Lcy03g018660 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGATCTCTTGGATCTGTAAATCTTCTGCTTCTCTCTGCCCTCAACTCATCTTAATTTCTCTCTTAATTTTACACTTTTTATCCCTTTTTTTCTCCTCTCATTAAACCACACATTTCTCAGGTATGTTCAACTTTTTCCATTTTTTTTCTTTAATTTTTATACTCAACGTCCCATAGGATTTATCTCTAATTCAATCTCCGGTAACAACTTTTTTTTTTTTAATATGATATCAGAATGCGCAATCCCAGTTCGTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTCAAATATTCACAAGCTCCAAAGAAAACATGACGGTCACCGAGAGAAAGAAGGCCATAAAGTTATCCGCTGACATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCGAGCCGTCATCGCCGGCGCCTCCGTCCACGACGCCACCCGCCTCGTGGCCGACGGCGTACTGGGCCGGGCCGTATGCGAGAGACTCAACCAAAGCAGCCCCAAAATCACACGAATTACGTGGAGTAGTGGGAAGATTCTCAAAAGAAGCCGCGGCGTGCGGCGGAGAGCGGCGGCGAAAAAGAAATGCATGAAGCCGGCGGCGGAGTCGATTGCAAAAAGGTTGGTGCAAAAGAGAACGAAAGTTCTTCGAGGGTTGGTTCCGGGAGGTGAATTTATGGATGAAATTGCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAGGTTGATGTAATGCGGTGTCTTGCAACTGCGTACATACCCTCATCATCATCATGAATACCCAAATATCATTACAATCAATCCCTCTTTCTTTTTTGGCCAACATTCCTATGATGAATGGATGGAGAAAGTTAAGTCTTTTTTTTTTTTTTTTT CTGATCTCTTGGATCTGTAAATCTTCTGCTTCTCTCTGCCCTCAACTCATCTTAATTTCTCTCTTAATTTTACACTTTTTATCCCTTTTTTTCTCCTCTCATTAAACCACACATTTCTCAGAATGCGCAATCCCAGTTCGTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTCAAATATTCACAAGCTCCAAAGAAAACATGACGGTCACCGAGAGAAAGAAGGCCATAAAGTTATCCGCTGACATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCGAGCCGTCATCGCCGGCGCCTCCGTCCACGACGCCACCCGCCTCGTGGCCGACGGCGTACTGGGCCGGGCCGTATGCGAGAGACTCAACCAAAGCAGCCCCAAAATCACACGAATTACGTGGAGTAGTGGGAAGATTCTCAAAAGAAGCCGCGGCGTGCGGCGGAGAGCGGCGGCGAAAAAGAAATGCATGAAGCCGGCGGCGGAGTCGATTGCAAAAAGGTTGGTGCAAAAGAGAACGAAAGTTCTTCGAGGGTTGGTTCCGGGAGGTGAATTTATGGATGAAATTGCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAGGTTGATGTAATGCGGTGTCTTGCAACTGCGTACATACCCTCATCATCATCATGAATACCCAAATATCATTACAATCAATCCCTCTTTCTTTTTTGGCCAACATTCCTATGATGAATGGATGGAGAAAGTTAAGTCTTTTTTTTTTTTTTTTT ATGCGCAATCCCAGTTCGTTAAAACGAGAATTCTTGAAGAAATGGATGATGGGTCTTCAAATATTCACAAGCTCCAAAGAAAACATGACGGTCACCGAGAGAAAGAAGGCCATAAAGTTATCCGCTGACATAGCCTTGGCCTCCTCCAGAAACTGCGCCACTCGGTGGAGCCGAGCCGTCATCGCCGGCGCCTCCGTCCACGACGCCACCCGCCTCGTGGCCGACGGCGTACTGGGCCGGGCCGTATGCGAGAGACTCAACCAAAGCAGCCCCAAAATCACACGAATTACGTGGAGTAGTGGGAAGATTCTCAAAAGAAGCCGCGGCGTGCGGCGGAGAGCGGCGGCGAAAAAGAAATGCATGAAGCCGGCGGCGGAGTCGATTGCAAAAAGGTTGGTGCAAAAGAGAACGAAAGTTCTTCGAGGGTTGGTTCCGGGAGGTGAATTTATGGATGAAATTGCGTTGATTGAAGAAACCCTAGATTACATATCGGCTCTTCAAGCTCAGGTTGATGTAATGCGGTGTCTTGCAACTGCGTACATACCCTCATCATCATCATGA MRNPSSLKREFLKKWMMGLQIFTSSKENMTVTERKKAIKLSADIALASSRNCATRWSRAVIAGASVHDATRLVADGVLGRAVCERLNQSSPKITRITWSSGKILKRSRGVRRRAAAKKKCMKPAAESIAKRLVQKRTKVLRGLVPGGEFMDEIALIEETLDYISALQAQVDVMRCLATAYIPSSSS Homology
BLAST of Lcy03g018660 vs. ExPASy Swiss-Prot
Match: Q9M0B9 (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28 Identity = 83/182 (45.60%), Postives = 114/182 (62.64%), Query Frame = 0
BLAST of Lcy03g018660 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 5.5e-05 Identity = 37/103 (35.92%), Postives = 47/103 (45.63%), Query Frame = 0
BLAST of Lcy03g018660 vs. ExPASy TrEMBL
Match: A0A6J1JMR3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111485792 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 9.6e-69 Identity = 145/186 (77.96%), Postives = 162/186 (87.10%), Query Frame = 0
BLAST of Lcy03g018660 vs. ExPASy TrEMBL
Match: A0A6J1E715 (transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111430013 PE=4 SV=1) HSP 1 Score: 263.8 bits (673), Expect = 5.2e-67 Identity = 144/186 (77.42%), Postives = 159/186 (85.48%), Query Frame = 0
BLAST of Lcy03g018660 vs. ExPASy TrEMBL
Match: A0A6J1F0A2 (transcription factor IBH1-like 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441170 PE=4 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 4.9e-65 Identity = 141/185 (76.22%), Postives = 159/185 (85.95%), Query Frame = 0
BLAST of Lcy03g018660 vs. ExPASy TrEMBL
Match: A0A1S3B8V1 (uncharacterized protein LOC103487305 OS=Cucumis melo OX=3656 GN=LOC103487305 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64 Identity = 142/187 (75.94%), Postives = 164/187 (87.70%), Query Frame = 0
BLAST of Lcy03g018660 vs. ExPASy TrEMBL
Match: A0A6J1HUQ3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111468009 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 7.1e-64 Identity = 140/185 (75.68%), Postives = 157/185 (84.86%), Query Frame = 0
BLAST of Lcy03g018660 vs. NCBI nr
Match: XP_022988593.1 (transcription factor IBH1-like 1 [Cucurbita maxima]) HSP 1 Score: 269.6 bits (688), Expect = 2.0e-68 Identity = 145/186 (77.96%), Postives = 162/186 (87.10%), Query Frame = 0
BLAST of Lcy03g018660 vs. NCBI nr
Match: XP_038879866.1 (transcription factor IBH1-like 1 [Benincasa hispida]) HSP 1 Score: 269.6 bits (688), Expect = 2.0e-68 Identity = 155/189 (82.01%), Postives = 166/189 (87.83%), Query Frame = 0
BLAST of Lcy03g018660 vs. NCBI nr
Match: KAG7023415.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66 Identity = 144/186 (77.42%), Postives = 159/186 (85.48%), Query Frame = 0
BLAST of Lcy03g018660 vs. NCBI nr
Match: XP_022921880.1 (transcription factor IBH1-like 1 [Cucurbita moschata]) HSP 1 Score: 263.8 bits (673), Expect = 1.1e-66 Identity = 144/186 (77.42%), Postives = 159/186 (85.48%), Query Frame = 0
BLAST of Lcy03g018660 vs. NCBI nr
Match: XP_023515816.1 (transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 261.2 bits (666), Expect = 7.0e-66 Identity = 141/186 (75.81%), Postives = 159/186 (85.48%), Query Frame = 0
BLAST of Lcy03g018660 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors ) HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29 Identity = 83/182 (45.60%), Postives = 114/182 (62.64%), Query Frame = 0
BLAST of Lcy03g018660 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors ) HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29 Identity = 83/182 (45.60%), Postives = 114/182 (62.64%), Query Frame = 0
BLAST of Lcy03g018660 vs. TAIR 10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 92.8 bits (229), Expect = 3.1e-19 Identity = 68/179 (37.99%), Postives = 100/179 (55.87%), Query Frame = 0
BLAST of Lcy03g018660 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 ) HSP 1 Score: 49.3 bits (116), Expect = 3.9e-06 Identity = 37/103 (35.92%), Postives = 47/103 (45.63%), Query Frame = 0
BLAST of Lcy03g018660 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04 Identity = 46/153 (30.07%), Postives = 69/153 (45.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|