Lcy11g006980.1 (mRNA) Sponge gourd (P93075) v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTATATTATCCCTTTTCAAAAGGAAACTCCATAGAAACTTAGCCTGAAATCAGTGAAGCAGAGACTCTTCGATACTCGTTCGTAGAGAAAGCGAAGGCGAAATTTGAAGAAAAAGGAAGACGAAAATGGAAGGATTGCAGCAAATGGGGCTTCCAGTTCTCGGAATTGTTGCAGCTGCAGCCATTACCTTCTACGTCGTAAGCTTTTCTGAGCTTCGAGAGGTACCTTTCTTCTTCTTCTTTCTCTCCTCCCCAAACCCTAGCTTTCTCTTCGATAAATTTCTATATGTTCTATACCCTTACAACATTTGAATTCATTTGATATTCAATATTTCAAGTCTATAATCTCCAAGACATCTCGATTGCTGGGATATGATTTTAGATTATTGTGGTTTTATTCATAATCTCAAGTTAATCATTTAAGTCCCGCTTTATAGTTGTTTGGTTTTTGGTTTTCGGGTTTTGAAAGTTAGGTTTGTTTTCTCTTAATTTCCTTATCATGATTCTCATTTTCTTAAGAAAACACTCGGATTTTGAATTCTTAGCCAAATTATGAAAATAAAAACAAGTATTTGAAAACACTTTTAAATTTCAAAACTTGACTTAGTTTTTTAAAATACGAGAGAAGGTAGTTAATAAAACAAAGAGACTGCTAAGTGAAAGTAGTGTTTATAAGTTTAATTTTTAAAAATCAAAAATTAAAAATCTAATGGTTGTGGAACGAGATTTTAGTTTTCAAAATTTGACTTAATTTGAATGTAGATAATAAAATAAATAAATTTATAGGTTTATAAGCCTATTTTTGAAAGTTTTATTAGGATTCATATCTTTCATTAAAGCTTGGCAAACATTATTGATGTTGGTGAGAGTTGATTGAAATGCAATGATTAGTTACTTTTAAGACTTGGAATTATAAAACCAATTACTATGTGAAGAAGAAGAACTTTTATTGATTTTTCCTGCATGAACGCTATAGTTTGTTGTTTATTTTGAGAGTATTTGAGTGAATATGTTTTGCCACACTTAAAAAAATAATAATAATAATAAAATAAAATATAGAAATTTAATGGTTTTGTTTTAAATTTGGGGAATGTGAAGAAATCATTCAGAGATTTGGATGAAGCAGAGGATGAGAATGGAGGATTTAAGATGACTTCAAGTTCAAGAGAAAGGCGAGCTAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGAGAGTTTTTCTTAGTTCTCAGGTTTTTTTGACTTTCTTTAAAGATCTGTAAGATAATTTGCCTCTTTTATAAGCTTTGATTTCTTATTTTGGAGGGTACACCATTTAACTTCAAATCCGTAATGCTAACTTGAACATAACTTAAATGTAAGTCATACATCCTCGATCAAGAGGTCAAAGGATCAAGTCTTCACTCCAACATTTCTAGAACTCAAAAATAAAGTCTTCAAATTGTTAACACGTTGATAATTATCTTTTATTTTTCTTCTAGTTCGATAACATCAGGAAACATAATATGTGAGTACTCATTTGATCATTATGAACATAATTATAAATTGCTTTTCCAAAGCATGCCTTTTCGTTTAACTGAAACAACAATCCATTAAGTTCTCTAAGTGAACAAACATAGATATTCTATCTTCCAAAACCCAAACTTTCATGTTATTTTTTTAGTACAACAAATGTATGAAGTATAGGAGTTTGAATTTCCAACTCCCTTATATTATCCCTTTTCAAAAGGAAACTCCATAGAAACTTAGCCTGAAATCAGTGAAGCAGAGACTCTTCGATACTCGTTCGTAGAGAAAGCGAAGGCGAAATTTGAAGAAAAAGGAAGACGAAAATGGAAGGATTGCAGCAAATGGGGCTTCCAGTTCTCGGAATTGTTGCAGCTGCAGCCATTACCTTCTACGTCGTAAGCTTTTCTGAGCTTCGAGAGAAATCATTCAGAGATTTGGATGAAGCAGAGGATGAGAATGGAGGATTTAAGATGACTTCAAGTTCAAGAGAAAGGCGAGCTAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGAGAGTTTTTCTTAGTTCTCAGGTTTTTTTGACTTTCTTTAAAGATCTGTAAGATAATTTGCCTCTTTTATAAGCTTTGATTTCTTATTTTGGAGGGTACACCATTTAACTTCAAATCCGTAATGCTAACTTGAACATAACTTAAATGTAAGTCATACATCCTCGATCAAGAGGTCAAAGGATCAAGTCTTCACTCCAACATTTCTAGAACTCAAAAATAAAGTCTTCAAATTGTTAACACGTTGATAATTATCTTTTATTTTTCTTCTAGTTCGATAACATCAGGAAACATAATATGTGAGTACTCATTTGATCATTATGAACATAATTATAAATTGCTTTTCCAAAGCATGCCTTTTCGTTTAACTGAAACAACAATCCATTAAGTTCTCTAAGTGAACAAACATAGATATTCTATCTTCCAAAACCCAAACTTTCATGTTATTTTTTTAGTACAACAAATGTATGAAGTATAGGAGTTTGAATTTCCAACTCC ATGGAAGGATTGCAGCAAATGGGGCTTCCAGTTCTCGGAATTGTTGCAGCTGCAGCCATTACCTTCTACGTCGTAAGCTTTTCTGAGCTTCGAGAGAAATCATTCAGAGATTTGGATGAAGCAGAGGATGAGAATGGAGGATTTAAGATGACTTCAAGTTCAAGAGAAAGGCGAGCTAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRARRKAEKEAKR Homology
BLAST of Lcy11g006980.1 vs. ExPASy TrEMBL
Match: A0A6J1C3G9 (uncharacterized protein LOC111008135 OS=Momordica charantia OX=3673 GN=LOC111008135 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23 Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. ExPASy TrEMBL
Match: A0A1S3BRZ5 (uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=4 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22 Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. ExPASy TrEMBL
Match: A0A5D3CYP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002830 PE=4 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22 Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. ExPASy TrEMBL
Match: A0A0A0KVD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 9.5e-22 Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. ExPASy TrEMBL
Match: A0A6J1J6A4 (uncharacterized protein LOC111482149 OS=Cucurbita maxima OX=3661 GN=LOC111482149 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21 Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. NCBI nr
Match: XP_022136426.1 (uncharacterized protein LOC111008135 [Momordica charantia]) HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23 Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. NCBI nr
Match: XP_038900556.1 (uncharacterized protein LOC120087738 [Benincasa hispida]) HSP 1 Score: 114.0 bits (284), Expect = 5.1e-22 Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. NCBI nr
Match: XP_008451897.1 (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451899.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451900.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_016901164.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >KAA0044991.1 uncharacterized protein E6C27_scaffold74G003010 [Cucumis melo var. makuwa] >TYK16480.1 uncharacterized protein E5676_scaffold21G002830 [Cucumis melo var. makuwa]) HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21 Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. NCBI nr
Match: XP_023545078.1 (uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo] >KAG6600446.1 hypothetical protein SDJN03_05679, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21 Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. NCBI nr
Match: XP_004147735.1 (uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 uncharacterized protein LOC101211279 [Cucumis sativus] >KGN53493.1 hypothetical protein Csa_014484 [Cucumis sativus]) HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21 Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0
BLAST of Lcy11g006980.1 vs. TAIR 10
Match: AT3G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.0 bits (175), Expect = 2.1e-13 Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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