Lcy02g006410.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy02g006410.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr02: 8412192 .. 8412494 (-)
Sequence length303
RNA-Seq ExpressionLcy02g006410.1
SyntenyLcy02g006410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCTGCATGGTTCGACTCCTCTAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCCATAGGTTCTTTGATCGAGACGGGAAACTCGAAGACATGCATAAAAGAGGAAATCAAATTGATGGAGGCTAGAGCCATTCTTGAATGGATTAAGAAACTCACTGAGAAAATTAAAGATTACCCGGATTTGATAGTCCCTCCGTTGCTGGTGGAGCCGGACGCTGCCGGGGAGTGCAAGACAACTTGGAAATCACGCTGGCGATCGATGAAATTGAAAGCTTGGCGAGTCTGGCAAATGTGA

mRNA sequence

ATGGACGCTGCATGGTTCGACTCCTCTAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCCATAGGTTCTTTGATCGAGACGGGAAACTCGAAGACATGCATAAAAGAGGAAATCAAATTGATGGAGGCTAGAGCCATTCTTGAATGGATTAAGAAACTCACTGAGAAAATTAAAGATTACCCGGATTTGATAGTCCCTCCGTTGCTGGTGGAGCCGGACGCTGCCGGGGAGTGCAAGACAACTTGGAAATCACGCTGGCGATCGATGAAATTGAAAGCTTGGCGAGTCTGGCAAATGTGA

Coding sequence (CDS)

ATGGACGCTGCATGGTTCGACTCCTCTAATTCGGGGGGAGTGGGATGGATCATTCGTGACTCCATAGGTTCTTTGATCGAGACGGGAAACTCGAAGACATGCATAAAAGAGGAAATCAAATTGATGGAGGCTAGAGCCATTCTTGAATGGATTAAGAAACTCACTGAGAAAATTAAAGATTACCCGGATTTGATAGTCCCTCCGTTGCTGGTGGAGCCGGACGCTGCCGGGGAGTGCAAGACAACTTGGAAATCACGCTGGCGATCGATGAAATTGAAAGCTTGGCGAGTCTGGCAAATGTGA

Protein sequence

MDAAWFDSSNSGGVGWIIRDSIGSLIETGNSKTCIKEEIKLMEARAILEWIKKLTEKIKDYPDLIVPPLLVEPDAAGECKTTWKSRWRSMKLKAWRVWQM
Homology
[Close]
BLAST of Lcy02g006410.1 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 2   DAAWFDSSNSGGVGWIIRDSIGSLIETGNSKTCIKEEIKLMEARAILEWIKKLTEKIKDY 61
           DA+W DS++ GG+GWIIR   G ++  GN        +KL+EA AILE ++ LT      
Sbjct: 84  DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNL---- 143

Query: 62  PDLIVPPLLVEPDAA 77
              ++ PL +E D+A
Sbjct: 144 --GVLRPLHIETDSA 152

[Close]
BLAST of Lcy02g006410.1 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 2   DAAWFDSSNSGGVGWIIRDSIGSLIETGNSKTCIKEEIKLMEARAILEWIKKLTEKIKDY 61
           DA+W DS++ GG+GWIIR   G ++  GN        +KL+EA AILE ++ LT      
Sbjct: 84  DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNL---- 143

Query: 62  PDLIVPPLLVEPDAA 77
              ++ PL +E D+A
Sbjct: 144 --GVLRPLHIETDSA 152

The following BLAST results are available for this feature:
BLAST of Lcy02g006410.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy02g006410.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNV92.0e-0440.00uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Lcy02g006410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155262.14.1e-0440.00uncharacterized protein LOC111022403 [Momordica charantia][more]
BLAST of Lcy02g006410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy02g006410Lcy02g006410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g006410.1.exon1Lcy02g006410.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy02g006410.1.cds1Lcy02g006410.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy02g006410.1Lcy02g006410.1-proteinpolypeptide