
Lcy08g015640.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTACCTTAGTAGATTAATCGAGGCTGCTGAAAAGAAAGGTCTCGTATCTGGAGTTGTTATGGGGGATATTTCTGTCACACACCTTTTATTTGCTGATGATATTTTACTTTTTGTTCAAGATGATGACAAAGCCATTGAAAATATGTATCTCATCATTAAGCCTTTTGAACAAGGTTCTGGTTTGCGTATAAATCTCAACAAATCCACTATCTCTGGTATCAACCTGTCGAACCAAAGAACATCTGAGATCGCATCTTATTGGCGCTGTAATCCTCACCCCCTGCCTATTGAATATCTTGGTGCTCCTTTGGGTGGAATTCCAAAGAACAGTCAGTTTTGGGAGCCCATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGTTTGTATCTCTTTCTAAAGGAGGTCGTCTCACTCTTATCCACTCGGTTCTCAAGAGTATGCCCCTCTACATTCTCTCGGTTTTCAAAGCTCCAGAGTCTATCTGCAACATAA ATGGATTACCTTAGTAGATTAATCGAGGCTGCTGAAAAGAAAGGTCTCGTATCTGGAGTTGTTATGGGGGATATTTCTGTCACACACCTTTTATTTGCTGATGATATTTTACTTTTTGTTCAAGATGATGACAAAGCCATTGAAAATATGTATCTCATCATTAAGCCTTTTGAACAAGGTTCTGGTTTGCGTATAAATCTCAACAAATCCACTATCTCTGGTATCAACCTGTCGAACCAAAGAACATCTGAGATCGCATCTTATTGGCGCTGTAATCCTCACCCCCTGCCTATTGAATATCTTGGTGCTCCTTTGGGTGGAATTCCAAAGAACAGTCAGTTTTGGGAGCCCATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGTTTGTATCTCTTTCTAAAGGAGGTCGTCTCACTCTTATCCACTCGGTTCTCAAGAGTATGCCCCTCTACATTCTCTCGGTTTTCAAAGCTCCAGAGTCTATCTGCAACATAA ATGGATTACCTTAGTAGATTAATCGAGGCTGCTGAAAAGAAAGGTCTCGTATCTGGAGTTGTTATGGGGGATATTTCTGTCACACACCTTTTATTTGCTGATGATATTTTACTTTTTGTTCAAGATGATGACAAAGCCATTGAAAATATGTATCTCATCATTAAGCCTTTTGAACAAGGTTCTGGTTTGCGTATAAATCTCAACAAATCCACTATCTCTGGTATCAACCTGTCGAACCAAAGAACATCTGAGATCGCATCTTATTGGCGCTGTAATCCTCACCCCCTGCCTATTGAATATCTTGGTGCTCCTTTGGGTGGAATTCCAAAGAACAGTCAGTTTTGGGAGCCCATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGTTTGTATCTCTTTCTAAAGGAGGTCGTCTCACTCTTATCCACTCGGTTCTCAAGAGTATGCCCCTCTACATTCTCTCGGTTTTCAAAGCTCCAGAGTCTATCTGCAACATAA MDYLSRLIEAAEKKGLVSGVVMGDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQGSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMIEKIQRRIHNWRLYLFLKEVVSLLSTRFSRVCPSTFSRFSKLQSLSAT Homology
BLAST of Lcy08g015640.1 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 4.4e-06 Identity = 33/129 (25.58%), Postives = 66/129 (51.16%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04 Identity = 27/123 (21.95%), Postives = 59/123 (47.97%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 5.1e-29 Identity = 61/131 (46.56%), Postives = 95/131 (72.52%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. ExPASy TrEMBL
Match: A0A5D3BUZ3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00050 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28 Identity = 60/131 (45.80%), Postives = 93/131 (70.99%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. ExPASy TrEMBL
Match: A0A5A7TQI1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001110 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28 Identity = 60/131 (45.80%), Postives = 92/131 (70.23%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. ExPASy TrEMBL
Match: A0A5A7VMW0 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001520 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 4.3e-28 Identity = 60/131 (45.80%), Postives = 94/131 (71.76%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. ExPASy TrEMBL
Match: A0A5D3C3M3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003160 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28 Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. NCBI nr
Match: TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 137.5 bits (345), Expect = 1.0e-28 Identity = 61/131 (46.56%), Postives = 95/131 (72.52%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. NCBI nr
Match: KAA0037445.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01919.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 135.2 bits (339), Expect = 5.2e-28 Identity = 60/131 (45.80%), Postives = 93/131 (70.99%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. NCBI nr
Match: KAA0045138.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK23599.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 134.8 bits (338), Expect = 6.8e-28 Identity = 60/131 (45.80%), Postives = 92/131 (70.23%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. NCBI nr
Match: KAA0066579.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 134.4 bits (337), Expect = 8.9e-28 Identity = 60/131 (45.80%), Postives = 94/131 (71.76%), Query Frame = 0
BLAST of Lcy08g015640.1 vs. NCBI nr
Match: TYK05808.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 134.0 bits (336), Expect = 1.2e-27 Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|