Lcy11g006980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g006980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transmembrane protein
Location	Chr11: 7105886 .. 7107591 (+)
RNA-Seq Expression	Lcy11g006980
Synteny	Lcy11g006980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATATTATCCCTTTTCAAAAGGAAACTCCATAGAAACTTAGCCTGAAATCAGTGAAGCAGAGACTCTTCGATACTCGTTCGTAGAGAAAGCGAAGGCGAAATTTGAAGAAAAAGGAAGACGAAAATGGAAGGATTGCAGCAAATGGGGCTTCCAGTTCTCGGAATTGTTGCAGCTGCAGCCATTACCTTCTACGTCGTAAGCTTTTCTGAGCTTCGAGAGGTACCTTTCTTCTTCTTCTTTCTCTCCTCCCCAAACCCTAGCTTTCTCTTCGATAAATTTCTATATGTTCTATACCCTTACAACATTTGAATTCATTTGATATTCAATATTTCAAGTCTATAATCTCCAAGACATCTCGATTGCTGGGATATGATTTTAGATTATTGTGGTTTTATTCATAATCTCAAGTTAATCATTTAAGTCCCGCTTTATAGTTGTTTGGTTTTTGGTTTTCGGGTTTTGAAAGTTAGGTTTGTTTTCTCTTAATTTCCTTATCATGATTCTCATTTTCTTAAGAAAACACTCGGATTTTGAATTCTTAGCCAAATTATGAAAATAAAAACAAGTATTTGAAAACACTTTTAAATTTCAAAACTTGACTTAGTTTTTTAAAATACGAGAGAAGGTAGTTAATAAAACAAAGAGACTGCTAAGTGAAAGTAGTGTTTATAAGTTTAATTTTTAAAAATCAAAAATTAAAAATCTAATGGTTGTGGAACGAGATTTTAGTTTTCAAAATTTGACTTAATTTGAATGTAGATAATAAAATAAATAAATTTATAGGTTTATAAGCCTATTTTTGAAAGTTTTATTAGGATTCATATCTTTCATTAAAGCTTGGCAAACATTATTGATGTTGGTGAGAGTTGATTGAAATGCAATGATTAGTTACTTTTAAGACTTGGAATTATAAAACCAATTACTATGTGAAGAAGAAGAACTTTTATTGATTTTTCCTGCATGAACGCTATAGTTTGTTGTTTATTTTGAGAGTATTTGAGTGAATATGTTTTGCCACACTTAAAAAAATAATAATAATAATAAAATAAAATATAGAAATTTAATGGTTTTGTTTTAAATTTGGGGAATGTGAAGAAATCATTCAGAGATTTGGATGAAGCAGAGGATGAGAATGGAGGATTTAAGATGACTTCAAGTTCAAGAGAAAGGCGAGCTAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGAGAGTTTTTCTTAGTTCTCAGGTTTTTTTGACTTTCTTTAAAGATCTGTAAGATAATTTGCCTCTTTTATAAGCTTTGATTTCTTATTTTGGAGGGTACACCATTTAACTTCAAATCCGTAATGCTAACTTGAACATAACTTAAATGTAAGTCATACATCCTCGATCAAGAGGTCAAAGGATCAAGTCTTCACTCCAACATTTCTAGAACTCAAAAATAAAGTCTTCAAATTGTTAACACGTTGATAATTATCTTTTATTTTTCTTCTAGTTCGATAACATCAGGAAACATAATATGTGAGTACTCATTTGATCATTATGAACATAATTATAAATTGCTTTTCCAAAGCATGCCTTTTCGTTTAACTGAAACAACAATCCATTAAGTTCTCTAAGTGAACAAACATAGATATTCTATCTTCCAAAACCCAAACTTTCATGTTATTTTTTTAGTACAACAAATGTATGAAGTATAGGAGTTTGAATTTCCAACTCC

mRNA sequence

CTTATATTATCCCTTTTCAAAAGGAAACTCCATAGAAACTTAGCCTGAAATCAGTGAAGCAGAGACTCTTCGATACTCGTTCGTAGAGAAAGCGAAGGCGAAATTTGAAGAAAAAGGAAGACGAAAATGGAAGGATTGCAGCAAATGGGGCTTCCAGTTCTCGGAATTGTTGCAGCTGCAGCCATTACCTTCTACGTCGTAAGCTTTTCTGAGCTTCGAGAGAAATCATTCAGAGATTTGGATGAAGCAGAGGATGAGAATGGAGGATTTAAGATGACTTCAAGTTCAAGAGAAAGGCGAGCTAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGAGAGTTTTTCTTAGTTCTCAGGTTTTTTTGACTTTCTTTAAAGATCTGTAAGATAATTTGCCTCTTTTATAAGCTTTGATTTCTTATTTTGGAGGGTACACCATTTAACTTCAAATCCGTAATGCTAACTTGAACATAACTTAAATGTAAGTCATACATCCTCGATCAAGAGGTCAAAGGATCAAGTCTTCACTCCAACATTTCTAGAACTCAAAAATAAAGTCTTCAAATTGTTAACACGTTGATAATTATCTTTTATTTTTCTTCTAGTTCGATAACATCAGGAAACATAATATGTGAGTACTCATTTGATCATTATGAACATAATTATAAATTGCTTTTCCAAAGCATGCCTTTTCGTTTAACTGAAACAACAATCCATTAAGTTCTCTAAGTGAACAAACATAGATATTCTATCTTCCAAAACCCAAACTTTCATGTTATTTTTTTAGTACAACAAATGTATGAAGTATAGGAGTTTGAATTTCCAACTCC

Coding sequence (CDS)

ATGGAAGGATTGCAGCAAATGGGGCTTCCAGTTCTCGGAATTGTTGCAGCTGCAGCCATTACCTTCTACGTCGTAAGCTTTTCTGAGCTTCGAGAGAAATCATTCAGAGATTTGGATGAAGCAGAGGATGAGAATGGAGGATTTAAGATGACTTCAAGTTCAAGAGAAAGGCGAGCTAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Protein sequence

MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRARRKAEKEAKR

Homology

[Close]

BLAST of Lcy11g006980 vs. ExPASy TrEMBL
Match: A0A6J1C3G9 (uncharacterized protein LOC111008135 OS=Momordica charantia OX=3673 GN=LOC111008135 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQQ+G+PVLGIVAAAAITFY VSF+ELREKSF+DLDE+EDENGGFKMTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. ExPASy TrEMBL
Match: A0A1S3BRZ5 (uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQ+MG+P+LGIVAAAAITFY VSFSELREKSF+DLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. ExPASy TrEMBL
Match: A0A5D3CYP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002830 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQ+MG+P+LGIVAAAAITFY VSFSELREKSF+DLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. ExPASy TrEMBL
Match: A0A0A0KVD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.5e-22
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQ+MG+P+LGIVAAAAITFY VSFSELREKSF+DLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. ExPASy TrEMBL
Match: A0A6J1J6A4 (uncharacterized protein LOC111482149 OS=Cucurbita maxima OX=3661 GN=LOC111482149 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQQ G+P++GIVAAAAITFY VSFSE+REKSFRDLDE+EDEN GFKMT+SSRERRAR
Sbjct: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. NCBI nr
Match: XP_022136426.1 (uncharacterized protein LOC111008135 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 62/69 (89.86%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQQ+G+PVLGIVAAAAITFY VSF+ELREKSF+DLDE+EDENGGFKMTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. NCBI nr
Match: XP_038900556.1 (uncharacterized protein LOC120087738 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 5.1e-22
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQ+MG+P+LGIVAAAAITFY VSFSELREKSFRDLDE+ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFRDLDESEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. NCBI nr
Match: XP_008451897.1 (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451899.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451900.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_016901164.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >KAA0044991.1 uncharacterized protein E6C27_scaffold74G003010 [Cucumis melo var. makuwa] >TYK16480.1 uncharacterized protein E5676_scaffold21G002830 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQ+MG+P+LGIVAAAAITFY VSFSELREKSF+DLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. NCBI nr
Match: XP_023545078.1 (uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo] >KAG6600446.1 hypothetical protein SDJN03_05679, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQQ+G+P++GIVAAAAITFY VSFSE+REKSFRDLDE+EDEN GFKMT+SSRERRAR
Sbjct: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. NCBI nr
Match: XP_004147735.1 (uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 uncharacterized protein LOC101211279 [Cucumis sativus] >KGN53493.1 hypothetical protein Csa_014484 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          M+GLQ+MG+P+LGIVAAAAITFY VSFSELREKSF+DLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of Lcy11g006980 vs. TAIR 10
Match: AT3G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-13
Identity = 38/66 (57.58%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MEGLQQMGLPVLGIVAAAAITFYVVSFSELREKSFRDLDEAEDENGGFKMTSSSRERRAR 60
          MEG+  + LPVLGIVA + +TFY VSF+E+REKSF+D+ ++E+E  GFK + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENE-VGFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

The following BLAST results are available for this feature:

BLAST of Lcy11g006980 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g006980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3G9	1.7e-23	89.86	uncharacterized protein LOC111008135 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A1S3BRZ5	5.6e-22	85.51	uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=...	[more]
A0A5D3CYP3	5.6e-22	85.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KVD4	9.5e-22	85.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1	[more]
A0A6J1J6A4	1.6e-21	85.51	uncharacterized protein LOC111482149 OS=Cucurbita maxima OX=3661 GN=LOC111482149...	[more]

BLAST of Lcy11g006980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136426.1	3.6e-23	89.86	uncharacterized protein LOC111008135 [Momordica charantia]	[more]
XP_038900556.1	5.1e-22	86.96	uncharacterized protein LOC120087738 [Benincasa hispida]	[more]
XP_008451897.1	1.1e-21	85.51	PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 P...	[more]
XP_023545078.1	1.1e-21	85.51	uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo] >KAG6600446.1 ...	[more]
XP_004147735.1	2.0e-21	85.51	uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 uncharact...	[more]

BLAST of Lcy11g006980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22210.1	2.1e-13	57.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..69
None	No IPR available	PANTHER	PTHR37225	OSJNBA0011F23.3 PROTEIN	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g006980.1	Lcy11g006980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane