Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTACCTTAGTAGATTAATCGAGGCTGCTGAAAAGAAAGGTCTCGTATCTGGAGTTGTTATGGGGGATATTTCTGTCACACACCTTTTATTTGCTGATGATATTTTACTTTTTGTTCAAGATGATGACAAAGCCATTGAAAATATGTATCTCATCATTAAGCCTTTTGAACAAGGTTCTGGTTTGCGTATAAATCTCAACAAATCCACTATCTCTGGTATCAACCTGTCGAACCAAAGAACATCTGAGATCGCATCTTATTGGCGCTGTAATCCTCACCCCCTGCCTATTGAATATCTTGGTGCTCCTTTGGGTGGAATTCCAAAGAACAGTCAGTTTTGGGAGCCCATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGTTTGTATCTCTTTCTAAAGGAGGTCGTCTCACTCTTATCCACTCGGTTCTCAAGAGTATGCCCCTCTACATTCTCTCGGTTTTCAAAGCTCCAGAGTCTATCTGCAACATAA
mRNA sequence
ATGGATTACCTTAGTAGATTAATCGAGGCTGCTGAAAAGAAAGGTCTCGTATCTGGAGTTGTTATGGGGGATATTTCTGTCACACACCTTTTATTTGCTGATGATATTTTACTTTTTGTTCAAGATGATGACAAAGCCATTGAAAATATGTATCTCATCATTAAGCCTTTTGAACAAGGTTCTGGTTTGCGTATAAATCTCAACAAATCCACTATCTCTGGTATCAACCTGTCGAACCAAAGAACATCTGAGATCGCATCTTATTGGCGCTGTAATCCTCACCCCCTGCCTATTGAATATCTTGGTGCTCCTTTGGGTGGAATTCCAAAGAACAGTCAGTTTTGGGAGCCCATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGTTTGTATCTCTTTCTAAAGGAGGTCGTCTCACTCTTATCCACTCGGTTCTCAAGAGTATGCCCCTCTACATTCTCTCGGTTTTCAAAGCTCCAGAGTCTATCTGCAACATAA
Coding sequence (CDS)
ATGGATTACCTTAGTAGATTAATCGAGGCTGCTGAAAAGAAAGGTCTCGTATCTGGAGTTGTTATGGGGGATATTTCTGTCACACACCTTTTATTTGCTGATGATATTTTACTTTTTGTTCAAGATGATGACAAAGCCATTGAAAATATGTATCTCATCATTAAGCCTTTTGAACAAGGTTCTGGTTTGCGTATAAATCTCAACAAATCCACTATCTCTGGTATCAACCTGTCGAACCAAAGAACATCTGAGATCGCATCTTATTGGCGCTGTAATCCTCACCCCCTGCCTATTGAATATCTTGGTGCTCCTTTGGGTGGAATTCCAAAGAACAGTCAGTTTTGGGAGCCCATGATCGAGAAGATTCAGCGAAGAATTCACAATTGGCGTTTGTATCTCTTTCTAAAGGAGGTCGTCTCACTCTTATCCACTCGGTTCTCAAGAGTATGCCCCTCTACATTCTCTCGGTTTTCAAAGCTCCAGAGTCTATCTGCAACATAA
Protein sequence
MDYLSRLIEAAEKKGLVSGVVMGDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQGSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMIEKIQRRIHNWRLYLFLKEVVSLLSTRFSRVCPSTFSRFSKLQSLSAT
Homology
BLAST of Lcy08g015640 vs. ExPASy Swiss-Prot
Match:
O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 4.4e-06
Identity = 33/129 (25.58%), Postives = 66/129 (51.16%), Query Frame = 0
Query: 4 LSRLIEAAEKKGLVSGVVMGDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQGSGL 63
L L A ++ + G+ +G V LFADD+++++++ + +N+ +I F + SG
Sbjct: 672 LEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGY 731
Query: 64 RINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKN--SQFWEPMIEK 123
+IN+ KS N + Q S+I I+YLG L K+ + ++P++++
Sbjct: 732 KINVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKE 791
Query: 124 IQRRIHNWR 131
I+ + W+
Sbjct: 792 IKEDTNKWK 800
BLAST of Lcy08g015640 vs. ExPASy Swiss-Prot
Match:
P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)
HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04
Identity = 27/123 (21.95%), Postives = 59/123 (47.97%), Query Frame = 0
Query: 10 AAEKKGLVSGVVMGDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQGSGLRINLNK 69
A ++ + G+ +G + LFADD+++++++ + + +IK + SG +IN +K
Sbjct: 677 AIREEKAIKGIHIGSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHK 736
Query: 70 STISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKN--SQFWEPMIEKIQRRIH 129
S +NQ + P ++YLG L K+ + +E + ++I ++
Sbjct: 737 SVAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVN 796
Query: 130 NWR 131
W+
Sbjct: 797 KWK 799
BLAST of Lcy08g015640 vs. ExPASy TrEMBL
Match:
A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 5.1e-29
Identity = 61/131 (46.56%), Postives = 95/131 (72.52%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + G+ +++H+LFADDILLF++D+D ++N+ + + FE+
Sbjct: 1319 MDYLSRLLSHLESSGAIKGVSLNGNCNISHILFADDILLFIEDNDCFLKNLRMALSLFER 1378
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL KS + +N+S +R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 1379 ASGLKINLLKSALVPVNVSLKRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVE 1438
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 1439 DKIQKKLNNWK 1449
BLAST of Lcy08g015640 vs. ExPASy TrEMBL
Match:
A0A5D3BUZ3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00050 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 2.5e-28
Identity = 60/131 (45.80%), Postives = 93/131 (70.99%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + + +++H+LFADDILLF++D+D ++N+ + + FE+
Sbjct: 495 MDYLSRLLSHLESSGAIKGVSLNSNCNISHILFADDILLFIEDNDYFLKNLRMALSLFEK 554
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL KS + +N+S R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 555 ASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVE 614
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 615 DKIQKKLNNWK 625
BLAST of Lcy08g015640 vs. ExPASy TrEMBL
Match:
A0A5A7TQI1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001110 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 60/131 (45.80%), Postives = 92/131 (70.23%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + + +++H+LFADDILLF++D+D + N+ + + FE+
Sbjct: 398 MDYLSRLLSHLESSGAIKGVSLNSNCNISHILFADDILLFIEDNDYFLNNLRMALSLFER 457
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL KS + +N+S R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 458 ASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVE 517
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 518 DKIQKKLNNWK 528
BLAST of Lcy08g015640 vs. ExPASy TrEMBL
Match:
A0A5A7VMW0 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001520 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 4.3e-28
Identity = 60/131 (45.80%), Postives = 94/131 (71.76%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGV-VMGDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV ++ + +++H+LFADDILLF++D+D + N+ + + FE+
Sbjct: 125 MDYLSRLLSHLEASGAIKGVSLINNCNISHILFADDILLFLEDNDFFLNNLRMALFLFEK 184
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL+KS + +N+S R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 185 ASGLKINLSKSALVPVNVSLNRAKECASFWDISCHSLPLSYLGVPLGGNPKSNLFWRNVE 244
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 245 DKIQKKLNNWK 255
BLAST of Lcy08g015640 vs. ExPASy TrEMBL
Match:
A0A5D3C3M3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003160 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28
Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + D +++H+LFADDILLFV+D+D + N+ + + FE+
Sbjct: 1058 MDYLSRLLSHLESSGAIKGVCLANDCNISHILFADDILLFVEDNDHFLNNLRMALSLFEK 1117
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL+KS + +N+S R E AS W + H LP+ YLG PLGG PK++ FW +
Sbjct: 1118 ASGLKINLSKSAMVPVNVSWSRALECASSWGISCHTLPLTYLGVPLGGNPKSNIFWRNIE 1177
Query: 121 EKIQRRIHNW---------RLYLFLKEVVSLLSTRFS--RVCPSTFSRFSKL 161
++IQ++++NW RL L + SL + S + PST+ KL
Sbjct: 1178 DRIQKKLNNWKYAHISKGGRLTLIKSTLSSLSIYQLSVFQAPPSTYKNIEKL 1229
BLAST of Lcy08g015640 vs. NCBI nr
Match:
TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 137.5 bits (345), Expect = 1.0e-28
Identity = 61/131 (46.56%), Postives = 95/131 (72.52%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + G+ +++H+LFADDILLF++D+D ++N+ + + FE+
Sbjct: 1319 MDYLSRLLSHLESSGAIKGVSLNGNCNISHILFADDILLFIEDNDCFLKNLRMALSLFER 1378
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL KS + +N+S +R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 1379 ASGLKINLLKSALVPVNVSLKRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVE 1438
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 1439 DKIQKKLNNWK 1449
BLAST of Lcy08g015640 vs. NCBI nr
Match:
KAA0037445.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01919.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 135.2 bits (339), Expect = 5.2e-28
