Lcy03g018660.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy03g018660.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor IBH1-like 1
Location	Chr03: 52371325 .. 52372218 (-)
Sequence length	781
RNA-Seq Expression	Lcy03g018660.1
Synteny	Lcy03g018660.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGATCTCTTGGATCTGTAAATCTTCTGCTTCTCTCTGCCCTCAACTCATCTTAATTTCTCTCTTAATTTTACACTTTTTATCCCTTTTTTTCTCCTCTCATTAAACCACACATTTCTCAGGTATGTTCAACTTTTTCCATTTTTTTTCTTTAATTTTTATACTCAACGTCCCATAGGATTTATCTCTAATTCAATCTCCGGTAACAACTTTTTTTTTTTTAATATGATATCAGAATGCGCAATCCCAGTTCGTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTCAAATATTCACAAGCTCCAAAGAAAACATGACGGTCACCGAGAGAAAGAAGGCCATAAAGTTATCCGCTGACATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCGAGCCGTCATCGCCGGCGCCTCCGTCCACGACGCCACCCGCCTCGTGGCCGACGGCGTACTGGGCCGGGCCGTATGCGAGAGACTCAACCAAAGCAGCCCCAAAATCACACGAATTACGTGGAGTAGTGGGAAGATTCTCAAAAGAAGCCGCGGCGTGCGGCGGAGAGCGGCGGCGAAAAAGAAATGCATGAAGCCGGCGGCGGAGTCGATTGCAAAAAGGTTGGTGCAAAAGAGAACGAAAGTTCTTCGAGGGTTGGTTCCGGGAGGTGAATTTATGGATGAAATTGCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAGGTTGATGTAATGCGGTGTCTTGCAACTGCGTACATACCCTCATCATCATCATGAATACCCAAATATCATTACAATCAATCCCTCTTTCTTTTTTGGCCAACATTCCTATGATGAATGGATGGAGAAAGTTAAGTCTTTTTTTTTTTTTTTTT

mRNA sequence

CTGATCTCTTGGATCTGTAAATCTTCTGCTTCTCTCTGCCCTCAACTCATCTTAATTTCTCTCTTAATTTTACACTTTTTATCCCTTTTTTTCTCCTCTCATTAAACCACACATTTCTCAGAATGCGCAATCCCAGTTCGTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTCAAATATTCACAAGCTCCAAAGAAAACATGACGGTCACCGAGAGAAAGAAGGCCATAAAGTTATCCGCTGACATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCGAGCCGTCATCGCCGGCGCCTCCGTCCACGACGCCACCCGCCTCGTGGCCGACGGCGTACTGGGCCGGGCCGTATGCGAGAGACTCAACCAAAGCAGCCCCAAAATCACACGAATTACGTGGAGTAGTGGGAAGATTCTCAAAAGAAGCCGCGGCGTGCGGCGGAGAGCGGCGGCGAAAAAGAAATGCATGAAGCCGGCGGCGGAGTCGATTGCAAAAAGGTTGGTGCAAAAGAGAACGAAAGTTCTTCGAGGGTTGGTTCCGGGAGGTGAATTTATGGATGAAATTGCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAGGTTGATGTAATGCGGTGTCTTGCAACTGCGTACATACCCTCATCATCATCATGAATACCCAAATATCATTACAATCAATCCCTCTTTCTTTTTTGGCCAACATTCCTATGATGAATGGATGGAGAAAGTTAAGTCTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGCGCAATCCCAGTTCGTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTCAAATATTCACAAGCTCCAAAGAAAACATGACGGTCACCGAGAGAAAGAAGGCCATAAAGTTATCCGCTGACATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCGAGCCGTCATCGCCGGCGCCTCCGTCCACGACGCCACCCGCCTCGTGGCCGACGGCGTACTGGGCCGGGCCGTATGCGAGAGACTCAACCAAAGCAGCCCCAAAATCACACGAATTACGTGGAGTAGTGGGAAGATTCTCAAAAGAAGCCGCGGCGTGCGGCGGAGAGCGGCGGCGAAAAAGAAATGCATGAAGCCGGCGGCGGAGTCGATTGCAAAAAGGTTGGTGCAAAAGAGAACGAAAGTTCTTCGAGGGTTGGTTCCGGGAGGTGAATTTATGGATGAAATTGCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAGGTTGATGTAATGCGGTGTCTTGCAACTGCGTACATACCCTCATCATCATCATGA

Protein sequence

MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAVIAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKCMKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLATAYIPSSSS

Homology

[Close]

BLAST of Lcy03g018660.1 vs. ExPASy Swiss-Prot
Match: Q9M0B9 (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 83/182 (45.60%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  EFLKKW MGLQIF  S +N +V ERKKAIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAGASVHD--ATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKK 120
           I   +  D    R +  G+    +  +      K+ + T    KI++RS+ + RR   K 
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINK------KLPKKTVCHRKIVRRSKKILRR---KS 120

Query: 121 KCMKPAAESIAKRLVQKRTKVLRGLVPGGEFM-DEIALIEETLDYISALQAQVDVMRCLA 180
           K     A + AKRLV++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR + 
Sbjct: 121 KSASEEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIV 173

[Close]

BLAST of Lcy03g018660.1 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.5e-05
Identity = 37/103 (35.92%), Postives = 47/103 (45.63%), Query Frame = 0


Query: 80  RAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKCMKPAAESIAKRLVQKRTKV 139
           RA+  R ++   KI R +    KI  + R   +RA        P  E  A+R        
Sbjct: 69  RALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRA--------PVVEEAAER-------- 128

Query: 140 LRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLATAYIP 183
           LR LVPGG  M+   L+EET  YI  L  QV VM+CL     P
Sbjct: 129 LRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCLVDGLSP 155

[Close]

BLAST of Lcy03g018660.1 vs. ExPASy TrEMBL
Match: A0A6J1JMR3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 9.6e-69
Identity = 145/186 (77.96%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           MRNPSSLKR+FLKKW+MGLQI+T++  NMTV +RK+AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IAG SVHD + LVA+G+LGRAVCER+ QSS KITR +WSSGKILKRSR V RR    KKC
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRR----KKC 120

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLA-TA 180
            KPAAE IA+RLVQKRT+ LRGLVPGGEFMDE++LIEETLDYI ALQ QVDVMRCLA TA
Sbjct: 121 RKPAAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTA 180

Query: 181 YIPSSS 186
           Y+   S
Sbjct: 181 YVAPPS 182

[Close]

BLAST of Lcy03g018660.1 vs. ExPASy TrEMBL
Match: A0A6J1E715 (transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111430013 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.2e-67
Identity = 144/186 (77.42%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKR+FLKKW MGLQI+T++  NMTV +RK+AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IAG SVHD + LVA+GVLGRAVCER+ +SS KITR +WSS KILKRSR V RR    KKC
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRR----KKC 120

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLA-TA 180
            KPAAE IAKRLVQKRT+ LRGLVPGGEFMDE++LIEETLDYI ALQ QVDVMRCLA TA
Sbjct: 121 RKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTA 180

Query: 181 YIPSSS 186
           Y+   S
Sbjct: 181 YVAPPS 182

[Close]

BLAST of Lcy03g018660.1 vs. ExPASy TrEMBL
Match: A0A6J1F0A2 (transcription factor IBH1-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441170 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.9e-65
Identity = 141/185 (76.22%), Postives = 159/185 (85.95%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKREFLKKWMMGL+I+T+S +NMTVT+RK AIKLSADIALASSRNCATRWS+A+
Sbjct: 1   MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 60

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IA  SV D +RLVAD +LGR +       +PKITRI WSSGKI+KRSR V+R    ++KC
Sbjct: 61  IAATSVDDGSRLVADVLLGRTI-------NPKITRIMWSSGKIVKRSRRVQR---MRRKC 120

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLATAY 180
            KPAAE IAK+LV+KR KVLRGLVPGGEFMDEI+LIEETLDYISALQAQVDVMRCLATAY
Sbjct: 121 KKPAAELIAKKLVRKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAY 175

Query: 181 IPSSS 186
           I SSS
Sbjct: 181 IASSS 175

[Close]

BLAST of Lcy03g018660.1 vs. ExPASy TrEMBL
Match: A0A1S3B8V1 (uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64
Identity = 142/187 (75.94%), Postives = 164/187 (87.70%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           M+NP+SLK+EFLKKWMMGLQI+T++ ENMTV ERK AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MQNPNSLKQEFLKKWMMGLQIYTTTNENMTVAERKTAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQ-SSPKITRITWSSGKILKRSRGVRRRAAAKKK 120
           IA +SV + + LVA+GVLGR +CER+ Q S+ KITR +WSSGKI+KRSR V RR   + K
Sbjct: 61  IARSSVDNRSCLVANGVLGRGLCERVKQISNLKITRSSWSSGKIVKRSRRVWRRRRRRNK 120

Query: 121 CMKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLATA 180
           CM  AA +IA+RLVQ+RTKVLRGLVPGGEFMDEI+LIEETLDY+SALQAQVDVMR LA+A
Sbjct: 121 CM--AAVTIARRLVQRRTKVLRGLVPGGEFMDEISLIEETLDYMSALQAQVDVMRFLASA 180

Query: 181 YIPSSSS 187
           Y PSSSS
Sbjct: 181 YNPSSSS 185

[Close]

BLAST of Lcy03g018660.1 vs. ExPASy TrEMBL
Match: A0A6J1HUQ3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111468009 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.1e-64
Identity = 140/185 (75.68%), Postives = 157/185 (84.86%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKREFLKKWMMGL+I+T+S +NMTVT+RK AIKLSADIALASSRNCATRWS+A+
Sbjct: 49  MRNPSCLKREFLKKWMMGLEIYTTSNKNMTVTQRKNAIKLSADIALASSRNCATRWSQAL 108

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IA  SV D +RLVAD +LGR        ++PKITRI WSS KI+KRSR V+R    ++KC
Sbjct: 109 IAATSVDDGSRLVADVLLGRT-------TNPKITRIMWSSVKIVKRSRRVQR---MRRKC 168

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLATAY 180
            KPAAE IAK L +KR KVLRGLVPGGEFMDEI+LIEETLDYISALQAQVDVMRCLATAY
Sbjct: 169 KKPAAELIAKTLARKRRKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLATAY 223

Query: 181 IPSSS 186
           IPSSS
Sbjct: 229 IPSSS 223

[Close]

BLAST of Lcy03g018660.1 vs. NCBI nr
Match: XP_022988593.1 (transcription factor IBH1-like 1 [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-68
Identity = 145/186 (77.96%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           MRNPSSLKR+FLKKW+MGLQI+T++  NMTV +RK+AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IAG SVHD + LVA+G+LGRAVCER+ QSS KITR +WSSGKILKRSR V RR    KKC
Sbjct: 61  IAGTSVHDGSFLVANGLLGRAVCERIKQSSSKITRSSWSSGKILKRSRRVGRR----KKC 120

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLA-TA 180
            KPAAE IA+RLVQKRT+ LRGLVPGGEFMDE++LIEETLDYI ALQ QVDVMRCLA TA
Sbjct: 121 RKPAAEWIARRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTA 180

Query: 181 YIPSSS 186
           Y+   S
Sbjct: 181 YVAPPS 182

[Close]

BLAST of Lcy03g018660.1 vs. NCBI nr
Match: XP_038879866.1 (transcription factor IBH1-like 1 [Benincasa hispida])

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-68
Identity = 155/189 (82.01%), Postives = 166/189 (87.83%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIF-TSSKENMTVTERKKAIKLSADIALASSRNCATRWSRA 60
           MRNPSSLKREFLKKWM GLQI+ TSS ENMTV ERK AIKLSADIALASSRNCATRWSRA
Sbjct: 1   MRNPSSLKREFLKKWMTGLQIYTTSSNENMTVIERKTAIKLSADIALASSRNCATRWSRA 60

Query: 61  VIAGASVHDATRLVADGVLGRAVCERLNQ-SSPKITRITWSSGKILKRSRGVRRRAAAKK 120
           VIA +SV + +R VADGVLGRAVCER+ Q S+ K+TR +WSSG ILKRSR VRRR   + 
Sbjct: 61  VIASSSVDNRSRRVADGVLGRAVCERVKQISNSKMTRSSWSSGMILKRSRRVRRR---RN 120

Query: 121 KCMKP-AAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLA 180
           KCMK  AAES+AKRLV KRTKVLRGLVPGGEFMDEI+LIEETLDYISALQAQVDVMRCLA
Sbjct: 121 KCMKAMAAESVAKRLVLKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRCLA 180

Query: 181 TAYIPSSSS 187
           TAY PSSSS
Sbjct: 181 TAYNPSSSS 186

[Close]

BLAST of Lcy03g018660.1 vs. NCBI nr
Match: KAG7023415.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66
Identity = 144/186 (77.42%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKR+FLKKW MGLQI+T++  NMTV +RK+AIKLSADIALASSRNCATRWSRAV
Sbjct: 9   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 68

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IAG SVHD + LVA+GVLGRAVCER+ +SS KITR +WSS KILKRSR V RR    KKC
Sbjct: 69  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRR----KKC 128

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLA-TA 180
            KPAAE IAKRLVQKRT+ LRGLVPGGEFMDE++LIEETLDYI ALQ QVDVMRCLA TA
Sbjct: 129 RKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTA 188

Query: 181 YIPSSS 186
           Y+   S
Sbjct: 189 YVAPPS 190

[Close]

BLAST of Lcy03g018660.1 vs. NCBI nr
Match: XP_022921880.1 (transcription factor IBH1-like 1 [Cucurbita moschata])

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66
Identity = 144/186 (77.42%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           MRNPS LKR+FLKKW MGLQI+T++  NMTV +RK+AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MRNPSWLKRDFLKKWRMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IAG SVHD + LVA+GVLGRAVCER+ +SS KITR +WSS KILKRSR V RR    KKC
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWSSRKILKRSRRVGRR----KKC 120

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLA-TA 180
            KPAAE IAKRLVQKRT+ LRGLVPGGEFMDE++LIEETLDYI ALQ QVDVMRCLA TA
Sbjct: 121 RKPAAEWIAKRLVQKRTRTLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTA 180

Query: 181 YIPSSS 186
           Y+   S
Sbjct: 181 YVAPPS 182

[Close]

BLAST of Lcy03g018660.1 vs. NCBI nr
Match: XP_023515816.1 (transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.2 bits (666), Expect = 7.0e-66
Identity = 141/186 (75.81%), Postives = 159/186 (85.48%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           M NP+SLKR+FLKKW+MGLQI+T++  NMTV +RK+AIKLSADIALASSRNCATRWSRAV
Sbjct: 1   MSNPNSLKRDFLKKWLMGLQIYTTTNRNMTVADRKRAIKLSADIALASSRNCATRWSRAV 60

Query: 61  IAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKC 120
           IAG SVHD + LVA+GVLGRAVCER+ +SS KITR +W SGKILKRSR V RR    KKC
Sbjct: 61  IAGTSVHDGSFLVANGVLGRAVCERIKESSSKITRSSWCSGKILKRSRRVGRR----KKC 120

Query: 121 MKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLA-TA 180
            K  AE IAKRLVQKRT++LRGLVPGGEFMDE++LIEETLDYI ALQ QVDVMRCLA TA
Sbjct: 121 RKAGAEWIAKRLVQKRTRMLRGLVPGGEFMDEVSLIEETLDYILALQTQVDVMRCLATTA 180

Query: 181 YIPSSS 186
           Y+   S
Sbjct: 181 YVAPPS 182

[Close]

BLAST of Lcy03g018660.1 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 83/182 (45.60%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  EFLKKW MGLQIF  S +N +V ERKKAIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAGASVHD--ATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKK 120
           I   +  D    R +  G+    +  +      K+ + T    KI++RS+ + RR   K 
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINK------KLPKKTVCHRKIVRRSKKILRR---KS 120

Query: 121 KCMKPAAESIAKRLVQKRTKVLRGLVPGGEFM-DEIALIEETLDYISALQAQVDVMRCLA 180
           K     A + AKRLV++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR + 
Sbjct: 121 KSASEEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIV 173

[Close]

BLAST of Lcy03g018660.1 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 83/182 (45.60%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAV 60
           M+  SS+  EFLKKW MGLQIF  S +N +V ERKKAIKLSAD+A+AS R   T WSRA+
Sbjct: 1   MQPTSSMNEEFLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 61  IAGASVHD--ATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKK 120
           I   +  D    R +  G+    +  +      K+ + T    KI++RS+ + RR   K 
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINK------KLPKKTVCHRKIVRRSKKILRR---KS 120

Query: 121 KCMKPAAESIAKRLVQKRTKVLRGLVPGGEFM-DEIALIEETLDYISALQAQVDVMRCLA 180
           K     A + AKRLV++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR + 
Sbjct: 121 KSASEEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIV 173

[Close]

BLAST of Lcy03g018660.1 vs. TAIR 10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-19
Identity = 68/179 (37.99%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 1   MRNPSSLKREFLKKWMMGLQIFTSSKEN-MTVTERKKAIKLSADIALASSRNCATRWSRA 60
           M   + +K+EF+KKW+  L +  SS E+ + VTERK AI+LS+D+A+A++RN +T WSRA
Sbjct: 2   MNTYNMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSRA 61

Query: 61  VIAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKK 120
           +I+ +    A + +A  +L +A                             R R   +  
Sbjct: 62  LISRSGNKTANKPMARRILKKA-----------------------------RNRMKNRCN 121

Query: 121 CMKPAAESIAKRLVQKRTKVLRGLVPGGEFMDE-IALIEETLDYISALQAQVDVMRCLA 178
            ++      AK  V+KRT +L+ LVPGGE +D+   LI ETLDYI  L+AQVDVMR +A
Sbjct: 122 ILRRNGNFTAKTWVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTVA 151

[Close]

BLAST of Lcy03g018660.1 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 49.3 bits (116), Expect = 3.9e-06
Identity = 37/103 (35.92%), Postives = 47/103 (45.63%), Query Frame = 0


Query: 80  RAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKCMKPAAESIAKRLVQKRTKV 139
           RA+  R ++   KI R +    KI  + R   +RA        P  E  A+R        
Sbjct: 69  RALLRRADKDDNKIVRFSRRKWKISSKRRRSNQRA--------PVVEEAAER-------- 128

Query: 140 LRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLATAYIP 183
           LR LVPGG  M+   L+EET  YI  L  QV VM+CL     P
Sbjct: 129 LRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCLVDGLSP 155

[Close]

BLAST of Lcy03g018660.1 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04
Identity = 46/153 (30.07%), Postives = 69/153 (45.10%), Query Frame = 0


Query: 24  SSKENMTVTERKKAIKLSADIALASSRNCATRWSRAVIAGASVHDATRLVADGVLGRAVC 83
           S+  + T  +R KA++ +AD ALA S    T WSRA++       A R+       R   
Sbjct: 75  STSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAIL-------ANRIKLKFRKQRR-- 134

Query: 84  ERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKCMKPAAESIAKRLVQKRTKVLRGL 143
            R   + P +T +  SS      +R  +RR +  +   K   +      V ++ +VL  L
Sbjct: 135 PRATMAIPAMTTVVSSSS-----NRSRKRRVSVLRLNKKSIPD------VNRKVRVLGRL 194

Query: 144 VPGGEFMDEIALIEETLDYISALQAQVDVMRCL 177
           VPG        ++EE  DYI AL+ QV  M  L
Sbjct: 195 VPGCGKQSVPVILEEATDYIQALEMQVRAMNSL 207

The following BLAST results are available for this feature:

BLAST of Lcy03g018660.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B9	1.6e-28	45.60	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]
Q9SKX1	5.5e-05	35.92	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]

BLAST of Lcy03g018660.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMR3	9.6e-69	77.96	transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=...	[more]
A0A6J1E715	5.2e-67	77.42	transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111430013 P...	[more]
A0A6J1F0A2	4.9e-65	76.22	transcription factor IBH1-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A1S3B8V1	2.4e-64	75.94	uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=...	[more]
A0A6J1HUQ3	7.1e-64	75.68	transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111468009 PE=...	[more]

BLAST of Lcy03g018660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988593.1	2.0e-68	77.96	transcription factor IBH1-like 1 [Cucurbita maxima]	[more]
XP_038879866.1	2.0e-68	82.01	transcription factor IBH1-like 1 [Benincasa hispida]	[more]
KAG7023415.1	1.1e-66	77.42	Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022921880.1	1.1e-66	77.42	transcription factor IBH1-like 1 [Cucurbita moschata]	[more]
XP_023515816.1	7.0e-66	75.81	transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy03g018660.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30410.2	1.1e-29	45.60	sequence-specific DNA binding transcription factors	[more]
AT4G30410.1	1.1e-29	45.60	sequence-specific DNA binding transcription factors	[more]
AT5G57780.1	3.1e-19	37.99	EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arab...	[more]
AT2G43060.1	3.9e-06	35.92	ILI1 binding bHLH 1	[more]
AT3G06590.1	1.6e-04	30.07	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF5	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..179
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 5..179
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 130..177 e-value: 1.20012E-12 score: 58.0176

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy03g018660	Lcy03g018660	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g018660.1.exon2	Lcy03g018660.1.exon2	exon
Lcy03g018660.1.exon1	Lcy03g018660.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g018660.1.utr3p1	Lcy03g018660.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g018660.1.cds1	Lcy03g018660.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy03g018660.1.utr5p2	Lcy03g018660.1.utr5p2	five_prime_UTR
Lcy03g018660.1.utr5p1	Lcy03g018660.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy03g018660.1	Lcy03g018660.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding