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Lcy10g018560.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAACTGCGTGTTGAAAGGCCCGGGAGAAAGGGACGATGTGGTCAAAGTGGTCACCGCCGATGGCGGAATCATGGAGCTCTTCACGCCAATCACGGCCGAGTGCATAACCGGTGAATATCCAGGCCACGCCATTTTCAAAAGCCGAAGCATATTCTCGGAGCCCCTTCTCCACAAGGACGACCTTCACGCCGGCCAGGTCTACTATCTCCTCCCGCTGAACCCCTACAAGCCCTCCGAGGTCGACACGCCCACCATCGTATCGACGCCGTATCGCATGTCCACGTGCGAGACACAGATCGCGGCGGCGAAGAAGCGGGCGGAGGCGGAGGTGTTCCCCAAGTACAGTAGCACGGGTGTGTGGAAGGTGAAGCTGGTGATCAGCCCGGAACAGCTCTCCGAGATTTTGTCGCAGGACAATCGCACCGAGGAGTTGATCGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGGCGTAGGATCTGCTGCCAACTCGGACCATTCCAGCGTGGCAGGTAGTTGGAAGGGGTCCGCCCTGGATAAGCCGCAGTATGGGTTGAAATGA ATGGGAAACTGCGTGTTGAAAGGCCCGGGAGAAAGGGACGATGTGGTCAAAGTGGTCACCGCCGATGGCGGAATCATGGAGCTCTTCACGCCAATCACGGCCGAGTGCATAACCGGTGAATATCCAGGCCACGCCATTTTCAAAAGCCGAAGCATATTCTCGGAGCCCCTTCTCCACAAGGACGACCTTCACGCCGGCCAGGTCTACTATCTCCTCCCGCTGAACCCCTACAAGCCCTCCGAGGTCGACACGCCCACCATCGTATCGACGCCGTATCGCATGTCCACGTGCGAGACACAGATCGCGGCGGCGAAGAAGCGGGCGGAGGCGGAGGTGTTCCCCAAGTACAGTAGCACGGGTGTGTGGAAGGTGAAGCTGGTGATCAGCCCGGAACAGCTCTCCGAGATTTTGTCGCAGGACAATCGCACCGAGGAGTTGATCGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGGCGTAGGATCTGCTGCCAACTCGGACCATTCCAGCGTGGCAGGTAGTTGGAAGGGGTCCGCCCTGGATAAGCCGCAGTATGGGTTGAAATGA ATGGGAAACTGCGTGTTGAAAGGCCCGGGAGAAAGGGACGATGTGGTCAAAGTGGTCACCGCCGATGGCGGAATCATGGAGCTCTTCACGCCAATCACGGCCGAGTGCATAACCGGTGAATATCCAGGCCACGCCATTTTCAAAAGCCGAAGCATATTCTCGGAGCCCCTTCTCCACAAGGACGACCTTCACGCCGGCCAGGTCTACTATCTCCTCCCGCTGAACCCCTACAAGCCCTCCGAGGTCGACACGCCCACCATCGTATCGACGCCGTATCGCATGTCCACGTGCGAGACACAGATCGCGGCGGCGAAGAAGCGGGCGGAGGCGGAGGTGTTCCCCAAGTACAGTAGCACGGGTGTGTGGAAGGTGAAGCTGGTGATCAGCCCGGAACAGCTCTCCGAGATTTTGTCGCAGGACAATCGCACCGAGGAGTTGATCGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGGCGTAGGATCTGCTGCCAACTCGGACCATTCCAGCGTGGCAGGTAGTTGGAAGGGGTCCGCCCTGGATAAGCCGCAGTATGGGTTGAAATGA MGNCVLKGPGERDDVVKVVTADGGIMELFTPITAECITGEYPGHAIFKSRSIFSEPLLHKDDLHAGQVYYLLPLNPYKPSEVDTPTIVSTPYRMSTCETQIAAAKKRAEAEVFPKYSSTGVWKVKLVISPEQLSEILSQDNRTEELIENVRTVAKCGNGVGSAANSDHSSVAGSWKGSALDKPQYGLK Homology
BLAST of Lcy10g018560.1 vs. ExPASy TrEMBL
Match: A0A6J1IAU7 (uncharacterized protein LOC111472889 OS=Cucurbita maxima OX=3661 GN=LOC111472889 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 3.9e-86 Identity = 167/194 (86.08%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. ExPASy TrEMBL
Match: A0A6J1IIP8 (uncharacterized protein LOC111474379 OS=Cucurbita maxima OX=3661 GN=LOC111474379 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 3.9e-86 Identity = 167/194 (86.08%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. ExPASy TrEMBL
Match: A0A6J1HDL7 (uncharacterized protein LOC111462928 OS=Cucurbita moschata OX=3662 GN=LOC111462928 PE=4 SV=1) HSP 1 Score: 326.6 bits (836), Expect = 6.7e-86 Identity = 166/194 (85.57%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. ExPASy TrEMBL
Match: A0A6J1CTQ7 (uncharacterized protein LOC111014247 OS=Momordica charantia OX=3673 GN=LOC111014247 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.0e-74 Identity = 149/182 (81.87%), Postives = 160/182 (87.91%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. ExPASy TrEMBL
Match: A0A5D3DB01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00320 PE=4 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 1.1e-61 Identity = 128/194 (65.98%), Postives = 150/194 (77.32%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. NCBI nr
Match: XP_023540170.1 (uncharacterized protein LOC111800623 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 330.9 bits (847), Expect = 7.3e-87 Identity = 168/194 (86.60%), Postives = 175/194 (90.21%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. NCBI nr
Match: KAG7028490.1 (hypothetical protein SDJN02_09671, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86 Identity = 168/194 (86.60%), Postives = 175/194 (90.21%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. NCBI nr
Match: XP_022975258.1 (uncharacterized protein LOC111474379 [Cucurbita maxima]) HSP 1 Score: 327.4 bits (838), Expect = 8.1e-86 Identity = 167/194 (86.08%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. NCBI nr
Match: XP_022974256.1 (uncharacterized protein LOC111472889 [Cucurbita maxima]) HSP 1 Score: 327.4 bits (838), Expect = 8.1e-86 Identity = 167/194 (86.08%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. NCBI nr
Match: XP_022962561.1 (uncharacterized protein LOC111462928 [Cucurbita moschata]) HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85 Identity = 166/194 (85.57%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. TAIR 10
Match: AT3G61920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 158.3 bits (399), Expect = 6.0e-39 Identity = 97/193 (50.26%), Postives = 121/193 (62.69%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. TAIR 10
Match: AT1G64700.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21 Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 7.5e-05 Identity = 43/171 (25.15%), Postives = 70/171 (40.94%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 ) HSP 1 Score: 44.7 bits (104), Expect = 9.7e-05 Identity = 26/95 (27.37%), Postives = 43/95 (45.26%), Query Frame = 0
BLAST of Lcy10g018560.1 vs. TAIR 10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection. ) HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04 Identity = 35/147 (23.81%), Postives = 69/147 (46.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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