Identity = 60/131 (45.80%), Postives = 93/131 (70.99%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + + +++H+LFADDILLF++D+D ++N+ + + FE+
Sbjct: 495 MDYLSRLLSHLESSGAIKGVSLNSNCNISHILFADDILLFIEDNDYFLKNLRMALSLFEK 554
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL KS + +N+S R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 555 ASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVE 614
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 615 DKIQKKLNNWK 625
BLAST of Lcy08g015640 vs. NCBI nr
Match:
KAA0045138.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK23599.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.8 bits (338), Expect = 6.8e-28
Identity = 60/131 (45.80%), Postives = 92/131 (70.23%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + + +++H+LFADDILLF++D+D + N+ + + FE+
Sbjct: 398 MDYLSRLLSHLESSGAIKGVSLNSNCNISHILFADDILLFIEDNDYFLNNLRMALSLFER 457
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL KS + +N+S R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 458 ASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVE 517
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 518 DKIQKKLNNWK 528
BLAST of Lcy08g015640 vs. NCBI nr
Match:
KAA0066579.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.4 bits (337), Expect = 8.9e-28
Identity = 60/131 (45.80%), Postives = 94/131 (71.76%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGV-VMGDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV ++ + +++H+LFADDILLF++D+D + N+ + + FE+
Sbjct: 125 MDYLSRLLSHLEASGAIKGVSLINNCNISHILFADDILLFLEDNDFFLNNLRMALFLFEK 184
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL+KS + +N+S R E AS+W + H LP+ YLG PLGG PK++ FW +
Sbjct: 185 ASGLKINLSKSALVPVNVSLNRAKECASFWDISCHSLPLSYLGVPLGGNPKSNLFWRNVE 244
Query: 121 EKIQRRIHNWR 131
+KIQ++++NW+
Sbjct: 245 DKIQKKLNNWK 255
BLAST of Lcy08g015640 vs. NCBI nr
Match:
TYK05808.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 134.0 bits (336), Expect = 1.2e-27
Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = 0
Query: 1 MDYLSRLIEAAEKKGLVSGVVM-GDISVTHLLFADDILLFVQDDDKAIENMYLIIKPFEQ 60
MDYLSRL+ E G + GV + D +++H+LFADDILLFV+D+D + N+ + + FE+
Sbjct: 1058 MDYLSRLLSHLESSGAIKGVCLANDCNISHILFADDILLFVEDNDHFLNNLRMALSLFEK 1117
Query: 61 GSGLRINLNKSTISGINLSNQRTSEIASYWRCNPHPLPIEYLGAPLGGIPKNSQFWEPMI 120
SGL+INL+KS + +N+S R E AS W + H LP+ YLG PLGG PK++ FW +
Sbjct: 1118 ASGLKINLSKSAMVPVNVSWSRALECASSWGISCHTLPLTYLGVPLGGNPKSNIFWRNIE 1177
Query: 121 EKIQRRIHNW---------RLYLFLKEVVSLLSTRFS--RVCPSTFSRFSKL 161
++IQ++++NW RL L + SL + S + PST+ KL
Sbjct: 1178 DRIQKKLNNWKYAHISKGGRLTLIKSTLSSLSIYQLSVFQAPPSTYKNIEKL 1229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O00370 | 4.4e-06 | 25.58 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | [more] |
P08548 | 9.3e-04 | 21.95 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3BLV7 | 5.1e-29 | 46.56 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3BUZ3 | 2.5e-28 | 45.80 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TQI1 | 3.3e-28 | 45.80 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7VMW0 | 4.3e-28 | 45.80 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3C3M3 | 5.6e-28 | 41.86 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
TYJ99315.1 | 1.0e-28 | 46.56 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0037445.1 | 5.2e-28 | 45.80 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK019... | [more] |
KAA0045138.1 | 6.8e-28 | 45.80 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK235... | [more] |
KAA0066579.1 | 8.9e-28 | 45.80 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK05808.1 | 1.2e-27 | 41.86 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |