Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAGAGAGAGATGGAGATGAAAAACAAGGTTGCTTTGGTGGCTATGGTGGTTGTAATGGTGGTCATTGCTCAATCCGCCACCGCCATCGCCGCCGTGGACGAGGCGATTCAGCTCACCTCCGACGCCGGTACACCGAGAGTCTGTCCTGCTACGATCTTGCCATGCAAAACTGACTCAGAGTGCTCTCCATGCCGCTGCAGTGATAATGGCTCCTGCGTTTGAAAACAAAACAAGAAGATAATAAAGAACAGATTGTCCTATAAATGTCTATTCAGCCATGGCGTTTTTTTTTTTTTTTT
mRNA sequence
GGAAAAGAGAGAGATGGAGATGAAAAACAAGGTTGCTTTGGTGGCTATGGTGGTTGTAATGGTGGTCATTGCTCAATCCGCCACCGCCATCGCCGCCGTGGACGAGGCGATTCAGCTCACCTCCGACGCCGGTACACCGAGAGTCTGTCCTGCTACGATCTTGCCATGCAAAACTGACTCAGAGTGCTCTCCATGCCGCTGCAGTGATAATGGCTCCTGCGTTTGAAAACAAAACAAGAAGATAATAAAGAACAGATTGTCCTATAAATGTCTATTCAGCCATGGCGTTTTTTTTTTTTTTTT
Coding sequence (CDS)
ATGGAGATGAAAAACAAGGTTGCTTTGGTGGCTATGGTGGTTGTAATGGTGGTCATTGCTCAATCCGCCACCGCCATCGCCGCCGTGGACGAGGCGATTCAGCTCACCTCCGACGCCGGTACACCGAGAGTCTGTCCTGCTACGATCTTGCCATGCAAAACTGACTCAGAGTGCTCTCCATGCCGCTGCAGTGATAATGGCTCCTGCGTTTGA
Protein sequence
MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSPCRCSDNGSCV
Homology
BLAST of Lcy11g004580.1 vs. ExPASy TrEMBL
Match:
A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
MEMKNK ALVAMVV MVV+AQS T I A DE I+L+ T RVCPATILPCKTDSECSP
Sbjct: 1 MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATILPCKTDSECSP 60
Query: 61 CRCS-DNGSCV 71
C C+ +GSC+
Sbjct: 61 CICNLQSGSCI 70
BLAST of Lcy11g004580.1 vs. ExPASy TrEMBL
Match:
A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
MEMKNK ALVAMVV MVV+AQS T I A DE I+++ T RVCPATILPCKTDSECSP
Sbjct: 1 MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEVSGGENTARVCPATILPCKTDSECSP 60
Query: 61 CRCS-DNGSCV 71
C C+ +GSC+
Sbjct: 61 CICNLQSGSCI 70
BLAST of Lcy11g004580.1 vs. ExPASy TrEMBL
Match:
A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGT--------PRVCPATILPC 60
MEMKNKVALVAMVVVMVV+ +SAT AA+DE I+L ++ PRVCP ILPC
Sbjct: 1 MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
Query: 61 KTDSECSPCRCSDNGSCV 71
KTDSECSPC C +NGSC+
Sbjct: 61 KTDSECSPCYC-NNGSCI 77
BLAST of Lcy11g004580.1 vs. ExPASy TrEMBL
Match:
A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
MEMKNK ALVAMVV MVV+AQS T I A DE I+L+ T RVCPAT+LPC+TDSECSP
Sbjct: 1 MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATLLPCETDSECSP 60
Query: 61 CRCS-DNGSCV 71
C C+ +G+CV
Sbjct: 61 CICNVKSGACV 70
BLAST of Lcy11g004580.1 vs. NCBI nr
Match:
KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])
HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
MEMKNK ALVAMVV MVV+AQS T I A DE I+L+ T RVCPATILPCKTDSECSP
Sbjct: 1 MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATILPCKTDSECSP 60
Query: 61 CRCS-DNGSCV 71
C C+ +GSC+
Sbjct: 61 CICNLQSGSCI 70
BLAST of Lcy11g004580.1 vs. NCBI nr
Match:
TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])
HSP 1 Score: 84.0 bits (206), Expect = 5.8e-13
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
MEMKNK ALVAMVV MVV+AQS T I A DE I+++ T RVCPATILPCKTDSECSP
Sbjct: 1 MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEVSGGENTARVCPATILPCKTDSECSP 60
Query: 61 CRCS-DNGSCV 71
C C+ +GSC+
Sbjct: 61 CICNLQSGSCI 70
BLAST of Lcy11g004580.1 vs. NCBI nr
Match:
KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])
HSP 1 Score: 83.2 bits (204), Expect = 9.9e-13
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGT--------PRVCPATILPC 60
MEMKNKVALVAMVVVMVV+ +SAT AA+DE I+L ++ PRVCP ILPC
Sbjct: 1 MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
Query: 61 KTDSECSPCRCSDNGSCV 71
KTDSECSPC C +NGSC+
Sbjct: 61 KTDSECSPCYC-NNGSCI 77
BLAST of Lcy11g004580.1 vs. NCBI nr
Match:
KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])
HSP 1 Score: 81.6 bits (200), Expect = 2.9e-12
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 1 MEMKNKVALVAMVVVMVVIAQSATAIAAVDEAIQLTSDAGTPRVCPATILPCKTDSECSP 60
MEMKNK ALVAMVV MVV+AQS T I A DE I+L+ T RVCPAT+LPC+TDSECSP
Sbjct: 1 MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIELSGGENTARVCPATLLPCETDSECSP 60
Query: 61 CRCS-DNGSCV 71
C C+ +G+CV
Sbjct: 61 CICNVKSGACV 70
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TRY5 | 1.3e-13 | 70.42 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3E1Q5 | 2.8e-13 | 69.01 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KY39 | 4.8e-13 | 64.10 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1 | [more] |
A0A0A0KWE9 | 1.4e-12 | 67.61 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAA0044341.1 | 2.6e-13 | 70.42 | hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa] | [more] |
TYK29470.1 | 5.8e-13 | 69.01 | hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa] | [more] |
KGN52766.1 | 9.9e-13 | 64.10 | hypothetical protein Csa_015422 [Cucumis sativus] | [more] |
KGN52767.1 | 2.9e-12 | 67.61 | hypothetical protein Csa_015168 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Lcy11g004580.1.utr5p1 | Lcy11g004580.1.utr5p1 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Lcy11g004580.1.exon1 | Lcy11g004580.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Lcy11g004580.1.cds1 | Lcy11g004580.1.cds1 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Lcy11g004580.1.utr3p1 | Lcy11g004580.1.utr3p1 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Lcy11g004580.1 | Lcy11g004580.1-protein | polypeptide |