase large subunit 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 311.2 bits (796), Expect = 5.7e-81
Identity = 158/183 (86.34%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARN-QRSGFWGESIGRSGRCNQIQMNVHSRKN--SSSQS 60
           MDSFGVTLKANT+PFR S  C R  Q SGFWGESI RSG+C QIQMN +SRKN  SSS S
Sbjct: 1   MDSFGVTLKANTMPFRASRHCGRKVQCSGFWGESIERSGKCKQIQMNAYSRKNSDSSSHS 60

Query: 61  RARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQR 120
           RARKL  GVAHSVLMS++ EET T+QAP FETPRADPKK+ASIILGGGAGTRLFPLTSQR
Sbjct: 61  RARKLTAGVAHSVLMSEVSEETATLQAPIFETPRADPKKIASIILGGGAGTRLFPLTSQR 120

Query: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180
           AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF
Sbjct: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180

[Close]

BLAST of Lcy12g020870.1 vs. NCBI nr
Match: XP_023535195.1 (glucose-1-phosphate adenylyltransferase large subunit 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 157/183 (85.79%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARN-QRSGFWGESIGRSGRCNQIQMNVHSRK--NSSSQS 60
           MDSFGVTLKANT+PFR S +C R  Q SGFWGE I RSG+C QIQMN +SRK  NSSS S
Sbjct: 1   MDSFGVTLKANTMPFRASRQCGRKVQCSGFWGEGIERSGKCKQIQMNAYSRKNSNSSSHS 60

Query: 61  RARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQR 120
           RARKL  GVAHSVLMS++ EET T+QAP FETPRADPKK+ASIILGGGAGTRLFPLTSQR
Sbjct: 61  RARKLTAGVAHSVLMSEVSEETATLQAPIFETPRADPKKIASIILGGGAGTRLFPLTSQR 120

Query: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180
           AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF
Sbjct: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180

[Close]

BLAST of Lcy12g020870.1 vs. NCBI nr
Match: XP_022975515.1 (glucose-1-phosphate adenylyltransferase large subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 3.7e-80
Identity = 157/183 (85.79%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARN-QRSGFWGESIGRSGRCNQIQMNVHSRKN--SSSQS 60
           MDSFGVTLKANT+PFR S +C R  Q SGFWGESI RSG+C QIQMN +SRKN  SSS S
Sbjct: 1   MDSFGVTLKANTMPFRASRQCGRKVQCSGFWGESIERSGKCKQIQMNAYSRKNSYSSSHS 60

Query: 61  RARKLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQR 120
           RARKL  GVAHSVLMS++ EET T+QA  FETPRADPKK+ASIILGGGAGTRLFPLTSQR
Sbjct: 61  RARKLTAGVAHSVLMSEVSEETTTLQASIFETPRADPKKIASIILGGGAGTRLFPLTSQR 120

Query: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180
           AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF
Sbjct: 121 AKPAVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGF 180

[Close]

BLAST of Lcy12g020870.1 vs. TAIR 10
Match: AT1G27680.1 (ADPGLC-PPase large subunit )

HSP 1 Score: 192.2 bits (487), Expect = 3.6e-49
Identity = 101/180 (56.11%), Postives = 119/180 (66.11%), Query Frame = 0


Query: 1   MDSFGVTLKANTIPFRISGRCARNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRAR 60
           M+S    +K N   F ++      + S FWG          Q+    H R      +  +
Sbjct: 1   MESCFPAMKLNQCTFGLNNEIVSERVSAFWG---------TQVVKPNHLRTTKLRSAPQK 60

Query: 61  KLKPGVAHSVLMSDIIEETLTIQAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKP 120
           K++  +  SVL   + +E+     P   T  ADPK VASIILGGGAGTRLFPLTS+RAKP
Sbjct: 61  KIQTNLIRSVLTPFVDQES---HEPLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKP 120

Query: 121 AVPIGGCYRLIDVPMSNCINSGIEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 180
           AVPIGGCYRLID+PMSNCINSGI KIF+LTQFNSFSLNRHL+R YNFGNGVNFGDGFVEV
Sbjct: 121 AVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEV 168

[Close]

BLAST of Lcy12g020870.1 vs. TAIR 10
Match: AT4G39210.1 (Glucose-1-phosphate adenylyltransferase family protein )

HSP 1 Score: 174.9 bits (442), Expect = 6.0e-44
Identity = 95/158 (60.13%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 23  RNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKLKPGVAHSVLMSDIIEETLTI 82
           +N  + F GE I  S       +   S   SS + R RKL+PGVA+++  S   +E L  
Sbjct: 21  KNVENKFLGEKIKGS------VLKPFSSDLSSKKFRNRKLRPGVAYAIATSKNAKEALKN 80

Query: 83  QAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSG 142
           Q   FE  RADPK VA+IILGGG G +LFPLT + A PAVP+GGCYR+ID+PMSNCINS 
Sbjct: 81  QPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSC 140

Query: 143 IEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           I KIFVLTQFNS SLNRHLAR Y FGNG+NFGDGFVEV
Sbjct: 141 INKIFVLTQFNSASLNRHLARTY-FGNGINFGDGFVEV 171

[Close]

BLAST of Lcy12g020870.1 vs. TAIR 10
Match: AT2G21590.1 (Glucose-1-phosphate adenylyltransferase family protein )

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-43
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 23  RNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKLKPGVAHSVLMSDIIEETLTI 82
           RN  + F+GE    +G C +   ++ S+K      R +K K GV ++V  SD  ++ +T+
Sbjct: 22  RNVENRFYGEKNNNNGLCKRFGSDLGSKK-----FRNQKFKHGVVYAVATSDNPKKAMTV 81

Query: 83  QAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSG 142
           +   FE  + DP+ VA+IILGGG G +LFPLT + A PAVP+GGCYRLID+PMSNCINS 
Sbjct: 82  KTSMFERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSC 141

Query: 143 IEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           I KIFVLTQFNS SLNRHLAR Y FGNG+NFG GFVEV
Sbjct: 142 INKIFVLTQFNSASLNRHLARTY-FGNGINFGGGFVEV 173

[Close]

BLAST of Lcy12g020870.1 vs. TAIR 10
Match: AT2G21590.2 (Glucose-1-phosphate adenylyltransferase family protein )

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-43
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 23  RNQRSGFWGESIGRSGRCNQIQMNVHSRKNSSSQSRARKLKPGVAHSVLMSDIIEETLTI 82
           RN  + F+GE    +G C +   ++ S+K      R +K K GV ++V  SD  ++ +T+
Sbjct: 22  RNVENRFYGEKNNNNGLCKRFGSDLGSKK-----FRNQKFKHGVVYAVATSDNPKKAMTV 81

Query: 83  QAPTFETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSG 142
           +   FE  + DP+ VA+IILGGG G +LFPLT + A PAVP+GGCYRLID+PMSNCINS 
Sbjct: 82  KTSMFERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSC 141

Query: 143 IEKIFVLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           I KIFVLTQFNS SLNRHLAR Y FGNG+NFG GFVEV
Sbjct: 142 INKIFVLTQFNSASLNRHLARTY-FGNGINFGGGFVEV 173

[Close]

BLAST of Lcy12g020870.1 vs. TAIR 10
Match: AT5G19220.1 (ADP glucose pyrophosphorylase large subunit 1 )

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-37
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 88  ETPRADPKKVASIILGGGAGTRLFPLTSQRAKPAVPIGGCYRLIDVPMSNCINSGIEKIF 147
           ET + DP+ VASIILGGGAGTRLFPLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++
Sbjct: 81  ETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVY 140

Query: 148 VLTQFNSFSLNRHLARIYNFGNGVNFGDGFVEV 181
           +LTQ+NS SLNRHLAR YN  NG+ FGDG+VEV
Sbjct: 141 ILTQYNSASLNRHLARAYN-SNGLGFGDGYVEV 172

The following BLAST results are available for this feature:

BLAST of Lcy12g020870.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55233	4.2e-50	59.32	Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplasti...	[more]
P55230	5.1e-48	56.11	Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabid...	[more]
P55242	1.5e-47	66.46	Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplas...	[more]
P55231	8.4e-43	60.13	Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabid...	[more]
Q9SIK1	4.2e-42	56.33	Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS...	[more]

BLAST of Lcy12g020870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSV7	1.9e-82	86.11	Glucose-1-phosphate adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1F7S7	2.8e-81	86.34	Glucose-1-phosphate adenylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1IGX2	1.8e-80	85.79	Glucose-1-phosphate adenylyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111474...	[more]
A0A0A0LG55	2.6e-79	83.52	Glucose-1-phosphate adenylyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G8597...	[more]
A0A6J1FK33	3.4e-79	83.89	Glucose-1-phosphate adenylyltransferase OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Lcy12g020870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132087.1	4.0e-82	86.11	glucose-1-phosphate adenylyltransferase large subunit 1-like [Momordica charanti...	[more]
KAG6591303.1	4.4e-81	86.34	Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplasti...	[more]
XP_022936202.1	5.7e-81	86.34	glucose-1-phosphate adenylyltransferase large subunit 1-like isoform X1 [Cucurbi...	[more]
XP_023535195.1	1.3e-80	85.79	glucose-1-phosphate adenylyltransferase large subunit 1-like isoform X1 [Cucurbi...	[more]
XP_022975515.1	3.7e-80	85.79	glucose-1-phosphate adenylyltransferase large subunit 1-like isoform X1 [Cucurbi...	[more]

BLAST of Lcy12g020870.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27680.1	3.6e-49	56.11	ADPGLC-PPase large subunit	[more]
AT4G39210.1	6.0e-44	60.13	Glucose-1-phosphate adenylyltransferase family protein	[more]
AT2G21590.1	3.0e-43	56.33	Glucose-1-phosphate adenylyltransferase family protein	[more]
AT2G21590.2	3.0e-43	56.33	Glucose-1-phosphate adenylyltransferase family protein	[more]
AT5G19220.1	1.9e-37	78.49	ADP glucose pyrophosphorylase large subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	coord: 84..180 e-value: 9.9E-24 score: 86.1
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 96..178
IPR005835	Nucleotidyl transferase domain	PFAM	PF00483	NTP_transferase	coord: 99..168 e-value: 4.1E-25 score: 88.8
None	No IPR available	PANTHER	PTHR43523:SF4	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC	coord: 1..180
IPR011831	Glucose-1-phosphate adenylyltransferase	PANTHER	PTHR43523	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	coord: 1..180
IPR005836	ADP-glucose pyrophosphorylase, conserved site	PROSITE	PS00808	ADP_GLC_PYROPHOSPH_1	coord: 103..122

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy12g020870	Lcy12g020870	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g020870.1.exon3	Lcy12g020870.1.exon3	exon
Lcy12g020870.1.exon2	Lcy12g020870.1.exon2	exon
Lcy12g020870.1.exon1	Lcy12g020870.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g020870.1.cds3	Lcy12g020870.1.cds3	CDS
Lcy12g020870.1.cds2	Lcy12g020870.1.cds2	CDS
Lcy12g020870.1.cds1	Lcy12g020870.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy12g020870.1	Lcy12g020870.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0005978	glycogen biosynthetic process
biological_process	GO:0019252	starch biosynthetic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0008878	glucose-1-phosphate adenylyltransferase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0005524	ATP binding